BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419536.2.1
(1366 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC O... 80 4e-012
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 80 4e-012
gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) c... 80 4e-012
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 80 4e-012
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 80 4e-012
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 80 4e-012
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 80 4e-012
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 76 6e-011
gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) c... 76 6e-011
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 68 1e-008
gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 64 2e-007
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|C71958.1|C71958 C71958 Rice panicle at flowering stage O... 58 1e-005
gb|C73022.1|C73022 C73022 Rice panicle at flowering stage O... 58 1e-005
dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AACV01008921.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 48 0.013
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 48 0.013
ref|XM_474786.1| Oryza sativa (japonica cultivar-group), p... 48 0.013
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 48 0.013
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.013
emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromoso... 48 0.013
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.013
gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering s... 46 0.050
gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature lea... 44 0.20
gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 133207
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Plus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 58613 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 58672
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 58673 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 58732
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 58733 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 58792
Query: 822 acgc 825
||||
Sbjct: 58793 acgc 58796
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 22841 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 22900
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 22901 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 22960
Query: 749 gt 750
||
Sbjct: 22961 gt 22962
Score = 61.9 bits (31), Expect = 8e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || || |||||||| ||||||||||||||||||| || ||||||
Sbjct: 22683 tccagctcgagctgcctgagccgtgcatgttcaagcacacgcacggccagagcttctggg 22742
Query: 531 agttgaccaaagatgacgc 549
|| ||||||| || |||||
Sbjct: 22743 agatgaccaacgaggacgc 22761
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 58114 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 58173
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 58174 ggcggcgccgccaccctgccccagatact 58202
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 23636 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 23695
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 23696 aaggtgataat 23706
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 22338 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 22397
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 22398 accacggcggcgccgcca 22415
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 1075849 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 1075790
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 1075789 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 1075730
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 1075729 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 1075670
Query: 822 acgc 825
||||
Sbjct: 1075669 acgc 1075666
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 1335566 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 1335625
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 1335626 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 1335685
Query: 749 gt 750
||
Sbjct: 1335686 gt 1335687
Score = 67.9 bits (34), Expect = 1e-008
Identities = 123/150 (82%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 1335062 aagtccatggctctcaaggccgccatggacctcggcatcgccgacgccatccaccaccac 1335121
Query: 188 ggcggtgccgccagcctatcccagatactaagcaaggtccatctccacccgtccagagtt 247
||||| ||||||| || ||||||||| | | || |||| ||||||||||||| || |
Sbjct: 1335122 ggcggcgccgccactctgtcccagatagtcaccagggtcgcgctccacccgtcca-aggt 1335180
Query: 248 tcca-gcctccgtcgcctgatgcgcgtgct 276
|||| |||| |||||||| |||||||||||
Sbjct: 1335181 tccatgcctgcgtcgcctcatgcgcgtgct 1335210
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 1111621 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 1111562
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 1111561 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 1111502
Query: 749 gt 750
||
Sbjct: 1111501 gt 1111500
Score = 61.9 bits (31), Expect = 8e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || || |||||||| ||||||||||||||||||| || ||||||
Sbjct: 1111779 tccagctcgagctgcctgagccgtgcatgttcaagcacacgcacggccagagcttctggg 1111720
Query: 531 agttgaccaaagatgacgc 549
|| ||||||| || |||||
Sbjct: 1111719 agatgaccaacgaggacgc 1111701
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 1076348 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 1076289
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 1076288 ggcggcgccgccaccctgccccagatact 1076260
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 1335408 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 1335456
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 1110826 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 1110767
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 1110766 aaggtgataat 1110756
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 1366609 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 1366668
Query: 531 ag 532
||
Sbjct: 1366669 ag 1366670
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 1112124 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 1112065
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 1112064 accacggcggcgccgcca 1112047
>gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024695, whole
genome shotgun sequence
Length = 15878
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 6172 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 6113
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 6112 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 6053
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 6052 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 5993
Query: 822 acgc 825
||||
Sbjct: 5992 acgc 5989
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 6671 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 6612
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 6611 ggcggcgccgccaccctgccccagatact 6583
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 239763 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 239704
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 239703 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 239644
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 239643 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 239584
Query: 822 acgc 825
||||
Sbjct: 239583 acgc 239580
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 91032 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 91091
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 91092 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 91151
Query: 749 gt 750
||
Sbjct: 91152 gt 91153
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 276095 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 276036
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 276035 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 275976
Query: 749 gt 750
||
Sbjct: 275975 gt 275974
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 240262 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 240203
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 240202 ggcggcgccgccaccctgccccagatact 240174
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 491 ccgtgcatcttcaagcacacgcacggccgaggcatctgggagttgaccaaagatgacgc 549
|||||||| ||||||||||||||||||| || |||||||| ||||||| || |||||
Sbjct: 276233 ccgtgcatgttcaagcacacgcacggccagagcttctgggagatgaccaacgaggacgc 276175
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 90874 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 90922
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 275300 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 275241
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 275240 aaggtgataat 275230
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 509661 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 509720
Query: 531 ag 532
||
Sbjct: 509721 ag 509722
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 276602 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 276543
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 276542 accacggcggcgccgcca 276525
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 12272822 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 12272763
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 12272762 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 12272703
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 12272702 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 12272643
Query: 822 acgc 825
||||
Sbjct: 12272642 acgc 12272639
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 12124091 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 12124150
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 12124151 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 12124210
Query: 749 gt 750
||
Sbjct: 12124211 gt 12124212
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 12309154 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 12309095
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 12309094 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 12309035
Query: 749 gt 750
||
Sbjct: 12309034 gt 12309033
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 12273321 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 12273262
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 12273261 ggcggcgccgccaccctgccccagatact 12273233
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 491 ccgtgcatcttcaagcacacgcacggccgaggcatctgggagttgaccaaagatgacgc 549
|||||||| ||||||||||||||||||| || |||||||| ||||||| || |||||
Sbjct: 12309292 ccgtgcatgttcaagcacacgcacggccagagcttctgggagatgaccaacgaggacgc 12309234
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 12123933 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 12123981
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 12308359 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 12308300
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 12308299 aaggtgataat 12308289
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 12542720 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 12542779
Query: 531 ag 532
||
Sbjct: 12542780 ag 12542781
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 12309661 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 12309602
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 12309601 accacggcggcgccgcca 12309584
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 14760187 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 14760128
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 14760127 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 14760068
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 14760067 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 14760008
Query: 822 acgc 825
||||
Sbjct: 14760007 acgc 14760004
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 15019904 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 15019963
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 15019964 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 15020023
Query: 749 gt 750
||
Sbjct: 15020024 gt 15020025
Score = 67.9 bits (34), Expect = 1e-008
Identities = 123/150 (82%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 15019400 aagtccatggctctcaaggccgccatggacctcggcatcgccgacgccatccaccaccac 15019459
Query: 188 ggcggtgccgccagcctatcccagatactaagcaaggtccatctccacccgtccagagtt 247
||||| ||||||| || ||||||||| | | || |||| ||||||||||||| || |
Sbjct: 15019460 ggcggcgccgccactctgtcccagatagtcaccagggtcgcgctccacccgtcca-aggt 15019518
Query: 248 tcca-gcctccgtcgcctgatgcgcgtgct 276
|||| |||| |||||||| |||||||||||
Sbjct: 15019519 tccatgcctgcgtcgcctcatgcgcgtgct 15019548
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 14795959 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 14795900
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 14795899 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 14795840
Query: 749 gt 750
||
Sbjct: 14795839 gt 14795838
Score = 61.9 bits (31), Expect = 8e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || || |||||||| ||||||||||||||||||| || ||||||
Sbjct: 14796117 tccagctcgagctgcctgagccgtgcatgttcaagcacacgcacggccagagcttctggg 14796058
Query: 531 agttgaccaaagatgacgc 549
|| ||||||| || |||||
Sbjct: 14796057 agatgaccaacgaggacgc 14796039
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 14760686 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 14760627
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 14760626 ggcggcgccgccaccctgccccagatact 14760598
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 15019746 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 15019794
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 14795164 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 14795105
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 14795104 aaggtgataat 14795094
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 15050947 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 15051006
Query: 531 ag 532
||
Sbjct: 15051007 ag 15051008
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 14796462 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 14796403
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 14796402 accacggcggcgccgcca 14796385
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 79.8 bits (40), Expect = 4e-012
Identities = 148/184 (80%)
Strand = Plus / Minus
Query: 642 ggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcccaagccatctcaa 701
|||| |||||||| || ||||||| |||||| ||| |||||||| || |||||| | |
Sbjct: 14714470 ggatcagctcgctggtggacgtcgccgggggccacggcacggcggcgcaggccatcgcca 14714411
Query: 702 aggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtcgttgcgaaggctc 761
|||||||||| | || ||||| |||||| ||||||| ||||||||||| || |||||||
Sbjct: 14714410 gggcgttcccggaggtgaagtgcagcgtgatggacctcgcccacgtcgtcgccaaggctc 14714351
Query: 762 caactcacacggacgtgcaatttatcgctggcgacatgtttgagagcattccaccagcag 821
| | ||| | |||| | | ||||| ||||||||||| |||||||||||||| |||
Sbjct: 14714350 ccggtggcaccggcgtggagtacatcgccggcgacatgttcgagagcattccaccggcaa 14714291
Query: 822 acgc 825
||||
Sbjct: 14714290 acgc 14714287
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 14974187 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 14974246
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 14974247 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 14974306
Query: 749 gt 750
||
Sbjct: 14974307 gt 14974308
Score = 67.9 bits (34), Expect = 1e-008
Identities = 123/150 (82%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 14973683 aagtccatggctctcaaggccgccatggacctcggcatcgccgacgccatccaccaccac 14973742
Query: 188 ggcggtgccgccagcctatcccagatactaagcaaggtccatctccacccgtccagagtt 247
||||| ||||||| || ||||||||| | | || |||| ||||||||||||| || |
Sbjct: 14973743 ggcggcgccgccactctgtcccagatagtcaccagggtcgcgctccacccgtcca-aggt 14973801
Query: 248 tcca-gcctccgtcgcctgatgcgcgtgct 276
|||| |||| |||||||| |||||||||||
Sbjct: 14973802 tccatgcctgcgtcgcctcatgcgcgtgct 14973831
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 14750242 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 14750183
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 14750182 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 14750123
Query: 749 gt 750
||
Sbjct: 14750122 gt 14750121
Score = 61.9 bits (31), Expect = 8e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || || |||||||| ||||||||||||||||||| || ||||||
Sbjct: 14750400 tccagctcgagctgcctgagccgtgcatgttcaagcacacgcacggccagagcttctggg 14750341
Query: 531 agttgaccaaagatgacgc 549
|| ||||||| || |||||
Sbjct: 14750340 agatgaccaacgaggacgc 14750322
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 14714969 aagtccatggccctcaagaccgccatggacctcggcatcgccgacgccatccaccaccac 14714910
Query: 188 ggcggtgccgccagcctatcccagatact 216
||||| ||||||| ||| ||||||||||
Sbjct: 14714909 ggcggcgccgccaccctgccccagatact 14714881
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 14974029 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 14974077
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 14749447 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 14749388
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 14749387 aaggtgataat 14749377
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 15005230 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 15005289
Query: 531 ag 532
||
Sbjct: 15005290 ag 15005291
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 14750745 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 14750686
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 14750685 accacggcggcgccgcca 14750668
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 61943 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 61884
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 61883 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 61824
Query: 749 gt 750
||
Sbjct: 61823 gt 61822
Score = 67.9 bits (34), Expect = 1e-008
Identities = 123/150 (82%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 128 aagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccat 187
||||||||||| |||||| |||| || ||||| | || ||||| |||||||||| |||
Sbjct: 62447 aagtccatggctctcaaggccgccatggacctcggcatcgccgacgccatccaccaccac 62388
Query: 188 ggcggtgccgccagcctatcccagatactaagcaaggtccatctccacccgtccagagtt 247
||||| ||||||| || ||||||||| | | || |||| ||||||||||||| || |
Sbjct: 62387 ggcggcgccgccactctgtcccagatagtcaccagggtcgcgctccacccgtcca-aggt 62329
Query: 248 tcca-gcctccgtcgcctgatgcgcgtgct 276
|||| |||| |||||||| |||||||||||
Sbjct: 62328 tccatgcctgcgtcgcctcatgcgcgtgct 62299
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 62101 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 62053
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 30900 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 30841
Query: 531 ag 532
||
Sbjct: 30840 ag 30839
>gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024681, whole
genome shotgun sequence
Length = 21233
Score = 75.8 bits (38), Expect = 6e-011
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| ||||||||
Sbjct: 17496 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcacggcggcg 17437
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
|| |||||| | | |||||||||| | || || || |||||| ||||||| |||||||||
Sbjct: 17436 caggccatcgccagggcgttcccggaggtgaaatgcagcgtgatggacctcgcccacgtc 17377
Query: 749 gt 750
||
Sbjct: 17376 gt 17375
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccg 519
|||||| |||||| || | ||||||||||||||||||||| || |||||
Sbjct: 17654 tccagcgcgagctgcctggcccgtgcatcttcaagcacacccatggccg 17606
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146519
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 123927 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 123986
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 123987 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 124046
Query: 749 gt 750
||
Sbjct: 124047 gt 124048
Score = 61.9 bits (31), Expect = 8e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || || |||||||| ||||||||||||||||||| || ||||||
Sbjct: 123769 tccagctcgagctgcctgagccgtgcatgttcaagcacacgcacggccagagcttctggg 123828
Query: 531 agttgaccaaagatgacgc 549
|| ||||||| || |||||
Sbjct: 123829 agatgaccaacgaggacgc 123847
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 124722 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 124781
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 124782 aaggtgataat 124792
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 123424 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 123483
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 123484 accacggcggcgccgcca 123501
>gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024698, whole
genome shotgun sequence
Length = 20844
Score = 67.9 bits (34), Expect = 1e-008
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 629 gaggtcttccaggggataagctcgctcgtcgacgtcggtgggggcatcggtacggcggcc 688
||||| ||||||||||| |||||||| |||||||||| || || | ||| |||||||
Sbjct: 8243 gaggtgttccaggggatcagctcgctggtcgacgtcgccggcgggaacggcgcggcggcg 8184
Query: 689 caagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttgcccacgtc 748
| |||||| | ||||||||||| | || || ||||||||| ||||||| |||||||||
Sbjct: 8183 cgggccatcgcgaaggcgttccccgaggtgaaatgtagcgtgatggacctcgcccacgtc 8124
Query: 749 gt 750
||
Sbjct: 8123 gt 8122
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 491 ccgtgcatcttcaagcacacgcacggccgaggcatctgggagttgaccaaagatgacgc 549
|||||||| ||||||||||||||||||| || |||||||| ||||||| || |||||
Sbjct: 8381 ccgtgcatgttcaagcacacgcacggccagagcttctgggagatgaccaacgaggacgc 8323
Score = 46.1 bits (23), Expect = 0.050
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 866 gactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccggtgga 925
||||| ||||||||||| ||| |||||||| || || || | ||||| |||||||||
Sbjct: 7448 gactgtgtgaagatacttcggaactgcaaaaaagccatcccatctagagacgccggtgga 7389
Query: 926 aaggtgataat 936
|||||||||||
Sbjct: 7388 aaggtgataat 7378
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 8750 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 8691
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 8690 accacggcggcgccgcca 8673
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
complete sequence
Length = 143073
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 10854 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 10795
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 10794 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 10735
Query: 197 gcca 200
||||
Sbjct: 10734 gcca 10731
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 4656 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 4715
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 4716 cgcagtccacctccacggcggcgccgcca 4744
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 10250 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 10191
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 10190 ggcacgtcgtcgccaaggctcc 10169
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 5225 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 5284
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 5285 ggcacgtcgtcgccaaggctcc 5306
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
complete sequence
Length = 142068
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 105097 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 105038
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 105037 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 104978
Query: 197 gcca 200
||||
Sbjct: 104977 gcca 104974
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 98899 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 98958
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 98959 cgcagtccacctccacggcggcgccgcca 98987
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 104493 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 104434
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 104433 ggcacgtcgtcgccaaggctcc 104412
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 99468 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 99527
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 99528 ggcacgtcgtcgccaaggctcc 99549
>gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012559, whole
genome shotgun sequence
Length = 17440
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 14027 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 13968
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 13967 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 13908
Query: 197 gcca 200
||||
Sbjct: 13907 gcca 13904
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 7850 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 7909
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 7910 cgcagtccacctccacggcggcgccgcca 7938
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 13423 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 13364
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 13363 ggcacgtcgtcgccaaggctcc 13342
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 8423 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 8482
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 8483 ggcacgtcgtcgccaaggctcc 8504
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
Length = 898765
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 439346 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 439287
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 439286 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 439227
Query: 197 gcca 200
||||
Sbjct: 439226 gcca 439223
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 433148 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 433207
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 433208 cgcagtccacctccacggcggcgccgcca 433236
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 438742 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 438683
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 438682 ggcacgtcgtcgccaaggctcc 438661
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 433717 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 433776
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 433777 ggcacgtcgtcgccaaggctcc 433798
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 7802053 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 7801994
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 7801993 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 7801934
Query: 197 gcca 200
||||
Sbjct: 7801933 gcca 7801930
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 7795876 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 7795935
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 7795936 cgcagtccacctccacggcggcgccgcca 7795964
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 7801449 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 7801390
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 7801389 ggcacgtcgtcgccaaggctcc 7801368
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 7796449 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 7796508
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 7796509 ggcacgtcgtcgccaaggctcc 7796530
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 25102366 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 25102307
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 25102306 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 25102247
Query: 197 gcca 200
||||
Sbjct: 25102246 gcca 25102243
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 25096189 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 25096248
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 25096249 cgcagtccacctccacggcggcgccgcca 25096277
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 25101762 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 25101703
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 25101702 ggcacgtcgtcgccaaggctcc 25101681
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 25096762 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 25096821
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 25096822 ggcacgtcgtcgccaaggctcc 25096843
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 63.9 bits (32), Expect = 2e-007
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 77 agcttgctcgatgcgcagctcgagctctggcacaccaccttcgcgttcatgaagtccatg 136
|||||||| ||||| ||||||||||||| | ||||||||| |||| |||||||||
Sbjct: 25370493 agcttgctggatgctcagctcgagctctactcgaacaccttcgccgtcatcaagtccatg 25370434
Query: 137 gcgctcaagtccgcaatacacctccgaattgccgatgccatccacctccatggcggtgcc 196
|| |||||||| || || ||||| | || ||||| ||| |||||| ||||||||| |||
Sbjct: 25370433 gcactcaagtcggcgctagacctcggcatcgccgacgccgtccaccgccatggcggcgcc 25370374
Query: 197 gcca 200
||||
Sbjct: 25370373 gcca 25370370
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 25364295 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 25364354
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 25364355 cgcagtccacctccacggcggcgccgcca 25364383
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 25369889 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 25369830
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 25369829 ggcacgtcgtcgccaaggctcc 25369808
Score = 44.1 bits (22), Expect = 0.20
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 25364864 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 25364923
Query: 741 cccacgtcgttgcgaaggctcc 762
|||||||| || ||||||||
Sbjct: 25364924 ggcacgtcgtcgccaaggctcc 25364945
>gb|C71958.1|C71958 C71958 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0687_1A, mRNA sequence
Length = 343
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 83 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 142
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 143 cgcagtccacctccacggcggcgccgcca 171
>gb|C73022.1|C73022 C73022 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2752_1A, mRNA sequence
Length = 464
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 90 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 149
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 150 cgcagtccacctccacggcggcgccgcca 178
>dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full
insert sequence
Length = 1357
Score = 58.0 bits (29), Expect = 1e-005
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 92 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 151
Query: 172 tgccatccacctccatggcggtgccgcca 200
|| |||||||||| ||||| |||||||
Sbjct: 152 cgcagtccacctccacggcggcgccgcca 180
Score = 56.0 bits (28), Expect = 5e-005
Identities = 286/372 (76%)
Strand = Plus / Plus
Query: 681 cggcggcccaagccatctcaaaggcgttcccgcacgtcaagtgtagcgtgctggaccttg 740
||||||| || | |||||| |||||||||||| | || | ||| |||||| ||||||| |
Sbjct: 661 cggcggcgcaggtcatctcgaaggcgttcccggaggtgaggtgcagcgtgatggacctcg 720
Query: 741 cccacgtcgttgcgaaggctccaactcacacggacgtgcaatttatcgctggcgacatgt 800
|||||||| || |||||||| | ||| ||||| | | ||||| ||||||||||
Sbjct: 721 ggcacgtcgtcgccaaggctcccgccggcaccgacgtcgagtacatcgccggcgacatgt 780
Query: 801 ttgagagcattccaccagcagacgccgtactgttgaagtcggtcttgcatgattgggacc 860
||||||| | ||||| |||||||| || | | |||| ||| | ||||| |||| |
Sbjct: 781 ttgagagtgtgccaccggcagacgctgtcttcctcaagtgggttctacatgactggggcg 840
Query: 861 atgacgactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccg 920
||||||| ||| | |||||| | ||||| ||||| || ||||| ||||| ||||| |
Sbjct: 841 atgacgattgcatcaagatattaaagaactgcaagaaagctatccctcctagagacaaag 900
Query: 921 gtggaaaggtgataataataaacatggtagttggagctgggccatctgacatgaagcaca 980
| |||||||||||||| || | || || || ||||| || || |||||| ||||||||
Sbjct: 901 gaggaaaggtgataatcatggatatagtggtcggagcaggaccgtctgaccagaagcaca 960
Query: 981 aagagatgcaggccatattcgatgtctatatcatgttcatcaatggcatggaacgagatg 1040
||| | || || | |||||| | || ||||||||| |||||||||| ||| ||||||
Sbjct: 961 gggaggtacaagcgttgttcgatatgtacatcatgttcgtcaatggcattgaaagagatg 1020
Query: 1041 agcaggagtgga 1052
|||| |||||||
Sbjct: 1021 agcaagagtgga 1032
>gb|AACV01008921.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008921, whole
genome shotgun sequence
Length = 29490
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 19319 tttatcgctggcgacatgtttgag 19296
>gb|AACV01013578.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013578,
whole genome shotgun sequence
Length = 754
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 249 ggcgttcccccatgtcaagtgcagcgtgctggacct 214
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0063H02
Length = 152326
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 41438 ggcgttcccccatgtcaagtgcagcgtgctggacct 41403
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0456E06
Length = 164353
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 135045 ggcgttcccccatgtcaagtgcagcgtgctggacct 135010
>ref|XM_474786.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 936
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 715 tttatcgctggcgacatgtttgag 738
>ref|NT_107203.1| Oryza sativa (japonica cultivar-group)
Length = 2359875
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 1230898 tttatcgctggcgacatgtttgag 1230921
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047 genomic
scaffold, whole genome shotgun sequence
Length = 2656042
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 1194290 ggcgttcccccatgtcaagtgcagcgtgctggacct 1194255
>gb|CH401188.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000025 genomic
scaffold, whole genome shotgun sequence
Length = 1620156
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 1482054 tttatcgctggcgacatgtttgag 1482077
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 9801942 ggcgttcccccatgtcaagtgcagcgtgctggacct 9801907
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 5865209 tttatcgctggcgacatgtttgag 5865186
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15,
complete sequence
Length = 137874
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 84496 tttatcgctggcgacatgtttgag 84519
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 48.1 bits (24), Expect = 0.013
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 782 tttatcgctggcgacatgtttgag 805
||||||||||||||||||||||||
Sbjct: 6530248 tttatcgctggcgacatgtttgag 6530271
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 703 ggcgttcccgcacgtcaagtgtagcgtgctggacct 738
||||||||| || |||||||| ||||||||||||||
Sbjct: 9844803 ggcgttcccccatgtcaagtgcagcgtgctggacct 9844768
>gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2710, mRNA sequence
Length = 332
Score = 46.1 bits (23), Expect = 0.050
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 112 caccttcgcgttcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccga 171
||||||||| |||| ||||||||||| |||||||| || || ||||||| || |||||
Sbjct: 178 caccttcgccgtcatcaagtccatggctctcaagtcggcgctagacctccgcatcgccga 119
Query: 172 tgccatccacctcca 186
|| ||||||||||
Sbjct: 118 cgcagtccacctcca 104
>gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60846_3A, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.20
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 123 tcatgaagtccatggcgctcaagtccgcaatacacctccgaattgccgatgccatccacc 182
|||| ||||||||||| |||||| |||| | ||||| | || ||||| ||||||||||
Sbjct: 105 tcatcaagtccatggctctcaaggccgccttggacctcggcatcgccgacgccatccacc 164
Query: 183 tccatggcggtgccgcca 200
||| ||||| |||||||
Sbjct: 165 accacggcggcgccgcca 182
>gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024715, whole
genome shotgun sequence
Length = 7082
Score = 44.1 bits (22), Expect = 0.20
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 471 tccagcacgagctcccagacccgtgcatcttcaagcacacgcacggccgaggcatctggg 530
|||||| |||||| || | ||||||||||||| ||||||| || ||||| |||| ||||
Sbjct: 4573 tccagcgcgagctgccgggcccgtgcatcttcgagcacacccatggccggagcatgtggg 4632
Query: 531 ag 532
||
Sbjct: 4633 ag 4634
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,729,345
Number of Sequences: 438736
Number of extensions: 1729345
Number of successful extensions: 9767
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9224
Number of HSP's gapped (non-prelim): 533
length of query: 1366
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1345
effective length of database: 2,791,206,460
effective search space: 3754172688700
effective search space used: 3754172688700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)