BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRP... 383 e-103
dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA... 367 1e-098
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 163 4e-037
gb|AC134241.2| Oryza sativa (japonica cultivar-group) chrom... 163 4e-037
gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) c... 163 4e-037
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 163 4e-037
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 163 4e-037
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 163 4e-037
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 163 4e-037
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 163 4e-037
gb|CZ168707.1|CZ168707 UCDRDs967_5.1 UCD RDs Rice Insertion... 123 3e-025
gb|CZ167670.1|CZ167670 UCDRDs852_5.1 UCD RDs Rice Insertion... 101 1e-018
gb|AQ396394.2|AQ396394 nbxb0067P07r CUGI Rice BAC Library O... 58 2e-005
>dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication
protein A 70b, complete cds
Length = 1928
Score = 383 bits (193), Expect = e-103
Identities = 448/533 (84%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 1901 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 1842
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 1841 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 1782
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1781 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 1722
Query: 640 agctgtcgtccccctcctctttcctgatccgatcaagctcgtcggcgctgcagccaatga 699
| ||||| || |||||||| ||||| ||||||||||||||||| || |||||||||| |
Sbjct: 1721 aactgtcatcaccctcctccttcctaatccgatcaagctcgtctgcactgcagccaacaa 1662
Query: 700 tcttctccgcatgctcgttgaacacggacacccaagcctcaccagtgggatcggagagct 759
|| |||| || || || ||||||| || | ||| ||||||||||| || ||||||| ||
Sbjct: 1661 tcctctctgcctgatcattgaacagagaaagccaggcctcaccagtagggtcggagacct 1602
Query: 760 tgatcaccatgatgtatctcagcgagcactcagagtcattcttttggcacccctcgcacc 819
|||| ||||||||||| ||||| |||||||||| |||||||| |||||||| || ||||
Sbjct: 1601 tgatgaccatgatgtacctcagtgagcactcagcatcattcttctggcacccttcacacc 1542
Query: 820 agtatccagacccaaaagcttcagtcaccttcttgttacaggtcgtgcaagcacggtacc 879
||||||| || |||| || ||||||||||||||||| |||||| ||||||| |||||||
Sbjct: 1541 agtatcctgatccaattgcctcagtcaccttcttgttgcaggtcttgcaagctcggtacc 1482
Query: 880 acatattctgatcaggcttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
|||| | || ||||||||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 1481 acatggtttggtcaggcttgataaggctaatataggcattcagactgaagaacacaggct 1422
Query: 940 tttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatca 992
| ||||| |||| || ||||| |||||||||||||||||||||||||||
Sbjct: 1421 tatcctgacccaagttggggtcacttgtgatgtgagacagaaaaactctatca 1369
Score = 325 bits (164), Expect = 4e-086
Identities = 440/532 (82%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcataccaggacttaagattcttagcc 1103
|||| ||||| ||||||| | |||||||||||||||||||| | | || | | |||
Sbjct: 1317 attgatgccattgaagtacccttgccttcagagtcataccaagctctgagctgttctgcc 1258
Query: 1104 tcaggcaagtcaggattaatctcgagagtacttctgccaatagttgaaagagacacgcct 1163
||||||||||||||||| | | | |||||||| || | |||||| ||||||| |||
Sbjct: 1257 tcaggcaagtcaggattcagtacaattgtacttctccccacagttgacagagacaaacct 1198
Query: 1164 tggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatgtcc 1223
|||||||||||||||||||||||||||||||||| | ||| | | ||| |||||||||
Sbjct: 1197 tggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatgtcc 1138
Query: 1224 aaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagttttg 1283
|| ||||| || ||||| || || |||||||||||||| ||||| || || |||||||||
Sbjct: 1137 aagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagttttg 1078
Query: 1284 ccagagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctc 1343
| |||||||| |||||||| ||||||||||| || || ||||||||||||||||| |||
Sbjct: 1077 ctcgagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctc 1018
Query: 1344 ctaacactgagtgtgggagatacgctctgaaccacaccaacaatatctacaagctccctg 1403
|||||||| || || ||||||||||||||||| || |||| || |||||| |||||||||
Sbjct: 1017 ctaacactaagagtaggagatacgctctgaacaaccccaataacatctactagctccctg 958
Query: 1404 ccaccgacgtatggtcctagctgatcaatcttgacaaggttgtattgcactggtggaagg 1463
||||| || ||||| |||||||||||||||||||||| |||||| || | |||| |
Sbjct: 957 ccaccaacatatggccctagctgatcaatcttgacaaagttgtactgaatctgtgggata 898
Query: 1464 aaagtctccccctctgcttcttcaacaatagcattctcgtttagtgacaactcatagtca 1523
||||| || ||||| ||||| ||||||| ||||||||| || || | || ||| ||||||
Sbjct: 897 aaagtttcgccctcagcttcctcaacaacagcattctcattcagggtcatctcgtagtca 838
Query: 1524 tttttgactgtcttgaactgcttgttggcaattctaagagatccttttgaga 1575
|| | ||| |||||||||||||||| ||| | ||| ||||||||||| ||||
Sbjct: 837 ttatggacagtcttgaactgcttgtcggcgactctgagagatcctttggaga 786
>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full
insert sequence
Length = 2221
Score = 367 bits (185), Expect = 1e-098
Identities = 446/533 (83%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 1983 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 1924
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 1923 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 1864
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1863 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 1804
Query: 640 agctgtcgtccccctcctctttcctgatccgatcaagctcgtcggcgctgcagccaatga 699
| ||||| || |||||||| ||||| |||||||||||||| || || |||||||||| |
Sbjct: 1803 aactgtcatcaccctcctccttcctaatccgatcaagctcatctgcactgcagccaacaa 1744
Query: 700 tcttctccgcatgctcgttgaacacggacacccaagcctcaccagtgggatcggagagct 759
|| |||| || || || ||||||| || | ||| ||||||||||| || ||||||| ||
Sbjct: 1743 tcctctctgcctgatcattgaacagagaaagccaggcctcaccagtagggtcggagacct 1684
Query: 760 tgatcaccatgatgtatctcagcgagcactcagagtcattcttttggcacccctcgcacc 819
|||| ||||||||||| ||||| |||||||||| |||||||| |||||||| || ||||
Sbjct: 1683 tgatgaccatgatgtacctcagtgagcactcagcatcattcttctggcacccttcacacc 1624
Query: 820 agtatccagacccaaaagcttcagtcaccttcttgttacaggtcgtgcaagcacggtacc 879
||||||| || |||| || ||||||||||||||||| |||||| ||||||| |||||||
Sbjct: 1623 agtatcctgatccaattgcctcagtcaccttcttgttgcaggtcttgcaagctcggtacc 1564
Query: 880 acatattctgatcaggcttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
|||| | || ||||||||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 1563 acatggtttggtcaggcttgataaggctaatataggcattcagactgaagaacacaggct 1504
Query: 940 tttcctggcccatagcaggatcactggtgatgtgagacagaaaaactctatca 992
| ||||| |||| || ||||| |||||||||||||||||||||| ||||
Sbjct: 1503 tatcctgacccaagttggggtcacttgtgatgtgagacagaaaaactccatca 1451
Score = 325 bits (164), Expect = 4e-086
Identities = 440/532 (82%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcataccaggacttaagattcttagcc 1103
|||| ||||| ||||||| | |||||||||||||||||||| | | || | | |||
Sbjct: 1399 attgatgccattgaagtacccttgccttcagagtcataccaagctctgagctgttctgcc 1340
Query: 1104 tcaggcaagtcaggattaatctcgagagtacttctgccaatagttgaaagagacacgcct 1163
||||||||||||||||| | | | |||||||| || | |||||| ||||||| |||
Sbjct: 1339 tcaggcaagtcaggattcactacaattgtacttctccccacagttgacagagacaaacct 1280
Query: 1164 tggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatgtcc 1223
|||||||||||||||||||||||||||||||||| | ||| | | ||| |||||||||
Sbjct: 1279 tggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatgtcc 1220
Query: 1224 aaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagttttg 1283
|| ||||| || ||||| || || |||||||||||||| ||||| || || |||||||||
Sbjct: 1219 aagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagttttg 1160
Query: 1284 ccagagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctc 1343
| |||||||| |||||||| ||||||||||| || || ||||||||||||||||| |||
Sbjct: 1159 ctcgagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctc 1100
Query: 1344 ctaacactgagtgtgggagatacgctctgaaccacaccaacaatatctacaagctccctg 1403
|||||||| || || ||||||||||||||||| || |||| || |||||| |||||||||
Sbjct: 1099 ctaacactaagagtaggagatacgctctgaacaaccccaataacatctactagctccctg 1040
Query: 1404 ccaccgacgtatggtcctagctgatcaatcttgacaaggttgtattgcactggtggaagg 1463
||||| || ||||| |||||||||||||||||||||| |||||| || | |||| |
Sbjct: 1039 ccaccaacatatggccctagctgatcaatcttgacaaagttgtactgaatctgtgggata 980
Query: 1464 aaagtctccccctctgcttcttcaacaatagcattctcgtttagtgacaactcatagtca 1523
||||| || ||||| ||||| ||||||| ||||||||| || || | || ||| ||||||
Sbjct: 979 aaagtttcgccctcagcttcctcaacaacagcattctcattcagggtcatctcgtagtca 920
Query: 1524 tttttgactgtcttgaactgcttgttggcaattctaagagatccttttgaga 1575
|| | ||| |||||||||||||||||||| | ||| || |||||||| ||||
Sbjct: 919 ttatggacagtcttgaactgcttgttggcgactctgagggatcctttggaga 868
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
complete sequence
Length = 111961
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 9598 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 9539
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 9538 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 9479
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 9478 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 9419
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 9418 aactgtcatcaccctcct 9401
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 7917 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 7858
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 7857 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 7798
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 7797 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 7738
Query: 1570 ttgaga 1575
| ||||
Sbjct: 7737 tggaga 7732
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 8982 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 8923
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 8922 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 8863
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 8862 ttgataaggctaatataggcattcagactgaagaacacaggct 8820
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 8108 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 8049
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 8048 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 7999
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 8329 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 8270
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 8269 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 8210
Query: 1281 ttgc 1284
||||
Sbjct: 8209 ttgc 8206
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 9193 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 9134
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 9133 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 9074
Query: 775 a 775
|
Sbjct: 9073 a 9073
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 8694 tcacttgtgatgtgagacagaaaaactctatca 8662
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 8610 attgatgccattgaagtacccttgccttcagagtcatacc 8571
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
complete sequence
Length = 128535
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 100685 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 100626
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 100625 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 100566
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 100565 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 100506
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 100505 aactgtcatcaccctcct 100488
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 99004 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 98945
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 98944 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 98885
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 98884 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 98825
Query: 1570 ttgaga 1575
| ||||
Sbjct: 98824 tggaga 98819
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 100069 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 100010
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 100009 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 99950
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 99949 ttgataaggctaatataggcattcagactgaagaacacaggct 99907
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 99195 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 99136
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 99135 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 99086
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 99416 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 99357
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 99356 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 99297
Query: 1281 ttgc 1284
||||
Sbjct: 99296 ttgc 99293
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 100280 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 100221
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 100220 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 100161
Query: 775 a 775
|
Sbjct: 100160 a 100160
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 99781 tcacttgtgatgtgagacagaaaaactctatca 99749
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 99697 attgatgccattgaagtacccttgccttcagagtcatacc 99658
>gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006099, whole
genome shotgun sequence
Length = 43449
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 37624 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 37565
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 37564 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 37505
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 37504 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 37445
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 37444 aactgtcatcaccctcct 37427
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 35943 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 35884
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 35883 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 35824
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 35823 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 35764
Query: 1570 ttgaga 1575
| ||||
Sbjct: 35763 tggaga 35758
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 37008 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 36949
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 36948 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 36889
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 36888 ttgataaggctaatataggcattcagactgaagaacacaggct 36846
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 36134 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 36075
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 36074 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 36025
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 36355 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 36296
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 36295 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 36236
Query: 1281 ttgc 1284
||||
Sbjct: 36235 ttgc 36232
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 37219 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 37160
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 37159 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 37100
Query: 775 a 775
|
Sbjct: 37099 a 37099
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 36720 tcacttgtgatgtgagacagaaaaactctatca 36688
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 36636 attgatgccattgaagtacccttgccttcagagtcatacc 36597
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 1114609 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 1114550
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 1114549 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 1114490
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1114489 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 1114430
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 1114429 aactgtcatcaccctcct 1114412
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 1112928 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 1112869
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 1112868 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 1112809
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 1112808 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 1112749
Query: 1570 ttgaga 1575
| ||||
Sbjct: 1112748 tggaga 1112743
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 1113993 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 1113934
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 1113933 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 1113874
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 1113873 ttgataaggctaatataggcattcagactgaagaacacaggct 1113831
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 1113119 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 1113060
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 1113059 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 1113010
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 1113340 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 1113281
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 1113280 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 1113221
Query: 1281 ttgc 1284
||||
Sbjct: 1113220 ttgc 1113217
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 1114204 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 1114145
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 1114144 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 1114085
Query: 775 a 775
|
Sbjct: 1114084 a 1114084
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 1113705 tcacttgtgatgtgagacagaaaaactctatca 1113673
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 1113621 attgatgccattgaagtacccttgccttcagagtcatacc 1113582
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 5984679 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 5984620
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 5984619 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 5984560
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 5984559 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 5984500
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 5984499 aactgtcatcaccctcct 5984482
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 5982998 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 5982939
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 5982938 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 5982879
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 5982878 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 5982819
Query: 1570 ttgaga 1575
| ||||
Sbjct: 5982818 tggaga 5982813
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 5984063 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5984004
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 5984003 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5983944
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 5983943 ttgataaggctaatataggcattcagactgaagaacacaggct 5983901
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 5983189 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 5983130
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 5983129 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 5983080
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 5983410 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 5983351
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 5983350 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 5983291
Query: 1281 ttgc 1284
||||
Sbjct: 5983290 ttgc 5983287
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 5984274 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5984215
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 5984214 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5984155
Query: 775 a 775
|
Sbjct: 5984154 a 5984154
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 5983775 tcacttgtgatgtgagacagaaaaactctatca 5983743
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 5983691 attgatgccattgaagtacccttgccttcagagtcatacc 5983652
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 6177041 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 6176982
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 6176981 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 6176922
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 6176921 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 6176862
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 6176861 aactgtcatcaccctcct 6176844
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 6175360 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 6175301
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 6175300 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 6175241
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 6175240 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 6175181
Query: 1570 ttgaga 1575
| ||||
Sbjct: 6175180 tggaga 6175175
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 6176425 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 6176366
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 6176365 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 6176306
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 6176305 ttgataaggctaatataggcattcagactgaagaacacaggct 6176263
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 6175551 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 6175492
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 6175491 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 6175442
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 6175772 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 6175713
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 6175712 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 6175653
Query: 1281 ttgc 1284
||||
Sbjct: 6175652 ttgc 6175649
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 6176636 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 6176577
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 6176576 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 6176517
Query: 775 a 775
|
Sbjct: 6176516 a 6176516
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 6176137 tcacttgtgatgtgagacagaaaaactctatca 6176105
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 6176053 attgatgccattgaagtacccttgccttcagagtcatacc 6176014
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 5950276 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 5950217
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 5950216 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 5950157
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 5950156 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 5950097
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 5950096 aactgtcatcaccctcct 5950079
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 5948595 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 5948536
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 5948535 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 5948476
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 5948475 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 5948416
Query: 1570 ttgaga 1575
| ||||
Sbjct: 5948415 tggaga 5948410
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 5949660 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5949601
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 5949600 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5949541
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 5949540 ttgataaggctaatataggcattcagactgaagaacacaggct 5949498
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 5948786 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 5948727
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 5948726 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 5948677
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 5949007 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 5948948
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 5948947 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 5948888
Query: 1281 ttgc 1284
||||
Sbjct: 5948887 ttgc 5948884
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 5949871 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5949812
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 5949811 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5949752
Query: 775 a 775
|
Sbjct: 5949751 a 5949751
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 5949372 tcacttgtgatgtgagacagaaaaactctatca 5949340
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 5949288 attgatgccattgaagtacccttgccttcagagtcatacc 5949249
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 163 bits (82), Expect = 4e-037
Identities = 169/198 (85%)
Strand = Plus / Minus
Query: 460 tctagcaagcggtgagcttcgcgatctcttcaagcaagtacttggactcagctgcgaagt 519
|||||||| | || ||||| || ||||| || |||| |||||||| ||||||||| ||
Sbjct: 5951063 tctagcaacctgtcagcttggctatctcctcgagcatgtacttggcttcagctgcgtggt 5951004
Query: 520 cgaccggtgcttcacccctcacggtgattctctgcctcttctcgttcatgtattcatgct 579
| ||||| ||||||| |||||| ||||| |||||||||||||| |||||||| |||| ||
Sbjct: 5951003 ctaccggagcttcactcctcacagtgatcctctgcctcttctcattcatgtactcattct 5950944
Query: 580 gtgtgacgctgacgcggaacaggtgaggaacccaggtggcttccttgagcttgagaacgt 639
| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 5950943 gagttacgctgacgcggaacaggtgaggaacccaagtagcttccttcagcttgagaaggt 5950884
Query: 640 agctgtcgtccccctcct 657
| ||||| || |||||||
Sbjct: 5950883 aactgtcatcaccctcct 5950866
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 5949382 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 5949323
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 5949322 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 5949263
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 5949262 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 5949203
Query: 1570 ttgaga 1575
| ||||
Sbjct: 5949202 tggaga 5949197
Score = 117 bits (59), Expect = 2e-023
Identities = 137/163 (84%)
Strand = Plus / Minus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| |||||||| |||||||| || ||||||||||| || ||||
Sbjct: 5950447 ctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctgatccaatt 5950388
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||||||||||||||||| |||||| ||||||| ||||||||||| | || ||||||
Sbjct: 5950387 gcctcagtcaccttcttgttgcaggtcttgcaagctcggtaccacatggtttggtcaggc 5950328
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacaggct 939
||||| |||| || ||||| |||||||||||| |||||||
Sbjct: 5950327 ttgataaggctaatataggcattcagactgaagaacacaggct 5950285
Score = 107 bits (54), Expect = 2e-020
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 1287 gagtcatctgctacaacaatgtcacgcttcggtattgtctcgttgtcaatctttctccta 1346
|||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 5949573 gagtcatccgctacaacgatgtcacgctttggaatcgtctcgttgtcaatcttcctccta 5949514
Query: 1347 acactgagtgtgggagatacgctctgaaccacaccaacaatatctacaag 1396
||||| || || ||||||||||||||||| || |||| || |||| ||||
Sbjct: 5949513 acactaagagtaggagatacgctctgaacaaccccaataacatctgcaag 5949464
Score = 103 bits (52), Expect = 3e-019
Identities = 106/124 (85%)
Strand = Plus / Minus
Query: 1161 ccttggaagtcagatacttttaggctctttatcgcaacaacaggagaactgtcaaccatg 1220
||||||||||||||||||||||||||||||||||||| | ||| | | ||| ||||||
Sbjct: 5949794 ccttggaagtcagatacttttaggctctttatcgcaatgataggcgcagagtctaccatg 5949735
Query: 1221 tccaaaagctcttggccagtcgtagtagcaagatcattccagagagaaatagtaacagtt 1280
||||| ||||| || ||||| || || |||||||||||||| ||||| || || ||||||
Sbjct: 5949734 tccaagagctcctgaccagtagttgtggcaagatcattccaaagagatatggttacagtt 5949675
Query: 1281 ttgc 1284
||||
Sbjct: 5949674 ttgc 5949671
Score = 73.8 bits (37), Expect = 3e-010
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 655 cctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgct 714
|||| ||||| |||||||||||||| || || |||||||||| ||| |||| || || |
Sbjct: 5950658 cctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctgat 5950599
Query: 715 cgttgaacacggacacccaagcctcaccagtgggatcggagagcttgatcaccatgatgt 774
| ||||||| || | ||| ||||||||||| || ||||||| |||||| ||||||||||
Sbjct: 5950598 cattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgt 5950539
Query: 775 a 775
|
Sbjct: 5950538 a 5950538
Score = 58.0 bits (29), Expect = 2e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 960 tcactggtgatgtgagacagaaaaactctatca 992
||||| |||||||||||||||||||||||||||
Sbjct: 5950159 tcacttgtgatgtgagacagaaaaactctatca 5950127
Score = 48.1 bits (24), Expect = 0.015
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1044 attggtgccagtgaagtatctttgccttcagagtcatacc 1083
|||| ||||| ||||||| | |||||||||||||||||||
Sbjct: 5950075 attgatgccattgaagtacccttgccttcagagtcatacc 5950036
>gb|CZ168707.1|CZ168707 UCDRDs967_5.1 UCD RDs Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RDs967_5.1, DNA sequence
Length = 535
Score = 123 bits (62), Expect = 3e-025
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 1390 ctacaagctccctgccaccgacgtatggtcctagctgatcaatcttgacaaggttgtatt 1449
|||| |||||||||||||| || ||||| |||||||||||||||||||||| |||||| |
Sbjct: 524 ctactagctccctgccaccaacatatggccctagctgatcaatcttgacaaagttgtact 465
Query: 1450 gcactggtggaaggaaagtctccccctctgcttcttcaacaatagcattctcgtttagtg 1509
| | |||| | ||||| || ||||| ||||| ||||||| ||||||||| || || |
Sbjct: 464 gaatctgtgggataaaagtttcgccctcagcttcctcaacaacagcattctcattcaggg 405
Query: 1510 acaactcatagtcatttttgactgtcttgaactgcttgttggcaattctaagagatcctt 1569
|| ||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||
Sbjct: 404 tcatctcgtagtcattatggacagtcttgaactgcttgttggcgactctgagagatcctt 345
Query: 1570 ttgaga 1575
| ||||
Sbjct: 344 tggaga 339
>gb|CZ167670.1|CZ167670 UCDRDs852_5.1 UCD RDs Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RDs852_5.1, DNA sequence
Length = 510
Score = 101 bits (51), Expect = 1e-018
Identities = 135/163 (82%)
Strand = Plus / Minus
Query: 1413 tatggtcctagctgatcaatcttgacaaggttgtattgcactggtggaaggaaagtctcc 1472
||||| |||||||||||||||||||||| |||||| || | |||| | ||||| ||
Sbjct: 502 tatggccctagctgatcaatcttgacaaagttgtactgaatctgtgggataaaagtttcg 443
Query: 1473 ccctctgcttcttcaacaatagcattctcgtttagtgacaactcatagtcatttttgact 1532
||||| ||||| ||||||| ||||||||| || || | || ||| |||||||| | |||
Sbjct: 442 ccctcagcttcctcaacaacagcattctcattcagggtcatctcgtagtcattatggaca 383
Query: 1533 gtcttgaactgcttgttggcaattctaagagatccttttgaga 1575
|||||||||||||||||||| | ||| ||||||||||| ||||
Sbjct: 382 gtcttgaactgcttgttggcgactctgagagatcctttggaga 340
>gb|AQ396394.2|AQ396394 nbxb0067P07r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0067P07r, DNA sequence
Length = 987
Score = 58.0 bits (29), Expect = 2e-005
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 777 ctcagcgagcactcagagtcattcttttggcacccctcgcaccagtatccagacccaaaa 836
||||| |||||||||| ||| |||| ||| |||| || ||||||||||| || ||||
Sbjct: 468 ctcagtgagcactcagcatcactcttctgggacccttcacaccagtatcctgagccaatt 527
Query: 837 gcttcagtcaccttcttgttacaggtcgtgcaagcacggtaccacatattctgatcaggc 896
|| ||| || |||||||| ||||| ||||||| ||||||||||| | || ||||||
Sbjct: 528 gcctcacgtacgttcttgttgtaggtcttgcaagctcggtaccacatggtttggtcaggc 587
Query: 897 ttgatgtggcttatgatggcatacagactgaagaaaacagg 937
||||| |||| || ||||| |||||||||||| |||||
Sbjct: 588 ttgataaggctaatataggcattcagactgaagaacacagg 628
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,077,219
Number of Sequences: 438736
Number of extensions: 2077219
Number of successful extensions: 11335
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11121
Number of HSP's gapped (non-prelim): 193
length of query: 1603
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1581
effective length of database: 2,790,767,724
effective search space: 4412203771644
effective search space used: 4412203771644
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)