BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (j... 371 e-100
gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (j... 371 e-100
gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-... 371 e-100
dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (j... 363 9e-098
gb|AU070534.1|AU070534 AU070534 Rice shoot Oryza sativa (ja... 226 1e-056
gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbar... 222 2e-055
gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) c... 222 2e-055
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 222 2e-055
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
dbj|AK071372.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
ref|NM_195684.1| Oryza sativa (japonica cultivar-group) put... 74 1e-010
dbj|AG022668.1| Oryza sativa (japonica cultivar-group) DNA,... 62 4e-007
dbj|AG205619.1| Oryza sativa (japonica cultivar-group) DNA,... 62 4e-007
gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, N... 62 4e-007
gb|AACV01021195.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chr... 62 4e-007
gb|CH401251.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|C98907.1|C98907 C98907 Rice panicle at flowering stage O... 52 4e-004
gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
ref|NM_190276.1| Oryza sativa (japonica cultivar-group), p... 52 4e-004
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP003418.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP003349.4| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AG206668.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
gb|AZ047843.1|AZ047843 nbeb0095C10f CUGI Rice BAC Library (... 42 0.42
dbj|AG024208.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.42
dbj|AG206166.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.42
gb|CA999014.1|CA999014 S234M_B11 Rice cold stress germinati... 42 0.42
gb|CA999016.1|CA999016 S234M_B12 Rice cold stress germinati... 42 0.42
gb|CF318496.1|CF318496 HD--08-K07.g1 OsHDAC1-overexpressing... 42 0.42
gb|CV721914.1|CV721914 YBH--05-M06.b1 Rice before heading y... 42 0.42
gb|CV723024.1|CV723024 root--02-E13.g1 Rice root lambda pha... 42 0.42
gb|CV723046.1|CV723046 root--02-F13.g1 Rice root lambda pha... 42 0.42
gb|CX056241.1|CX056241 AA-CTG1 Rice cold stress germination... 42 0.42
gb|CX056248.1|CX056248 AC-CAC10 Rice cold stress germinatio... 42 0.42
emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-gr... 42 0.42
dbj|AK062776.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.42
dbj|AK100820.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.42
gb|AACV01009972.1| Oryza sativa (japonica cultivar-group) c... 42 0.42
gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) c... 42 0.42
ref|XM_472852.1| Oryza sativa (japonica cultivar-group), p... 42 0.42
ref|XM_472853.1| Oryza sativa (japonica cultivar-group), p... 42 0.42
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.42
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.42
emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromoso... 42 0.42
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.42
>gb|CB642724.1|CB642724 OSJNEb03A24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03A24 3', mRNA sequence
Length = 664
Score = 371 bits (187), Expect = e-100
Identities = 295/331 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 564 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 505
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 504 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 445
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 444 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 385
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtac 250
||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct: 384 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccggatac 325
Query: 251 acctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaag 310
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 tcctcgagattcgggctctacttcgtggactacaaggataacctcaagagataccccaag 265
Query: 311 aactcggtccagtggttcaagaccctgctga 341
|||||||| |||||||||||| |||| ||||
Sbjct: 264 aactcggtgcagtggttcaaggccctcctga 234
>gb|CB673496.1|CB673496 OSJNEe08A17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08A17 3', mRNA sequence
Length = 790
Score = 371 bits (187), Expect = e-100
Identities = 295/331 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 713 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 654
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 653 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 594
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 593 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 534
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtac 250
||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct: 533 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccggatac 474
Query: 251 acctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaag 310
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 473 tcctcgagattcgggctctacttcgtggactacaaggataacctcaagagataccccaag 414
Query: 311 aactcggtccagtggttcaagaccctgctga 341
|||||||| |||||||||||| |||| ||||
Sbjct: 413 aactcggtgcagtggttcaaggccctcctga 383
>gb|AY129294.1| Oryza sativa (japonica cultivar-group) beta-glucosidase mRNA,
complete cds
Length = 2032
Score = 371 bits (187), Expect = e-100
Identities = 295/331 (89%)
Strand = Plus / Plus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 1369 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 1428
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 1429 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 1488
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 1489 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 1548
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtac 250
||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct: 1549 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccggatac 1608
Query: 251 acctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaag 310
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1609 tcctcgagattcgggctctacttcgtggactacaaggataacctcaagagataccccaag 1668
Query: 311 aactcggtccagtggttcaagaccctgctga 341
|||||||| |||||||||||| |||| ||||
Sbjct: 1669 aactcggtgcagtggttcaaggccctcctga 1699
>dbj|AK119546.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A05, full
insert sequence
Length = 1828
Score = 371 bits (187), Expect = e-100
Identities = 295/331 (89%)
Strand = Plus / Plus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 1287 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 1346
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 1347 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 1406
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 1407 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 1466
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtac 250
||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct: 1467 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccggatac 1526
Query: 251 acctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaag 310
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1527 tcctcgagattcgggctctacttcgtggactacaaggataacctcaagagataccccaag 1586
Query: 311 aactcggtccagtggttcaagaccctgctga 341
|||||||| |||||||||||| |||| ||||
Sbjct: 1587 aactcggtgcagtggttcaaggccctcctga 1617
>gb|CB642882.1|CB642882 OSJNEb03E17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E17 3', mRNA sequence
Length = 763
Score = 363 bits (183), Expect = 9e-098
Identities = 294/331 (88%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 616 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 557
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 556 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 497
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 496 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 437
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtac 250
||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct: 436 gacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtgggcggccggatac 377
Query: 251 acctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaag 310
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 376 tcctcgagattcgggctctacttcgtggactacaaggataccctcaagagataccccaag 317
Query: 311 aactcggtccagtggttcaagaccctgctga 341
|||||||| |||||||||||| |||| ||||
Sbjct: 316 aactcggtgcagtggttcaaggccctcctga 286
>gb|AU070534.1|AU070534 AU070534 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2162_7A, mRNA sequence
Length = 389
Score = 226 bits (114), Expect = 1e-056
Identities = 195/222 (87%)
Strand = Plus / Plus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggg 70
|||||||||||||||||||| ||||||| |||||| | || |||||||||||||| |||
Sbjct: 168 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaacggg 227
Query: 71 atggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagg 130
||||| ||| |||||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 228 atggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaagagg 287
Query: 131 atcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgt 190
||||| |||||||| | |||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct: 288 atcaaataccacaatgactacctcaccaatctggctgcttccatcaaggaggacgggtgc 347
Query: 191 gacgtgcgtgggtacttcgcgtggtcgttgctggacaactgg 232
||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 348 gacgtacgtgggtacttcgcgtggtctctgctggacaactgg 389
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0021B21, from chromosome 3, complete sequence
Length = 139208
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 73895 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 73836
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 73835 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 73776
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 73775 gagataccccaagaactcggtgcagtggttcaaggccctcctga 73732
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 74139 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 74080
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 74079 aggatcaaataccacaatgactacctca 74052
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 74304 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 74249
>gb|AACV01006096.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006096, whole
genome shotgun sequence
Length = 15111
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 9935 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 9876
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9875 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 9816
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 9815 gagataccccaagaactcggtgcagtggttcaaggccctcctga 9772
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 10179 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 10120
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 10119 aggatcaaataccacaatgactacctca 10092
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 10344 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 10289
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 1008611 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 1008552
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008551 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 1008492
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 1008491 gagataccccaagaactcggtgcagtggttcaaggccctcctga 1008448
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 1008855 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 1008796
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 1008795 aggatcaaataccacaatgactacctca 1008768
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 1009020 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 1008965
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 5879161 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 5879102
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5879101 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 5879042
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 5879041 gagataccccaagaactcggtgcagtggttcaaggccctcctga 5878998
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 5879405 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 5879346
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 5879345 aggatcaaataccacaatgactacctca 5879318
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 5879570 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 5879515
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 6071523 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 6071464
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071463 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 6071404
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 6071403 gagataccccaagaactcggtgcagtggttcaaggccctcctga 6071360
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 6071767 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 6071708
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 6071707 aggatcaaataccacaatgactacctca 6071680
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 6071932 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 6071877
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 5844278 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 5844219
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844218 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 5844159
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 5844158 gagataccccaagaactcggtgcagtggttcaaggccctcctga 5844115
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 5844522 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 5844463
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 5844462 aggatcaaataccacaatgactacctca 5844435
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 5844687 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 5844632
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 222 bits (112), Expect = 2e-055
Identities = 151/164 (92%)
Strand = Plus / Minus
Query: 178 ggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatg 237
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct: 5845065 ggaggacgggtgcgacgtacgtgggtacttcgcgtggtctctgctggacaactgggagtg 5845006
Query: 238 ggccgccgggtacacctccagattcgggctctacttcgtggactacaaggataacctcaa 297
||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845005 ggcggccggatactcctcgagattcgggctctacttcgtggactacaaggataacctcaa 5844946
Query: 298 gaggtaccccaagaactcggtccagtggttcaagaccctgctga 341
||| ||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 5844945 gagataccccaagaactcggtgcagtggttcaaggccctcctga 5844902
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 68 gggatggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaag 127
|||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct: 5845309 gggatggatgacagcaacaacccgttcatttccatcaaggacgccctcaaggacagcaag 5845250
Query: 128 aggatcaagtaccacaacggctacctca 155
|||||||| |||||||| | ||||||||
Sbjct: 5845249 aggatcaaataccacaatgactacctca 5845222
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 11 ctgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaa 66
|||||||||||||||||||| ||||||| |||||| | || ||||||||||||||
Sbjct: 5845474 ctgatgaactatgtcaaggaaaggtacaacagcccaccagtgtacatcactgaaaa 5845419
>dbj|AK071372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094F17, full
insert sequence
Length = 1842
Score = 93.7 bits (47), Expect = 1e-016
Identities = 253/321 (78%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 12 tgatgaactatgtcaaggagcggtacaatagcccaacggtttacatcactgaaaatggga 71
||||||||||||||||||| | ||||| | ||||| || ||||| || || ||||| |
Sbjct: 1235 tgatgaactatgtcaaggacagatacaacaaaccaactgtctacataacagagaatggaa 1294
Query: 72 tggacgacggcaacagccctttcacctccatccaggacgccctcaaggacagcaagagga 131
|||| || ||||||||||| |||| ||| | || | |||||||||||| ||||||||
Sbjct: 1295 tggatgatggcaacagccccttcatctctctgaagaatgccctcaaggacgacaagagga 1354
Query: 132 tcaagtaccacaacggctacctcaacaacgttgctgcctccataaaggaggacgggtgtg 191
||| |||||||| | ||| || | ||| | || | |||||||| |||||| || ||||
Sbjct: 1355 ccaaataccacaatgactatcttacaaacttagcagactccataagggaggatggttgtg 1414
Query: 192 acgtgcgtgggtacttcgcgtggtcgttgctggacaactgggaatgggccgccgggtaca 251
| || || ||||| || || ||||| | || ||||||||||| |||||||| || ||||
Sbjct: 1415 atgttcgcgggtattttgcatggtctcttcttgacaactgggagtgggccgctggataca 1474
Query: 252 cctccagattcgggctctacttcgtggactacaaggataacctcaagaggtaccccaaga 311
|||| |||||||| | |||| ||| ||||||||| |||| ||||| ||||| ||||
Sbjct: 1475 cctcgagattcggattatactacgtagactacaag---aaccggaagagatacccaaaga 1531
Query: 312 actcggtccagtggttcaaga 332
| || || |||||||||||||
Sbjct: 1532 attcagtgcagtggttcaaga 1552
>ref|NM_195684.1| Oryza sativa (japonica cultivar-group) putative beta-glucosidase
(OSJNBa0065C16.15), mRNA
Length = 1548
Score = 73.8 bits (37), Expect = 1e-010
Identities = 177/223 (79%), Gaps = 3/223 (1%)
Strand = Plus / Plus
Query: 110 gccctcaaggacagcaagaggatcaagtaccacaacggctacctcaacaacgttgctgcc 169
|||||||||||| |||||||| ||| |||||||| | ||| || | ||| | || | |
Sbjct: 1306 gccctcaaggacgacaagaggaccaaataccacaatgactatcttacaaacttagcagac 1365
Query: 170 tccataaaggaggacgggtgtgacgtgcgtgggtacttcgcgtggtcgttgctggacaac 229
||||||| |||||| || ||||| || || ||||| || || ||||| | || ||||||
Sbjct: 1366 tccataagggaggatggttgtgatgttcgcgggtattttgcatggtctcttcttgacaac 1425
Query: 230 tgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactacaaggat 289
||||| |||||||| || |||||||| |||||||| | |||| ||| |||||||||
Sbjct: 1426 tgggagtgggccgctggatacacctcgagattcggattatactacgtagactacaag--- 1482
Query: 290 aacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
|||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 1483 aaccggaagagatacccaaagaattcagtgcagtggttcaaga 1525
>dbj|AG022668.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC2540_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC2540, genomic survey sequence
Length = 628
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 307 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 366
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 367 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 412
>dbj|AG205619.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05177T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2540, genomic survey sequence
Length = 593
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 307 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 366
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 367 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 412
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0065C16, from Chromosome 10, complete sequence
Length = 146391
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 71361 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 71302
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 71301 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 71256
>gb|AACV01021195.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021195, whole
genome shotgun sequence
Length = 17610
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 16414 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 16473
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 16474 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 16519
>ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 1671487
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 755308 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 755367
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 755368 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 755413
>gb|CH401251.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000088
genomic scaffold, whole genome shotgun sequence
Length = 1117668
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 549575 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 549634
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 549635 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 549680
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 7802471 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 7802530
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 7802531 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 7802576
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 8449429 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 8449488
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 8449489 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 8449534
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 61.9 bits (31), Expect = 4e-007
Identities = 90/109 (82%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || |||||||| |||||||| | |||| ||| ||||||
Sbjct: 8454528 gacaactgggagtgggccgctggatacacctcgagattcggattatactacgtagactac 8454587
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||||||||
Sbjct: 8454588 aag---aaccggaagagatacccaaagaattcagtgcagtggttcaaga 8454633
>gb|C98907.1|C98907 C98907 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3241_1A, mRNA sequence
Length = 395
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 157 cgtgggtacttcgcatggtcgttcctggacaact 190
>gb|AACV01002847.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002847, whole
genome shotgun sequence
Length = 99512
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 73971 cgtgggtacttcgcatggtcgttcctggacaact 73938
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 39083524 cgtgggtacttcgcatggtcgttcctggacaact 39083557
>ref|NM_190276.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1566
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 1384 cgtgggtacttcgcatggtcgttcctggacaact 1417
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 13530907 cgtgggtacttcgcatggtcgttcctggacaact 13530940
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0506A10
Length = 145265
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 20834 cgtgggtacttcgcatggtcgttcctggacaact 20867
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0674H09
Length = 142955
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 76487 cgtgggtacttcgcatggtcgttcctggacaact 76520
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 13249423 cgtgggtacttcgcatggtcgttcctggacaact 13249456
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 38451144 cgtgggtacttcgcatggtcgttcctggacaact 38451177
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 197 cgtgggtacttcgcgtggtcgttgctggacaact 230
|||||||||||||| |||||||| ||||||||||
Sbjct: 39002854 cgtgggtacttcgcatggtcgttcctggacaact 39002887
>dbj|AG206668.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10058T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5055, genomic survey sequence
Length = 556
Score = 50.1 bits (25), Expect = 0.002
Identities = 88/109 (80%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 224 gacaactgggaatgggccgccgggtacacctccagattcgggctctacttcgtggactac 283
||||||||||| |||||||| || ||||||| |||||||| | |||| ||| ||||||
Sbjct: 403 gacaactgggagtgggccgctggatacacctngagattcggattatactacgtagactac 462
Query: 284 aaggataacctcaagaggtaccccaagaactcggtccagtggttcaaga 332
||| |||| ||||| ||||| ||||| || || |||||||| ||||
Sbjct: 463 aag---aaccggaagagatacccaaagaattcagtgcagtggttnaaga 508
>gb|AZ047843.1|AZ047843 nbeb0095C10f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0095C10f, DNA
sequence
Length = 836
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 338 aagagataccccaagaactctgcccattggttcaaga 374
>dbj|AG024208.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4001_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4001, genomic survey sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||||| || ||||||||||
Sbjct: 92 aagagataccccaagaactcggcccgttggttcaaga 56
>dbj|AG206166.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4054_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4054, genomic survey sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||||| || ||||||||||
Sbjct: 92 aagagataccccaagaactcggcccgttggttcaaga 56
>gb|CA999014.1|CA999014 S234M_B11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||||| || ||||||||||
Sbjct: 204 aagagataccccaagaactcggcccgttggttcaaga 240
>gb|CA999016.1|CA999016 S234M_B12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||||| || ||||||||||
Sbjct: 204 aagagataccccaagaactcggcccgttggttcaaga 240
>gb|CF318496.1|CF318496 HD--08-K07.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-K07, mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 194 aagagataccccaagaactctgcccattggttcaaga 158
>gb|CV721914.1|CV721914 YBH--05-M06.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--05-M06, mRNA sequence
Length = 382
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 196 aagagataccccaagaactctgcccattggttcaaga 232
>gb|CV723024.1|CV723024 root--02-E13.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E13, mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 81 aagagataccccaagaactctgcccattggttcaaga 45
>gb|CV723046.1|CV723046 root--02-F13.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-F13, mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 81 aagagataccccaagaactctgcccattggttcaaga 45
>gb|CX056241.1|CX056241 AA-CTG1 Rice cold stress germination cDNA-AFLP Oryza sativa
(japonica cultivar-group) cDNA clone AA-CTG1 5' similar
to Beta-glucosidase [Arabidopsis thaliana], mRNA
sequence
Length = 294
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 192 aagagataccccaagaactctgcccattggttcaaga 156
>gb|CX056248.1|CX056248 AC-CAC10 Rice cold stress germination cDNA-AFLP Oryza sativa
(japonica cultivar-group) cDNA clone AC-CAC10 5' similar
to Putative beta-glucosidase [O. sativa], mRNA sequence
Length = 308
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 164 aagagataccccaagaactctgcccattggttcaaga 128
>emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0053D18,
*** SEQUENCING IN PROGRESS ***
Length = 156939
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||||| || ||||||||||
Sbjct: 124551 aagagataccccaagaactcggcccgttggttcaaga 124587
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 112292 aagagataccccaagaactctgcccattggttcaaga 112328
>dbj|AK062776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A09, full
insert sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 617 aagagataccccaagaactctgcccattggttcaaga 653
>dbj|AK100820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122G03, full
insert sequence
Length = 1348
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 1173 aagagataccccaagaactctgcccattggttcaaga 1209
>gb|AACV01009972.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009972, whole
genome shotgun sequence
Length = 12357
Score = 42.1 bits (21), Expect = 0.42
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 296 aagaggtaccccaagaactcggtccagtggttcaaga 332
||||| |||||||||||||| | ||| ||||||||||
Sbjct: 4051 aagagataccccaagaactctgcccattggttcaaga 4015
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 817,101
Number of Sequences: 438736
Number of extensions: 817101
Number of successful extensions: 7627
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7188
Number of HSP's gapped (non-prelim): 427
length of query: 733
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 712
effective length of database: 2,791,206,460
effective search space: 1987338999520
effective search space used: 1987338999520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)