BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading y... 192 1e-046
gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (j... 190 6e-046
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 190 6e-046
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 190 6e-046
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 190 6e-046
gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) c... 190 6e-046
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 190 6e-046
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 190 6e-046
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 190 6e-046
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 190 6e-046
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 190 6e-046
gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root O... 184 4e-044
gb|AU082336.1|AU082336 AU082336 Rice immature leaf includin... 184 4e-044
gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (j... 184 4e-044
gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading y... 184 4e-044
gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3... 174 3e-041
gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (ja... 174 3e-041
gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 1... 174 3e-041
gb|AU070140.1|AU070140 AU070140 Rice cDNA from immature lea... 165 3e-038
gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 1... 165 3e-038
gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda pha... 153 1e-034
gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3... 141 5e-031
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 141 5e-031
gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) c... 141 5e-031
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 141 5e-031
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (jap... 121 4e-025
gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (jap... 121 4e-025
gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cD... 121 4e-025
gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda pha... 121 4e-025
gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda pha... 121 4e-025
gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, c... 121 4e-025
dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA... 121 4e-025
dbj|AP004883.3| Oryza sativa (japonica cultivar-group) geno... 121 4e-025
dbj|AP004037.3| Oryza sativa (japonica cultivar-group) geno... 121 4e-025
gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) c... 121 4e-025
ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA 121 4e-025
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 121 4e-025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 121 4e-025
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 121 4e-025
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 121 4e-025
gb|AY466109.1| Oryza sativa (japonica cultivar-group) lipid... 111 4e-022
ref|XM_473448.1| Oryza sativa (japonica cultivar-group), p... 111 4e-022
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 111 4e-022
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 111 4e-022
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 111 4e-022
gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) c... 109 2e-021
ref|XM_473449.1| Oryza sativa (japonica cultivar-group), p... 109 2e-021
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 109 2e-021
gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root O... 107 7e-021
gb|CA999379.1|CA999379 S234G_H12 Rice cold stress germinati... 101 4e-019
gb|AU082161.1|AU082161 AU082161 Rice root Oryza sativa (jap... 96 3e-017
dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15... 96 3e-017
gb|AACV01022076.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
ref|NM_197681.1| Oryza sativa (japonica cultivar-group) put... 96 3e-017
gb|AU184007.1|AU184007 AU184007 Rice root Oryza sativa (jap... 94 1e-016
gb|AU184680.1|AU184680 AU184680 Rice root Oryza sativa (jap... 90 2e-015
gb|AU184738.1|AU184738 AU184738 Rice root Oryza sativa (jap... 90 2e-015
gb|AU032568.1|AU032568 AU032568 Rice green shoot Oryza sati... 84 1e-013
gb|AU076227.1|AU076227 AU076227 Rice cDNA from young root O... 84 1e-013
gb|CB679219.1|CB679219 OSJNEf02G23.r OSJNEf Oryza sativa (j... 84 1e-013
gb|CB679517.1|CB679517 OSJNEf03B23.f OSJNEf Oryza sativa (j... 84 1e-013
dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-013
dbj|AK063684.1| Oryza sativa (japonica cultivar-group) cDNA... 84 1e-013
ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA 84 1e-013
gb|AU029427.1|AU029427 AU029427 Rice panicle shorter than 3... 82 4e-013
gb|AU081583.1|AU081583 AU081583 Rice cDNA from young root O... 80 2e-012
gb|AU082158.1|AU082158 AU082158 Rice root Oryza sativa (jap... 80 2e-012
gb|CA756160.1|CA756160 BR030036000_PLATE_D01_4_012.ab1 OA O... 80 2e-012
gb|CB685490.1|CB685490 OSJNEf15O17.f OSJNEf Oryza sativa (j... 80 2e-012
gb|CF325935.1|CF325935 JMT1--04-K07.g1 AtJMT-overexpressing... 80 2e-012
gb|CV727621.1|CV727621 14Salt--05-N17.b1 Salt treated rice ... 80 2e-012
dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA... 80 2e-012
gb|AACV01022075.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
ref|NM_197679.1| Oryza sativa (japonica cultivar-group) put... 80 2e-012
gb|AU174369.1|AU174369 AU174369 Rice shoot Oryza sativa (ja... 78 6e-012
gb|AU184008.1|AU184008 AU184008 Rice root Oryza sativa (jap... 78 6e-012
gb|AU101404.1|AU101404 AU101404 Rice panicle shorter than 3... 76 2e-011
gb|AU161822.1|AU161822 AU161822 Rice shoot Oryza sativa (ja... 76 2e-011
gb|AU184329.1|AU184329 AU184329 Rice root Oryza sativa (jap... 76 2e-011
gb|CX728264.1|CX728264 OSJNEf03B23.r OSJNEf Oryza sativa (j... 76 2e-011
gb|AQ796380.1|AQ796380 nbxb0063M17f CUGI Rice BAC Library O... 72 4e-010
gb|AU069961.1|AU069961 AU069961 Rice panicle shorter than 3... 72 4e-010
gb|CV724500.1|CV724500 14Salt--01-B21.b1 Salt treated rice ... 72 4e-010
gb|CV725574.1|CV725574 14Salt--02-L17.g1 Salt treated rice ... 72 4e-010
gb|CV727251.1|CV727251 14Salt--05-E24.g1 Salt treated rice ... 72 4e-010
gb|CV727305.1|CV727305 14Salt--05-G05.b1 Salt treated rice ... 72 4e-010
gb|CV727622.1|CV727622 14Salt--05-N17.g1 Salt treated rice ... 72 4e-010
gb|CV728268.1|CV728268 14Salt--06-O07.b1 Salt treated rice ... 72 4e-010
dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK063090.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AACV01012630.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|NM_197680.1| Oryza sativa (japonica cultivar-group) put... 72 4e-010
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|AU081582.1|AU081582 AU081582 Rice cDNA from young root O... 68 6e-009
gb|CB643292.1|CB643292 OSJNEb03O11.r OSJNEb Oryza sativa (j... 68 6e-009
gb|AU032570.1|AU032570 AU032570 Rice green shoot Oryza sati... 66 2e-008
gb|AU173792.1|AU173792 AU173792 Rice root Oryza sativa (jap... 66 2e-008
gb|AU032244.1|AU032244 AU032244 Rice root Oryza sativa (jap... 64 9e-008
gb|BE039206.1|BE039206 OA01C08 OA Oryza sativa (japonica cu... 64 9e-008
gb|CA755754.1|CA755754 BR030027000_PLATE_F11_86_094.ab1 OA ... 64 9e-008
gb|CV722738.1|CV722738 root--01-G20.g1 Rice root lambda pha... 64 9e-008
gb|CV723709.1|CV723709 root--04-I08.g1 Rice root lambda pha... 64 9e-008
gb|CV724280.1|CV724280 root--06-H08.g1 Rice root lambda pha... 64 9e-008
gb|CV727250.1|CV727250 14Salt--05-E24.b1 Salt treated rice ... 64 9e-008
gb|AACV01022074.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|NM_197674.1| Oryza sativa (japonica cultivar-group) put... 64 9e-008
gb|AU184269.1|AU184269 AU184269 Rice root Oryza sativa (jap... 62 4e-007
dbj|AK063037.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
gb|AQ287619.1|AQ287619 nbxb0016C05f CUGI Rice BAC Library O... 60 1e-006
ref|NM_197675.1| Oryza sativa (japonica cultivar-group) put... 60 1e-006
gb|AU173085.1|AU173085 AU173085 Rice root Oryza sativa (jap... 58 6e-006
gb|CV725022.1|CV725022 14Salt--01-O08.b1 Salt treated rice ... 56 2e-005
gb|CV725023.1|CV725023 14Salt--01-O08.g1 Salt treated rice ... 56 2e-005
dbj|AK062848.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AC123594.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|AACV01021306.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NM_195931.1| Oryza sativa (japonica cultivar-group) put... 56 2e-005
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 56 2e-005
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CA755383.1|CA755383 BR030019000_PLATE_E10_77_082.ab1 OA ... 54 9e-005
gb|CF290928.1|CF290928 14ROOT--01-C13.g1 Rice root plasmid ... 54 9e-005
gb|CF291056.1|CF291056 14ROOT--01-F09.b1 Rice root plasmid ... 54 9e-005
gb|CF291057.1|CF291057 14ROOT--01-F09.g1 Rice root plasmid ... 54 9e-005
gb|CV722920.1|CV722920 root--01-P12.g1 Rice root lambda pha... 54 9e-005
gb|CV724579.1|CV724579 14Salt--01-D21.b1 Salt treated rice ... 54 9e-005
gb|CV725664.1|CV725664 14Salt--02-N21.b1 Salt treated rice ... 54 9e-005
gb|CV725882.1|CV725882 14Salt--03-D14.g1 Salt treated rice ... 54 9e-005
gb|CV728302.1|CV728302 14Salt--06-P02.b1 Salt treated rice ... 54 9e-005
gb|CV728303.1|CV728303 14Salt--06-P02.g1 Salt treated rice ... 54 9e-005
dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid... 54 9e-005
dbj|AP004557.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01018756.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AU082154.1|AU082154 AU082154 Rice root Oryza sativa (jap... 52 3e-004
gb|AQ365861.2|AQ365861 nbxb0064H21f CUGI Rice BAC Library O... 50 0.001
gb|AU075821.1|AU075821 AU075821 Rice root Oryza sativa (jap... 50 0.001
gb|AU075822.1|AU075822 AU075822 Rice root Oryza sativa (jap... 50 0.001
gb|AU082152.1|AU082152 AU082152 Rice root Oryza sativa (jap... 50 0.001
gb|AU082153.1|AU082153 AU082153 Rice root Oryza sativa (jap... 50 0.001
gb|AU082159.1|AU082159 AU082159 Rice root Oryza sativa (jap... 50 0.001
gb|AU097490.1|AU097490 AU097490 Rice shoot Oryza sativa (ja... 50 0.001
gb|CA758859.1|CA758859 BR030041000_PLATE_B05_34_043.ab1 OA ... 50 0.001
gb|CB000988.1|CB000988 S234F_A10 Rice cold stress germinati... 50 0.001
gb|CD670796.1|CD670796 OsMR213 5MT resistant rice mutant cD... 50 0.001
gb|L27209.1|RICRCC2 Oryza sativa root-specific RCc2 mRNA, c... 50 0.001
gb|L27210.1|RICRCG2 Oryza sativa root-specific protein (RCg... 50 0.001
dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
gb|AACV01022072.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01022073.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NM_197671.1| Oryza sativa (japonica cultivar-group) put... 50 0.001
ref|NM_197672.1| Oryza sativa (japonica cultivar-group) put... 50 0.001
gb|AU161559.1|AU161559 AU161559 Rice shoot Oryza sativa (ja... 48 0.005
gb|CB000875.1|CB000875 S345K_D02 Rice cold stress germinati... 48 0.005
gb|CF291694.1|CF291694 14ROOT--02-D16.b1 Rice root plasmid ... 48 0.005
gb|CV724379.1|CV724379 root--06-N13.g1 Rice root lambda pha... 48 0.005
gb|D40727.1|D40727 RICS2860A Rice shoot Oryza sativa (japon... 46 0.021
gb|AU082157.1|AU082157 AU082157 Rice root Oryza sativa (jap... 46 0.021
gb|AU184038.1|AU184038 AU184038 Rice root Oryza sativa (jap... 46 0.021
gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 ... 46 0.021
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 46 0.021
ref|NT_107100.1| Oryza sativa chromosome 11 BAC clone OSJNB... 46 0.021
gb|AACV01008103.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|AACV01008126.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|AACV01022942.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.021
ref|NM_185028.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.021
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.021
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 46 0.021
dbj|AP003560.2| Oryza sativa (japonica cultivar-group) geno... 46 0.021
dbj|AP003309.3| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|AC137922.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|AC135558.6| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|D41125.1|D41125 RICS3415A Rice shoot Oryza sativa (japon... 44 0.084
gb|AU078328.1|AU078328 AU078328 Rice panicle at ripening st... 44 0.084
gb|AU197620.1|AU197620 AU197620 Rice root Oryza sativa (jap... 44 0.084
dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.084
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 44 0.084
gb|AACV01013105.1| Oryza sativa (japonica cultivar-group) c... 44 0.084
gb|AACV01014669.1| Oryza sativa (japonica cultivar-group) c... 44 0.084
dbj|AB023482.2| Oryza sativa (japonica cultivar-group) geno... 44 0.084
dbj|AP002864.2| Oryza sativa (japonica cultivar-group) geno... 44 0.084
ref|NM_195926.1| Oryza sativa (japonica cultivar-group) put... 44 0.084
ref|NM_197676.1| Oryza sativa (japonica cultivar-group) put... 44 0.084
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 44 0.084
ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.084
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.084
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.084
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.084
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.084
gb|D39102.1|D39102 RICR1969A Rice root Oryza sativa (japoni... 42 0.33
dbj|AP003834.1| Oryza sativa (japonica cultivar-group) chro... 42 0.33
dbj|AK067172.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.33
dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.33
emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC O... 42 0.33
dbj|AP003913.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005817.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005783.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 42 0.33
gb|AACV01015973.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01016951.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01018281.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|AACV01025041.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
ref|NM_195930.1| Oryza sativa (japonica cultivar-group) put... 42 0.33
ref|XM_477803.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
ref|XM_479401.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
ref|XM_481980.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.33
dbj|AP003833.3| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP005184.5| Oryza sativa (japonica cultivar-group) geno... 42 0.33
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.33
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-C10, mRNA sequence
Length = 459
Score = 192 bits (97), Expect = 1e-046
Identities = 205/241 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 273 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 214
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 213 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 154
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 153 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 94
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||| | |||| |||||||| ||||||| ||| |||||||| ||||||||||||| |||
Sbjct: 93 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcgtgtc 34
Query: 390 c 390
|
Sbjct: 33 c 33
>gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 5', mRNA sequence
Length = 643
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 272 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 213
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 212 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 153
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 152 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 93
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 92 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 37
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 63697 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 63756
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 63757 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 63816
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 63817 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 63876
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 63877 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 63932
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 72746 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 72805
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 72806 ggccttgatggcggtgcagaggca 72829
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 72918 agcacgttggcgcacacgcccagcttcagcgcgtc 72952
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 75622 agcacgttggcgcacacgctcagcttcagcgcgtc 75656
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 75486 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 75533
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 36026 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 35967
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 35966 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 35907
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 35906 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 35847
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 35846 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 35791
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 26975 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 26916
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 26915 ggccttgatggcggtgcagaggca 26892
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 26803 agcacgttggcgcacacgcccagcttcagcgcgtc 26769
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 24099 agcacgttggcgcacacgctcagcttcagcgcgtc 24065
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 24235 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 24188
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 132959 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 132900
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 132899 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 132840
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 132839 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 132780
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 132779 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 132724
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 123908 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 123849
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 123848 ggccttgatggcggtgcagaggca 123825
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 123736 agcacgttggcgcacacgcccagcttcagcgcgtc 123702
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 121032 agcacgttggcgcacacgctcagcttcagcgcgtc 120998
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 121168 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 121121
>gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005727, whole
genome shotgun sequence
Length = 11983
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 11232 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 11291
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 11292 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 11351
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 11352 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 11411
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 11412 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 11467
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 198959 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 198900
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 198899 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 198840
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 198839 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 198780
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 198779 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 198724
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 189908 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 189849
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 189848 ggccttgatggcggtgcagaggca 189825
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 189736 agcacgttggcgcacacgcccagcttcagcgcgtc 189702
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 187032 agcacgttggcgcacacgctcagcttcagcgcgtc 186998
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 187168 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 187121
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 205365 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 205306
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 205305 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 205246
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 205245 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 205186
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 205185 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 205130
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 397727 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 397668
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 397667 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 397608
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 397607 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 397548
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 397547 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 397492
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||| | |||||||||||||||
Sbjct: 34345852 agcacgttggcgcacacacgcagcttcagcgcgtc 34345818
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||| | |||||||||||||||
Sbjct: 34097616 agcacgttggcgcacacacgcagcttcagcgcgtc 34097650
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 198959 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 198900
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 198899 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 198840
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 198839 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 198780
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 198779 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 198724
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 189908 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 189849
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 189848 ggccttgatggcggtgcagaggca 189825
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 189736 agcacgttggcgcacacgcccagcttcagcgcgtc 189702
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 187032 agcacgttggcgcacacgctcagcttcagcgcgtc 186998
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 187168 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 187121
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||| | |||||||||||||||
Sbjct: 33204682 agcacgttggcgcacacacgcagcttcagcgcgtc 33204716
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 190 bits (96), Expect = 6e-046
Identities = 201/236 (85%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 198959 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 198900
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 198899 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 198840
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 198839 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 198780
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 198779 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 198724
Score = 71.9 bits (36), Expect = 4e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 180 gcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgtt 239
||||||||||| ||||||| ||||| || ||| | ||||| ||||||||| ||||||||
Sbjct: 189908 gcagtagttgaggaggaggacgaggtcgacggggacgttgatgttgatgccgaggacgtt 189849
Query: 240 ggccctgaggacggtgcagaggca 263
|||| ||| | |||||||||||||
Sbjct: 189848 ggccttgatggcggtgcagaggca 189825
Score = 61.9 bits (31), Expect = 4e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||||||||||||||||||||
Sbjct: 189736 agcacgttggcgcacacgcccagcttcagcgcgtc 189702
Score = 54.0 bits (27), Expect = 9e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||||| |||||||||||||||
Sbjct: 187032 agcacgttggcgcacacgctcagcttcagcgcgtc 186998
Score = 48.1 bits (24), Expect = 0.005
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||| |||||||| |||| ||||||| ||| | |||||||||||||
Sbjct: 187168 gttgagattgatgccgaggatgttggccttgatggcggtgcagaggca 187121
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| |||||||||||| | |||||||||||||||
Sbjct: 33114172 agcacgttggcgcacacacgcagcttcagcgcgtc 33114206
>gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 413
Score = 184 bits (93), Expect = 4e-044
Identities = 180/209 (86%)
Strand = Plus / Minus
Query: 177 gccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggac 236
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 412 gccgcagtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggat 353
Query: 237 gttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggat 296
|||||| | |||| |||||||||||||||| || ||||| ||||| || || ||||||||
Sbjct: 352 gttggcgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggat 293
Query: 297 cagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcag 356
|| |||| |||||| || |||||||||||||| | |||| |||||||| |||||
Sbjct: 292 gaggctgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcag 233
Query: 357 caagttggcgcacacgcccagcttcagcg 385
|| ||| |||||||| |||||||||||||
Sbjct: 232 cacgttcgcgcacacccccagcttcagcg 204
>gb|AU082336.1|AU082336 AU082336 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50579, mRNA sequence
Length = 517
Score = 184 bits (93), Expect = 4e-044
Identities = 180/209 (86%)
Strand = Plus / Minus
Query: 177 gccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggac 236
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 516 gccgcagtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggat 457
Query: 237 gttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggat 296
|||||| | |||| |||||||||||||||| || ||||| ||||| || || ||||||||
Sbjct: 456 gttggcgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggat 397
Query: 297 cagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcag 356
|| |||| |||||| || |||||||||||||| | |||| |||||||| |||||
Sbjct: 396 gaggctgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcag 337
Query: 357 caagttggcgcacacgcccagcttcagcg 385
|| ||| |||||||| |||||||||||||
Sbjct: 336 cacgttcgcgcacacccccagcttcagcg 308
>gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 3', mRNA sequence
Length = 806
Score = 184 bits (93), Expect = 4e-044
Identities = 200/236 (84%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 370 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 429
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| ||||||| |||||||| ||
Sbjct: 430 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcanaggcacacggc 489
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 490 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 549
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttcagcg 385
||| | |||| |||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct: 550 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttcagcg 605
>gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-C09, mRNA sequence
Length = 453
Score = 184 bits (93), Expect = 4e-044
Identities = 198/233 (84%)
Strand = Plus / Minus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 242 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgat 183
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| ||||||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 182 ggggaggttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 123
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 122 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 63
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagcttca 382
||| | |||| |||||||| ||||||| ||| |||||||| ||||||||||
Sbjct: 62 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagcttca 10
>gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30638, mRNA sequence
Length = 472
Score = 174 bits (88), Expect = 3e-041
Identities = 175/204 (85%)
Strand = Plus / Minus
Query: 182 agtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgttgg 241
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct: 472 agtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggatgttgg 413
Query: 242 ccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcg 301
| | |||| |||||||||||||||| || ||||| ||||| || || |||||||| ||
Sbjct: 412 cgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggatgaggc 353
Query: 302 tgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagt 361
|||| |||||| || |||||||||||||| | |||| |||||||| ||||||| ||
Sbjct: 352 tgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcagcacgt 293
Query: 362 tggcgcacacgcccagcttcagcg 385
| |||||||| |||||||||||||
Sbjct: 292 tcgcgcacacccccagcttcagcg 269
>gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5454, mRNA sequence
Length = 367
Score = 174 bits (88), Expect = 3e-041
Identities = 175/204 (85%)
Strand = Plus / Minus
Query: 182 agtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgttgg 241
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct: 367 agtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggatgttgg 308
Query: 242 ccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcg 301
| | |||| |||||||||||||||| || ||||| ||||| || || |||||||| ||
Sbjct: 307 cgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggatgaggc 248
Query: 302 tgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagt 361
|||| |||||| || |||||||||||||| | |||| |||||||| ||||||| ||
Sbjct: 247 tgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcagcacgt 188
Query: 362 tggcgcacacgcccagcttcagcg 385
| |||||||| |||||||||||||
Sbjct: 187 tcgcgcacacccccagcttcagcg 164
>gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20775, mRNA sequence
Length = 587
Score = 174 bits (88), Expect = 3e-041
Identities = 175/204 (85%)
Strand = Plus / Minus
Query: 182 agtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgttgg 241
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct: 587 agtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggatgttgg 528
Query: 242 ccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcg 301
| | |||| |||||||||||||||| || ||||| ||||| || || |||||||| ||
Sbjct: 527 cgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggatgaggc 468
Query: 302 tgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagt 361
|||| |||||| || |||||||||||||| | |||| |||||||| ||||||| ||
Sbjct: 467 tgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcagcacgt 408
Query: 362 tggcgcacacgcccagcttcagcg 385
| |||||||| |||||||||||||
Sbjct: 407 tcgcgcacacccccagcttcagcg 384
>gb|AU070140.1|AU070140 AU070140 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50146_2A, mRNA sequence
Length = 200
Score = 165 bits (83), Expect = 3e-038
Identities = 167/195 (85%)
Strand = Plus / Plus
Query: 177 gccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggac 236
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 2 gccgcagtagttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggat 61
Query: 237 gttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggat 296
|||||| | |||| |||||||||||||||| || ||||| ||||| || || ||||||||
Sbjct: 62 gttggcgcggagggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggat 121
Query: 297 cagcgtgcagcacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcag 356
|| |||| |||||| || |||||||||||||| | |||| |||||||| |||||
Sbjct: 122 gaggctgcaacacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcag 181
Query: 357 caagttggcgcacac 371
|| ||| ||||||||
Sbjct: 182 cacgttcgcgcacac 196
>gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20248, mRNA sequence
Length = 327
Score = 165 bits (83), Expect = 3e-038
Identities = 170/199 (85%)
Strand = Plus / Minus
Query: 187 ttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccaggacgttggccctg 246
|||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| | |
Sbjct: 327 ttgacgaggaggctgaggttgatggggaggttgaggttgatgccaaggatgttggcgcgg 268
Query: 247 aggacggtgcagaggcacaccgccgcctccaggtccgccagcccctggatcagcgtgcag 306
||| |||||||||||||||| || ||||| ||||| || || |||||||| || ||||
Sbjct: 267 agggcggtgcagaggcacacggcggcctcaaggtcggcgaggccctggatgaggctgcaa 208
Query: 307 cacggcgtcctgggcggcgtccccagggtcgcgttgatcagcccgttcagcaagttggcg 366
|||||| || |||||||||||||| | |||| |||||||| ||||||| ||| |||
Sbjct: 207 cacggctgccgcggcggcgtccccagctgcacgtttatcagcccattcagcacgttcgcg 148
Query: 367 cacacgcccagcttcagcg 385
||||| |||||||||||||
Sbjct: 147 cacacccccagcttcagcg 129
>gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-D03, mRNA sequence
Length = 484
Score = 153 bits (77), Expect = 1e-034
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 150 gcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggttgat 209
|||||||||||| || |||||| | ||||||||||||||||||||||||||||||||
Sbjct: 230 gcactggaagccggaggggacggagcggccgcagtagttgacgaggaggctgaggttgag 289
Query: 210 gggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgc 269
||| | |||||||||||||| |||| |||||| | |||| |||||||||||||||| ||
Sbjct: 290 gggaggtttgaggttgatgccaaggatgttggcgcggagggcggtgcagaggcacacggc 349
Query: 270 cgcctccaggtccgccagcccctggatcagcgtgcagcacggcgtcctgggcggcgtccc 329
||||| ||||| || || |||||||| || |||| |||||| || |||||||||||
Sbjct: 350 ggcctcaaggtcggcgaggccctggatgaggctgcaacacggctgccgcggcggcgtccc 409
Query: 330 cagggtcgcgttgatcagcccgttcagcaagttggcgcacacgcccagc 378
||| | |||| |||||||| ||||||| ||| |||||||| ||||||
Sbjct: 410 cagctgcacgtttatcagcccattcagcacgttcgcgcacacccccagc 458
>gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30571, mRNA sequence
Length = 711
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 351 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 292
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 291 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 232
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 231 agcccgttcagcagcgggcagcacggc 205
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 166 cagcacgttcgcgcacacccccagcttcagcgcgtcc 130
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 66844 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 66903
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 66904 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 66963
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 66964 agcccgttcagcagcgggcagcacggc 66990
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 67029 cagcacgttcgcgcacacccccagcttcagcgcgtcc 67065
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 67170 gccgccgcctccgccgctgctgccgccgccacc 67202
>gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022087, whole
genome shotgun sequence
Length = 9818
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 6620 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 6561
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 6560 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 6501
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 6500 agcccgttcagcagcgggcagcacggc 6474
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 6435 cagcacgttcgcgcacacccccagcttcagcgcgtcc 6399
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 6294 gccgccgcctccgccgctgctgccgccgccacc 6262
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 3189709 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 3189650
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 3189649 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 3189590
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 3189589 agcccgttcagcagcgggcagcacggc 3189563
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| |||||||| ||||||||||| |
Sbjct: 3100365 tgccgcagttgttgaggatgaggctgaggtcgatggggaggttgagcttgatgcccagca 3100424
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 3100425 cgttggccttgatggcggtgcagaggca 3100452
Score = 79.8 bits (40), Expect = 2e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| | ||||||||||| ||| || |
Sbjct: 3093651 tgccgcagttgttgaggatgaggctgaggtcgatggggatgttgaggttgaggccgagca 3093710
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 3093711 cgttggccttgatggcggtgcagaggca 3093738
Score = 71.9 bits (36), Expect = 4e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| || ||| |||| ||| |||||||| || |
Sbjct: 3097097 tgccgcagttgttgaggatgaggctgaggtcgacggggaggtcgagcttgatgccgagca 3097156
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 3097157 cgttggccttgacggcggtgcagaggca 3097184
Score = 63.9 bits (32), Expect = 9e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcc 273
|||||||||||||||||||| || |||||| ||| | ||||||||||||| || || ||
Sbjct: 3070550 aggttgaggttgatgcccagcacattggccttgacggcggtgcagaggcagacggcggcg 3070609
Query: 274 tccaggtccgccagcccctggatcagcgtgcagcac 309
|| ||||| || | |||||| | ||||| |||||||
Sbjct: 3070610 tcgaggtcggcgatcccctgcagcagcgagcagcac 3070645
Score = 60.0 bits (30), Expect = 1e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 220 aggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccagg 279
|||||||||||||| ||||||||| ||| | ||||||||||||| || || || || |||
Sbjct: 3073849 aggttgatgcccagcacgttggccttgacggcggtgcagaggcagacggcggcgtcgagg 3073908
Query: 280 tccgccagcccctggatcagcgtgcagcac 309
|| || | |||||| | ||||| |||||||
Sbjct: 3073909 tcggcgatcccctgcagcagcgagcagcac 3073938
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 3189524 cagcacgttcgcgcacacccccagcttcagcgcgtcc 3189488
Score = 50.1 bits (25), Expect = 0.001
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg---ccca 232
||||||||| ||||| || ||||||||| | || ||| | ||||||||||||| || |
Sbjct: 3065763 tgccgcagttgttgaggatgaggctgagatcgacggggatgttgaggttgatgatcccaa 3065822
Query: 233 ggacgttggccctgaggacggtgcagaggca 263
| ||||||||| ||| | |||||||||||||
Sbjct: 3065823 gaacgttggccttgatggcggtgcagaggca 3065853
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 349 ccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| |||| |||||||||||| | |||||||||||||||
Sbjct: 3061566 ccgttgagcacgttggcgcacacccgcagcttcagcgcgtc 3061606
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||| |||||||||||||||
Sbjct: 3100543 cagcacgttggcgcacacgtgcagcttcagcgcgtc 3100578
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||| |||||||||||||||
Sbjct: 3093830 agcacgttggcgcacacgtgcagcttcagcgcgtc 3093864
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||||| || ||||| || ||||||||| ||| | |||||||||||||
Sbjct: 3077958 aggttgagtttcatgccgagcacgttggccttgacggcggtgcagaggca 3078007
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 3189383 gccgccgcctccgccgctgctgccgccgccacc 3189351
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 3073972 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 3074024
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 3070679 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 3070731
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 9242300 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 9242241
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 9242240 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 9242181
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 9242180 agcccgttcagcagcgggcagcacggc 9242154
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| |||||||| ||||||||||| |
Sbjct: 9124165 tgccgcagttgttgaggatgaggctgaggtcgatggggaggttgagcttgatgcccagca 9124224
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 9124225 cgttggccttgatggcggtgcagaggca 9124252
Score = 79.8 bits (40), Expect = 2e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| | ||||||||||| ||| || |
Sbjct: 9117423 tgccgcagttgttgaggatgaggctgaggtcgatggggatgttgaggttgaggccgagca 9117482
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 9117483 cgttggccttgatggcggtgcagaggca 9117510
Score = 71.9 bits (36), Expect = 4e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| || ||| |||| ||| |||||||| || |
Sbjct: 9120869 tgccgcagttgttgaggatgaggctgaggtcgacggggaggtcgagcttgatgccgagca 9120928
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 9120929 cgttggccttgacggcggtgcagaggca 9120956
Score = 63.9 bits (32), Expect = 9e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcc 273
|||||||||||||||||||| || |||||| ||| | ||||||||||||| || || ||
Sbjct: 9104169 aggttgaggttgatgcccagcacattggccttgacggcggtgcagaggcagacggcggcg 9104228
Query: 274 tccaggtccgccagcccctggatcagcgtgcagcac 309
|| ||||| || | |||||| | ||||| |||||||
Sbjct: 9104229 tcgaggtcggcgatcccctgcagcagcgagcagcac 9104264
Score = 60.0 bits (30), Expect = 1e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 220 aggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccagg 279
|||||||||||||| ||||||||| ||| | ||||||||||||| || || || || |||
Sbjct: 9107468 aggttgatgcccagcacgttggccttgacggcggtgcagaggcagacggcggcgtcgagg 9107527
Query: 280 tccgccagcccctggatcagcgtgcagcac 309
|| || | |||||| | ||||| |||||||
Sbjct: 9107528 tcggcgatcccctgcagcagcgagcagcac 9107557
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 9242115 cagcacgttcgcgcacacccccagcttcagcgcgtcc 9242079
Score = 50.1 bits (25), Expect = 0.001
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg---ccca 232
||||||||| ||||| || ||||||||| | || ||| | ||||||||||||| || |
Sbjct: 9100250 tgccgcagttgttgaggatgaggctgagatcgacggggatgttgaggttgatgatcccaa 9100309
Query: 233 ggacgttggccctgaggacggtgcagaggca 263
| ||||||||| ||| | |||||||||||||
Sbjct: 9100310 gaacgttggccttgatggcggtgcagaggca 9100340
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 349 ccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| |||| |||||||||||| | |||||||||||||||
Sbjct: 9096136 ccgttgagcacgttggcgcacacccgcagcttcagcgcgtc 9096176
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||| |||||||||||||||
Sbjct: 9124343 cagcacgttggcgcacacgtgcagcttcagcgcgtc 9124378
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||| |||||||||||||||
Sbjct: 9117602 agcacgttggcgcacacgtgcagcttcagcgcgtc 9117636
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||||| || ||||| || ||||||||| ||| | |||||||||||||
Sbjct: 9111578 aggttgagtttcatgccgagcacgttggccttgacggcggtgcagaggca 9111627
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 9241974 gccgccgcctccgccgctgctgccgccgccacc 9241942
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 9107591 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 9107643
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 9104298 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 9104350
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 20108094 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 20108035
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 20108034 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 20107975
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 20107974 agcccgttcagcagcgggcagcacggc 20107948
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| |||||||| ||||||||||| |
Sbjct: 19989959 tgccgcagttgttgaggatgaggctgaggtcgatggggaggttgagcttgatgcccagca 19990018
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 19990019 cgttggccttgatggcggtgcagaggca 19990046
Score = 79.8 bits (40), Expect = 2e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| | ||||||||||| ||| || |
Sbjct: 19983217 tgccgcagttgttgaggatgaggctgaggtcgatggggatgttgaggttgaggccgagca 19983276
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 19983277 cgttggccttgatggcggtgcagaggca 19983304
Score = 71.9 bits (36), Expect = 4e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| || ||| |||| ||| |||||||| || |
Sbjct: 19986663 tgccgcagttgttgaggatgaggctgaggtcgacggggaggtcgagcttgatgccgagca 19986722
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 19986723 cgttggccttgacggcggtgcagaggca 19986750
Score = 63.9 bits (32), Expect = 9e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcc 273
|||||||||||||||||||| || |||||| ||| | ||||||||||||| || || ||
Sbjct: 19969963 aggttgaggttgatgcccagcacattggccttgacggcggtgcagaggcagacggcggcg 19970022
Query: 274 tccaggtccgccagcccctggatcagcgtgcagcac 309
|| ||||| || | |||||| | ||||| |||||||
Sbjct: 19970023 tcgaggtcggcgatcccctgcagcagcgagcagcac 19970058
Score = 60.0 bits (30), Expect = 1e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 220 aggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccagg 279
|||||||||||||| ||||||||| ||| | ||||||||||||| || || || || |||
Sbjct: 19973262 aggttgatgcccagcacgttggccttgacggcggtgcagaggcagacggcggcgtcgagg 19973321
Query: 280 tccgccagcccctggatcagcgtgcagcac 309
|| || | |||||| | ||||| |||||||
Sbjct: 19973322 tcggcgatcccctgcagcagcgagcagcac 19973351
Score = 56.0 bits (28), Expect = 2e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 342 gatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
|||||||||||| |||| |||||||||||| | ||||||||| |||||
Sbjct: 9403230 gatcagcccgttgagcaggttggcgcacaccctcagcttcagggcgtc 9403277
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 20107909 cagcacgttcgcgcacacccccagcttcagcgcgtcc 20107873
Score = 50.1 bits (25), Expect = 0.001
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg---ccca 232
||||||||| ||||| || ||||||||| | || ||| | ||||||||||||| || |
Sbjct: 19966044 tgccgcagttgttgaggatgaggctgagatcgacggggatgttgaggttgatgatcccaa 19966103
Query: 233 ggacgttggccctgaggacggtgcagaggca 263
| ||||||||| ||| | |||||||||||||
Sbjct: 19966104 gaacgttggccttgatggcggtgcagaggca 19966134
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 349 ccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| |||| |||||||||||| | |||||||||||||||
Sbjct: 19961930 ccgttgagcacgttggcgcacacccgcagcttcagcgcgtc 19961970
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
||||||| | ||||| || || |||||||| || |||||||||||||||||||
Sbjct: 9403064 tgccgcacttgttgaggatgatgctgaggtcgacgggcaggttgaggttgatg 9403116
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||| |||||||||||||||
Sbjct: 19990137 cagcacgttggcgcacacgtgcagcttcagcgcgtc 19990172
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||| |||||||||||||||
Sbjct: 19983396 agcacgttggcgcacacgtgcagcttcagcgcgtc 19983430
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||||| || ||||| || ||||||||| ||| | |||||||||||||
Sbjct: 19977372 aggttgagtttcatgccgagcacgttggccttgacggcggtgcagaggca 19977421
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttca 382
||||||||| |||| |||||||||||| | ||||||||
Sbjct: 9379058 cagcccgtttagcacgttggcgcacactctcagcttca 9379095
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 20107768 gccgccgcctccgccgctgctgccgccgccacc 20107736
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 19973385 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 19973437
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 19970092 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 19970144
Score = 42.1 bits (21), Expect = 0.33
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggcaacg 401
|||||| || |||| |||||||||||| | |||||||| ||||||| ||||||||
Sbjct: 9394277 cagccccttgagcacgttggcgcacactctcagcttcaaagcgtccatcgggcaacg 9394333
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 21267515 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 21267456
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 21267455 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 21267396
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 21267395 agcccgttcagcagcgggcagcacggc 21267369
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| |||||||| ||||||||||| |
Sbjct: 21178171 tgccgcagttgttgaggatgaggctgaggtcgatggggaggttgagcttgatgcccagca 21178230
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21178231 cgttggccttgatggcggtgcagaggca 21178258
Score = 79.8 bits (40), Expect = 2e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| | ||||||||||| ||| || |
Sbjct: 21171457 tgccgcagttgttgaggatgaggctgaggtcgatggggatgttgaggttgaggccgagca 21171516
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21171517 cgttggccttgatggcggtgcagaggca 21171544
Score = 71.9 bits (36), Expect = 4e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| || ||| |||| ||| |||||||| || |
Sbjct: 21174903 tgccgcagttgttgaggatgaggctgaggtcgacggggaggtcgagcttgatgccgagca 21174962
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21174963 cgttggccttgacggcggtgcagaggca 21174990
Score = 63.9 bits (32), Expect = 9e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcc 273
|||||||||||||||||||| || |||||| ||| | ||||||||||||| || || ||
Sbjct: 21148356 aggttgaggttgatgcccagcacattggccttgacggcggtgcagaggcagacggcggcg 21148415
Query: 274 tccaggtccgccagcccctggatcagcgtgcagcac 309
|| ||||| || | |||||| | ||||| |||||||
Sbjct: 21148416 tcgaggtcggcgatcccctgcagcagcgagcagcac 21148451
Score = 60.0 bits (30), Expect = 1e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 220 aggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccagg 279
|||||||||||||| ||||||||| ||| | ||||||||||||| || || || || |||
Sbjct: 21151655 aggttgatgcccagcacgttggccttgacggcggtgcagaggcagacggcggcgtcgagg 21151714
Query: 280 tccgccagcccctggatcagcgtgcagcac 309
|| || | |||||| | ||||| |||||||
Sbjct: 21151715 tcggcgatcccctgcagcagcgagcagcac 21151744
Score = 56.0 bits (28), Expect = 2e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 342 gatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
|||||||||||| |||| |||||||||||| | ||||||||| |||||
Sbjct: 10072421 gatcagcccgttgagcaggttggcgcacaccctcagcttcagggcgtc 10072468
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 21267330 cagcacgttcgcgcacacccccagcttcagcgcgtcc 21267294
Score = 50.1 bits (25), Expect = 0.001
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg---ccca 232
||||||||| ||||| || ||||||||| | || ||| | ||||||||||||| || |
Sbjct: 21143569 tgccgcagttgttgaggatgaggctgagatcgacggggatgttgaggttgatgatcccaa 21143628
Query: 233 ggacgttggccctgaggacggtgcagaggca 263
| ||||||||| ||| | |||||||||||||
Sbjct: 21143629 gaacgttggccttgatggcggtgcagaggca 21143659
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 349 ccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| |||| |||||||||||| | |||||||||||||||
Sbjct: 21139372 ccgttgagcacgttggcgcacacccgcagcttcagcgcgtc 21139412
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
||||||| | ||||| || || |||||||| || |||||||||||||||||||
Sbjct: 10072255 tgccgcacttgttgaggatgatgctgaggtcgacgggcaggttgaggttgatg 10072307
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||| |||||||||||||||
Sbjct: 21178349 cagcacgttggcgcacacgtgcagcttcagcgcgtc 21178384
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||| |||||||||||||||
Sbjct: 21171636 agcacgttggcgcacacgtgcagcttcagcgcgtc 21171670
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||||| || ||||| || ||||||||| ||| | |||||||||||||
Sbjct: 21155764 aggttgagtttcatgccgagcacgttggccttgacggcggtgcagaggca 21155813
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttca 382
||||||||| |||| |||||||||||| | ||||||||
Sbjct: 10048251 cagcccgtttagcacgttggcgcacactctcagcttca 10048288
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 21267189 gccgccgcctccgccgctgctgccgccgccacc 21267157
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 21151778 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 21151830
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 21148485 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 21148537
Score = 42.1 bits (21), Expect = 0.33
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggcaacg 401
|||||| || |||| |||||||||||| | |||||||| ||||||| ||||||||
Sbjct: 10063468 cagccccttgagcacgttggcgcacactctcagcttcaaagcgtccatcgggcaacg 10063524
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 141 bits (71), Expect = 5e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 166 gggacgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttg 225
||||||| | |||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct: 21278779 gggacgcccttgccgcagaagttgaggatgaggctgaggtggatggggaggttgaggttg 21278720
Query: 226 atgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgcc 285
|||||||| ||||||||| ||| | | ||||| |||||||||||||||||||||||| ||
Sbjct: 21278719 atgcccagcacgttggccttgatggccgtgcacaggcacaccgccgcctccaggtccacc 21278660
Query: 286 agcccctggatcagcgtgcagcacggc 312
||||| | | ||||| ||||||||||
Sbjct: 21278659 agcccgttcagcagcgggcagcacggc 21278633
Score = 95.6 bits (48), Expect = 3e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| |||||||| ||||||||||| |
Sbjct: 21189435 tgccgcagttgttgaggatgaggctgaggtcgatggggaggttgagcttgatgcccagca 21189494
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21189495 cgttggccttgatggcggtgcagaggca 21189522
Score = 79.8 bits (40), Expect = 2e-012
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| |||||| | ||||||||||| ||| || |
Sbjct: 21182721 tgccgcagttgttgaggatgaggctgaggtcgatggggatgttgaggttgaggccgagca 21182780
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21182781 cgttggccttgatggcggtgcagaggca 21182808
Score = 71.9 bits (36), Expect = 4e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||| ||||| || ||||||||||| || ||| |||| ||| |||||||| || |
Sbjct: 21186167 tgccgcagttgttgaggatgaggctgaggtcgacggggaggtcgagcttgatgccgagca 21186226
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 21186227 cgttggccttgacggcggtgcagaggca 21186254
Score = 63.9 bits (32), Expect = 9e-008
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcc 273
|||||||||||||||||||| || |||||| ||| | ||||||||||||| || || ||
Sbjct: 21159620 aggttgaggttgatgcccagcacattggccttgacggcggtgcagaggcagacggcggcg 21159679
Query: 274 tccaggtccgccagcccctggatcagcgtgcagcac 309
|| ||||| || | |||||| | ||||| |||||||
Sbjct: 21159680 tcgaggtcggcgatcccctgcagcagcgagcagcac 21159715
Score = 60.0 bits (30), Expect = 1e-006
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 220 aggttgatgcccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccagg 279
|||||||||||||| ||||||||| ||| | ||||||||||||| || || || || |||
Sbjct: 21162919 aggttgatgcccagcacgttggccttgacggcggtgcagaggcagacggcggcgtcgagg 21162978
Query: 280 tccgccagcccctggatcagcgtgcagcac 309
|| || | |||||| | ||||| |||||||
Sbjct: 21162979 tcggcgatcccctgcagcagcgagcagcac 21163008
Score = 56.0 bits (28), Expect = 2e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 342 gatcagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
|||||||||||| |||| |||||||||||| | ||||||||| |||||
Sbjct: 10078460 gatcagcccgttgagcaggttggcgcacaccctcagcttcagggcgtc 10078507
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtcc 390
||||| ||| |||||||| ||||||||||||||||||
Sbjct: 21278594 cagcacgttcgcgcacacccccagcttcagcgcgtcc 21278558
Score = 50.1 bits (25), Expect = 0.001
Identities = 75/91 (82%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg---ccca 232
||||||||| ||||| || ||||||||| | || ||| | ||||||||||||| || |
Sbjct: 21154833 tgccgcagttgttgaggatgaggctgagatcgacggggatgttgaggttgatgatcccaa 21154892
Query: 233 ggacgttggccctgaggacggtgcagaggca 263
| ||||||||| ||| | |||||||||||||
Sbjct: 21154893 gaacgttggccttgatggcggtgcagaggca 21154923
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 349 ccgttcagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| |||| |||||||||||| | |||||||||||||||
Sbjct: 21150636 ccgttgagcacgttggcgcacacccgcagcttcagcgcgtc 21150676
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
||||||| | ||||| || || |||||||| || |||||||||||||||||||
Sbjct: 10078294 tgccgcacttgttgaggatgatgctgaggtcgacgggcaggttgaggttgatg 10078346
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||| |||||||||||||||
Sbjct: 21189613 cagcacgttggcgcacacgtgcagcttcagcgcgtc 21189648
Score = 46.1 bits (23), Expect = 0.021
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 355 agcaagttggcgcacacgcccagcttcagcgcgtc 389
|||| ||||||||||||| |||||||||||||||
Sbjct: 21182900 agcacgttggcgcacacgtgcagcttcagcgcgtc 21182934
Score = 44.1 bits (22), Expect = 0.084
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 214 aggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
|||||||| || ||||| || ||||||||| ||| | |||||||||||||
Sbjct: 21167028 aggttgagtttcatgccgagcacgttggccttgacggcggtgcagaggca 21167077
Score = 44.1 bits (22), Expect = 0.084
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttca 382
||||||||| |||| |||||||||||| | ||||||||
Sbjct: 10054290 cagcccgtttagcacgttggcgcacactctcagcttca 10054327
Score = 42.1 bits (21), Expect = 0.33
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 465 gccgccgcctccaccactgctgccgcccccacc 497
|||||||||||| || ||||||||||| |||||
Sbjct: 21278453 gccgccgcctccgccgctgctgccgccgccacc 21278421
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 21163042 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 21163094
Score = 42.1 bits (21), Expect = 0.33
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 346 agcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggca 398
||||| || |||| |||||||||||| | ||||||||| ||||| | ||||||
Sbjct: 21159749 agcccattgagcacgttggcgcacaccctcagcttcagggcgtcgatggggca 21159801
Score = 42.1 bits (21), Expect = 0.33
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 345 cagcccgttcagcaagttggcgcacacgcccagcttcagcgcgtccacggggcaacg 401
|||||| || |||| |||||||||||| | |||||||| ||||||| ||||||||
Sbjct: 10069507 cagccccttgagcacgttggcgcacactctcagcttcaaagcgtccatcgggcaacg 10069563
>gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 521
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 459 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 400
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 399 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 340
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 339 gcagcgggcagcacggc 323
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 284 cagcacgttggcgcacacgcccagcttcagcgcgtc 249
>gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 706
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 333 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 274
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 273 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 214
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 213 gcagcgggcagcacggc 197
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 158 cagcacgttggcgcacacgcccagcttcagcgcgtc 123
>gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 958
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 462 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 403
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 402 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 343
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 342 gcagcgggcagcacggc 326
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 287 cagcacgttggcgcacacgcccagcttcagcgcgtc 252
>gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-M22, mRNA sequence
Length = 488
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 473 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 414
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 413 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 354
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 353 gcagcgggcagcacggc 337
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 298 cagcacgttggcgcacacgcccagcttcagcgcgtc 263
>gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-P16, mRNA sequence
Length = 475
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 475 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 416
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 415 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 356
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 355 gcagcgggcagcacggc 339
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 300 cagcacgttggcgcacacgcccagcttcagcgcgtc 265
>gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, complete cds
Length = 715
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 397 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 338
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 337 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 278
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 277 gcagcgggcagcacggc 261
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 222 cagcacgttggcgcacacgcccagcttcagcgcgtc 187
>dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F07, full
insert sequence
Length = 833
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 472 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 413
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 412 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 353
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 352 gcagcgggcagcacggc 336
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 297 cagcacgttggcgcacacgcccagcttcagcgcgtc 262
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0516F12
Length = 146364
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 90005 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 89946
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 89945 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 89886
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 89885 gcagcgggcagcacggc 89869
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 99620 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 99561
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 99560 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 99515
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 89830 cagcacgttggcgcacacgcccagcttcagcgcgtc 89795
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1001_D02
Length = 129081
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 2495 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 2436
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 2435 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 2376
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 2375 gcagcgggcagcacggc 2359
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 12110 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 12051
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 12050 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 12005
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 2320 cagcacgttggcgcacacgcccagcttcagcgcgtc 2285
>gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005096, whole
genome shotgun sequence
Length = 37135
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 12135 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 12076
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 12075 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 12016
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 12015 gcagcgggcagcacggc 11999
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 21695 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 21636
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 21635 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 21590
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 11960 cagcacgttggcgcacacgcccagcttcagcgcgtc 11925
>ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 833
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 472 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 413
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 412 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 353
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 352 gcagcgggcagcacggc 336
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 297 cagcacgttggcgcacacgcccagcttcagcgcgtc 262
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 1988951 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 1988892
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 1988891 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 1988832
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 1988831 gcagcgggcagcacggc 1988815
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 1998566 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 1998507
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 1998506 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 1998461
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 1988776 cagcacgttggcgcacacgcccagcttcagcgcgtc 1988741
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 13266541 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 13266482
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 13266481 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 13266422
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 13266421 gcagcgggcagcacggc 13266405
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 13276101 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 13276042
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 13276041 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 13275996
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 13266366 cagcacgttggcgcacacgcccagcttcagcgcgtc 13266331
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 26719605 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 26719546
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 26719545 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 26719486
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 26719485 gcagcgggcagcacggc 26719469
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 26729165 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 26729106
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 26729105 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 26729060
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 26719430 cagcacgttggcgcacacgcccagcttcagcgcgtc 26719395
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 121 bits (61), Expect = 4e-025
Identities = 118/137 (86%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||||||||||| || ||||||||||| |||||| |||||||||||||| || ||||
Sbjct: 26823952 tgccgcagtagttgaggatgaggctgaggtcgatggggaggttgaggttgattccgagga 26823893
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagcccctgga 295
|||| |||||| | | ||||||||||||||||||||||| ||||| | ||||||| |
Sbjct: 26823892 tgttgcccctgatggccgtgcagaggcacaccgccgcctcgaggtcgacgagcccctcca 26823833
Query: 296 tcagcgtgcagcacggc 312
||||| ||||||||||
Sbjct: 26823832 gcagcgggcagcacggc 26823816
Score = 83.8 bits (42), Expect = 1e-013
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
|||||||||||||||||||||||||||| |||| ||| | || |||| ||||||| || |
Sbjct: 26833567 tgccgcagtagttgacgaggaggctgagcttgacggggatgtcgagggtgatgccgagca 26833508
Query: 236 cgttggccctgaggacggtgcagaggcacaccgccgcctccaggtc 281
|||||||| ||| | |||||||||| || || || ||||| |||||
Sbjct: 26833507 cgttggccttgatggcggtgcagagacagacggcggcctcaaggtc 26833462
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 26823777 cagcacgttggcgcacacgcccagcttcagcgcgtc 26823742
>gb|AY466109.1| Oryza sativa (japonica cultivar-group) lipid transfer protein-like
protein (LTP2) mRNA, complete cds
Length = 758
Score = 111 bits (56), Expect = 4e-022
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 446 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 387
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagc 288
|| |||| |||| | |||| | | ||||||||||| ||||||||||| ||||| | |||
Sbjct: 386 ccgaggatgttgcctctgatggccgtgcagaggcataccgccgcctcgaggtcgacgagc 327
Query: 289 ccctggatcagcgtgcagcacggc 312
|||| | ||||| ||||||||||
Sbjct: 326 ccctccagcagcgggcagcacggc 303
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 264 cagcacgttggcgcacacgcccagcttcagcgcgtc 229
>ref|XM_473448.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 393
Score = 111 bits (56), Expect = 4e-022
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 371 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 312
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagc 288
|| |||| |||| | |||| | | ||||||||||| ||||||||||| ||||| | |||
Sbjct: 311 ccgaggatgttgcctctgatggccgtgcagaggcataccgccgcctcgaggtcgacgagc 252
Query: 289 ccctggatcagcgtgcagcacggc 312
|||| | ||||| ||||||||||
Sbjct: 251 ccctccagcagcgggcagcacggc 228
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 189 cagcacgttggcgcacacgcccagcttcagcgcgtc 154
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 111 bits (56), Expect = 4e-022
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 1490439 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 1490380
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagc 288
|| |||| |||| | |||| | | ||||||||||| ||||||||||| ||||| | |||
Sbjct: 1490379 ccgaggatgttgcctctgatggccgtgcagaggcataccgccgcctcgaggtcgacgagc 1490320
Query: 289 ccctggatcagcgtgcagcacggc 312
|||| | ||||| ||||||||||
Sbjct: 1490319 ccctccagcagcgggcagcacggc 1490296
Score = 109 bits (55), Expect = 2e-021
Identities = 139/167 (83%)
Strand = Plus / Minus
Query: 146 agaagcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggt 205
||||||||| |||||| | || |||||| ||||||||||||||| || |||||||||||
Sbjct: 1493662 agaagcacttgaagccggtgggcacgcgcttgccgcagtagttgaggatgaggctgaggt 1493603
Query: 206 tgatgggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcaca 265
|| ||| ||||| ||||||||||| || | |||| || ||| | | |||||||||||||
Sbjct: 1493602 cgacggggaggttaaggttgatgccgagaatgttgcccttgatggccgtgcagaggcaca 1493543
Query: 266 ccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||| ||||| | ||||||| | ||||| ||||||||||
Sbjct: 1493542 ccgccgcctcgaggtcgacgagcccctccagcagcgggcagcacggc 1493496
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 1493457 cagcacgttggcgcacacgcccagcttcagcgcgtc 1493422
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 1490257 cagcacgttggcgcacacgcccagcttcagcgcgtc 1490222
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 111 bits (56), Expect = 4e-022
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 144418 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 144359
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagc 288
|| |||| |||| | |||| | | ||||||||||| ||||||||||| ||||| | |||
Sbjct: 144358 ccgaggatgttgcctctgatggccgtgcagaggcataccgccgcctcgaggtcgacgagc 144299
Query: 289 ccctggatcagcgtgcagcacggc 312
|||| | ||||| ||||||||||
Sbjct: 144298 ccctccagcagcgggcagcacggc 144275
Score = 109 bits (55), Expect = 2e-021
Identities = 139/167 (83%)
Strand = Plus / Minus
Query: 146 agaagcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggt 205
||||||||| |||||| | || |||||| ||||||||||||||| || |||||||||||
Sbjct: 147641 agaagcacttgaagccggtgggcacgcgcttgccgcagtagttgaggatgaggctgaggt 147582
Query: 206 tgatgggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcaca 265
|| ||| ||||| ||||||||||| || | |||| || ||| | | |||||||||||||
Sbjct: 147581 cgacggggaggttaaggttgatgccgagaatgttgcccttgatggccgtgcagaggcaca 147522
Query: 266 ccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||| ||||| | ||||||| | ||||| ||||||||||
Sbjct: 147521 ccgccgcctcgaggtcgacgagcccctccagcagcgggcagcacggc 147475
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 147436 cagcacgttggcgcacacgcccagcttcagcgcgtc 147401
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 144236 cagcacgttggcgcacacgcccagcttcagcgcgtc 144201
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 111 bits (56), Expect = 4e-022
Identities = 122/144 (84%)
Strand = Plus / Minus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 27713792 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 27713733
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacaccgccgcctccaggtccgccagc 288
|| |||| |||| | |||| | | ||||||||||| ||||||||||| ||||| | |||
Sbjct: 27713732 ccgaggatgttgcctctgatggccgtgcagaggcataccgccgcctcgaggtcgacgagc 27713673
Query: 289 ccctggatcagcgtgcagcacggc 312
|||| | ||||| ||||||||||
Sbjct: 27713672 ccctccagcagcgggcagcacggc 27713649
Score = 109 bits (55), Expect = 2e-021
Identities = 139/167 (83%)
Strand = Plus / Minus
Query: 146 agaagcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggt 205
||||||||| |||||| | || |||||| ||||||||||||||| || |||||||||||
Sbjct: 27717015 agaagcacttgaagccggtgggcacgcgcttgccgcagtagttgaggatgaggctgaggt 27716956
Query: 206 tgatgggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcaca 265
|| ||| ||||| ||||||||||| || | |||| || ||| | | |||||||||||||
Sbjct: 27716955 cgacggggaggttaaggttgatgccgagaatgttgcccttgatggccgtgcagaggcaca 27716896
Query: 266 ccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||| ||||| | ||||||| | ||||| ||||||||||
Sbjct: 27716895 ccgccgcctcgaggtcgacgagcccctccagcagcgggcagcacggc 27716849
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 27716810 cagcacgttggcgcacacgcccagcttcagcgcgtc 27716775
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 27713610 cagcacgttggcgcacacgcccagcttcagcgcgtc 27713575
>gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010254, whole
genome shotgun sequence
Length = 23371
Score = 109 bits (55), Expect = 2e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 146 agaagcactggaagcccgatgggacgcgcctgccgcagtagttgacgaggaggctgaggt 205
||||||||| |||||| | || |||||| ||||||||||||||| || |||||||||||
Sbjct: 4103 agaagcacttgaagccggtgggcacgcgcttgccgcagtagttgaggatgaggctgaggt 4162
Query: 206 tgatgggcaggttgaggttgatgcccaggacgttggccctgaggacggtgcagaggcaca 265
|| ||| ||||| ||||||||||| || | |||| || ||| | | |||||||||||||
Sbjct: 4163 cgacggggaggttaaggttgatgccgagaatgttgcccttgatggccgtgcagaggcaca 4222
Query: 266 ccgccgcctccaggtccgccagcccctggatcagcgtgcagcacggc 312
|||||||||| ||||| | ||||||| | ||||| ||||||||||
Sbjct: 4223 ccgccgcctcgaggtcgacgagcccctccagcagcgggcagcacggc 4269
Score = 97.6 bits (49), Expect = 6e-018
Identities = 122/145 (84%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 169 acgcgcctgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatg 228
|||||| ||||||||||||||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 7326 acgcgcttgccgcagtagttgaggatgaggctgaggtcgacggggaggttgaggttgatg 7385
Query: 229 cccaggacgttggccctgaggacggtgcagaggcacacc-gccgcctccaggtccgccag 287
|| |||| |||| | |||| | | ||||||||||| ||| |||||||| ||||| | ||
Sbjct: 7386 ccgaggatgttgcctctgatggccgtgcagaggcataccggccgcctcgaggtcgacgag 7445
Query: 288 cccctggatcagcgtgcagcacggc 312
||||| | ||||| ||||||||||
Sbjct: 7446 cccctccagcagcgggcagcacggc 7470
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 7509 cagcacgttggcgcacacgcccagcttcagcgcgtc 7544
Score = 63.9 bits (32), Expect = 9e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 354 cagcaagttggcgcacacgcccagcttcagcgcgtc 389
||||| ||||||||||||||||||||||||||||||
Sbjct: 4308 cagcacgttggcgcacacgcccagcttcagcgcgtc 4343
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 821,361
Number of Sequences: 438736
Number of extensions: 821361
Number of successful extensions: 22867
Number of sequences better than 0.5: 236
Number of HSP's better than 0.5 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19865
Number of HSP's gapped (non-prelim): 2976
length of query: 591
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 570
effective length of database: 2,791,206,460
effective search space: 1590987682200
effective search space used: 1590987682200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)