BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading y... 176 1e-041
gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (j... 174 6e-041
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 174 6e-041
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 174 6e-041
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 174 6e-041
gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) c... 174 6e-041
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 174 6e-041
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 174 6e-041
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 174 6e-041
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 174 6e-041
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 174 6e-041
gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (j... 168 4e-039
gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading y... 168 4e-039
gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root O... 161 9e-037
gb|AU082336.1|AU082336 AU082336 Rice immature leaf includin... 161 9e-037
gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3... 151 9e-034
gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (ja... 151 9e-034
gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 1... 151 9e-034
gb|AU070140.1|AU070140 AU070140 Rice cDNA from immature lea... 141 8e-031
gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 1... 141 8e-031
gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda pha... 137 1e-029
gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3... 121 8e-025
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 121 8e-025
gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) c... 121 8e-025
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 121 8e-025
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 121 8e-025
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 121 8e-025
gb|CA999379.1|CA999379 S234G_H12 Rice cold stress germinati... 109 3e-021
gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (jap... 103 2e-019
gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (jap... 103 2e-019
gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cD... 103 2e-019
gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, c... 103 2e-019
dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
dbj|AP004883.3| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
dbj|AP004037.3| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA 103 2e-019
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 103 2e-019
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda pha... 98 1e-017
gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda pha... 98 1e-017
gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
ref|XM_473449.1| Oryza sativa (japonica cultivar-group), p... 94 2e-016
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 94 2e-016
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 94 2e-016
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|AY466109.1| Oryza sativa (japonica cultivar-group) lipid... 90 3e-015
ref|XM_473448.1| Oryza sativa (japonica cultivar-group), p... 90 3e-015
gb|AU082161.1|AU082161 AU082161 Rice root Oryza sativa (jap... 86 4e-014
dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA... 86 4e-014
gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15... 86 4e-014
gb|AACV01022076.1| Oryza sativa (japonica cultivar-group) c... 86 4e-014
ref|NM_197681.1| Oryza sativa (japonica cultivar-group) put... 86 4e-014
gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root O... 84 2e-013
dbj|AK063684.1| Oryza sativa (japonica cultivar-group) cDNA... 84 2e-013
gb|AU184680.1|AU184680 AU184680 Rice root Oryza sativa (jap... 80 3e-012
gb|AU184738.1|AU184738 AU184738 Rice root Oryza sativa (jap... 80 3e-012
gb|AU184008.1|AU184008 AU184008 Rice root Oryza sativa (jap... 78 1e-011
gb|AU184329.1|AU184329 AU184329 Rice root Oryza sativa (jap... 78 1e-011
gb|AU029427.1|AU029427 AU029427 Rice panicle shorter than 3... 74 2e-010
gb|AU032568.1|AU032568 AU032568 Rice green shoot Oryza sati... 74 2e-010
gb|AU076227.1|AU076227 AU076227 Rice cDNA from young root O... 74 2e-010
gb|CB679219.1|CB679219 OSJNEf02G23.r OSJNEf Oryza sativa (j... 74 2e-010
gb|CB679517.1|CB679517 OSJNEf03B23.f OSJNEf Oryza sativa (j... 74 2e-010
dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-010
gb|AU069961.1|AU069961 AU069961 Rice panicle shorter than 3... 72 6e-010
gb|AU081583.1|AU081583 AU081583 Rice cDNA from young root O... 70 2e-009
gb|AU082158.1|AU082158 AU082158 Rice root Oryza sativa (jap... 70 2e-009
gb|AU184007.1|AU184007 AU184007 Rice root Oryza sativa (jap... 70 2e-009
gb|CA756160.1|CA756160 BR030036000_PLATE_D01_4_012.ab1 OA O... 70 2e-009
gb|CB685490.1|CB685490 OSJNEf15O17.f OSJNEf Oryza sativa (j... 70 2e-009
gb|CF325935.1|CF325935 JMT1--04-K07.g1 AtJMT-overexpressing... 70 2e-009
gb|CV727621.1|CV727621 14Salt--05-N17.b1 Salt treated rice ... 70 2e-009
dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
gb|AACV01022075.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|NM_197679.1| Oryza sativa (japonica cultivar-group) put... 70 2e-009
gb|AU161822.1|AU161822 AU161822 Rice shoot Oryza sativa (ja... 68 1e-008
gb|AU174369.1|AU174369 AU174369 Rice shoot Oryza sativa (ja... 68 1e-008
gb|CX728264.1|CX728264 OSJNEf03B23.r OSJNEf Oryza sativa (j... 68 1e-008
gb|AU032244.1|AU032244 AU032244 Rice root Oryza sativa (jap... 64 2e-007
gb|BE039206.1|BE039206 OA01C08 OA Oryza sativa (japonica cu... 64 2e-007
gb|AU184269.1|AU184269 AU184269 Rice root Oryza sativa (jap... 64 2e-007
gb|CV722738.1|CV722738 root--01-G20.g1 Rice root lambda pha... 64 2e-007
gb|CV723709.1|CV723709 root--04-I08.g1 Rice root lambda pha... 64 2e-007
gb|CV724280.1|CV724280 root--06-H08.g1 Rice root lambda pha... 64 2e-007
gb|AQ796380.1|AQ796380 nbxb0063M17f CUGI Rice BAC Library O... 62 6e-007
gb|CV724500.1|CV724500 14Salt--01-B21.b1 Salt treated rice ... 62 6e-007
gb|CV725574.1|CV725574 14Salt--02-L17.g1 Salt treated rice ... 62 6e-007
gb|CV727251.1|CV727251 14Salt--05-E24.g1 Salt treated rice ... 62 6e-007
gb|CV727305.1|CV727305 14Salt--05-G05.b1 Salt treated rice ... 62 6e-007
gb|CV727622.1|CV727622 14Salt--05-N17.g1 Salt treated rice ... 62 6e-007
gb|CV728268.1|CV728268 14Salt--06-O07.b1 Salt treated rice ... 62 6e-007
dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
dbj|AK063037.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
dbj|AK063090.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
gb|AACV01012630.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
ref|NM_197680.1| Oryza sativa (japonica cultivar-group) put... 62 6e-007
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 62 6e-007
gb|AU083470.2|AU083470 AU083470 Rice panicle at ripening st... 60 2e-006
gb|AU173085.1|AU173085 AU173085 Rice root Oryza sativa (jap... 60 2e-006
gb|CB643292.1|CB643292 OSJNEb03O11.r OSJNEb Oryza sativa (j... 60 2e-006
gb|CB665247.1|CB665247 OSJNEd11H24.r OSJNEd Oryza sativa (j... 60 2e-006
emb|AL606596.1|OSJN00028 Oryza sativa (japonica cultivar-gr... 60 2e-006
dbj|AK061229.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AK069600.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AP006062.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01000441.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
gb|AACV01009079.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
gb|AACV01019088.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
ref|XM_450098.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 60 2e-006
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 60 2e-006
ref|NM_188432.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 60 2e-006
dbj|AP001633.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AP003104.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401232.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
emb|AL663014.3|OSJN00212 Oryza sativa genomic DNA, chromoso... 60 2e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AU032570.1|AU032570 AU032570 Rice green shoot Oryza sati... 58 9e-006
gb|AU081582.1|AU081582 AU081582 Rice cDNA from young root O... 58 9e-006
gb|AU173792.1|AU173792 AU173792 Rice root Oryza sativa (jap... 56 4e-005
gb|CV725022.1|CV725022 14Salt--01-O08.b1 Salt treated rice ... 56 4e-005
gb|CV725023.1|CV725023 14Salt--01-O08.g1 Salt treated rice ... 56 4e-005
dbj|AK062848.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AC123594.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|AACV01021306.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NM_195931.1| Oryza sativa (japonica cultivar-group) put... 56 4e-005
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 56 4e-005
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CA755383.1|CA755383 BR030019000_PLATE_E10_77_082.ab1 OA ... 54 1e-004
gb|CF290928.1|CF290928 14ROOT--01-C13.g1 Rice root plasmid ... 54 1e-004
gb|CF291056.1|CF291056 14ROOT--01-F09.b1 Rice root plasmid ... 54 1e-004
gb|CF291057.1|CF291057 14ROOT--01-F09.g1 Rice root plasmid ... 54 1e-004
gb|CV722920.1|CV722920 root--01-P12.g1 Rice root lambda pha... 54 1e-004
gb|CV724579.1|CV724579 14Salt--01-D21.b1 Salt treated rice ... 54 1e-004
gb|CV725664.1|CV725664 14Salt--02-N21.b1 Salt treated rice ... 54 1e-004
gb|CV725882.1|CV725882 14Salt--03-D14.g1 Salt treated rice ... 54 1e-004
gb|CV727250.1|CV727250 14Salt--05-E24.b1 Salt treated rice ... 54 1e-004
gb|CV728302.1|CV728302 14Salt--06-P02.b1 Salt treated rice ... 54 1e-004
gb|CV728303.1|CV728303 14Salt--06-P02.g1 Salt treated rice ... 54 1e-004
dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid... 54 1e-004
dbj|AP004557.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP004884.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005820.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01004314.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|AACV01018756.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|XM_465666.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 54 1e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AU082154.1|AU082154 AU082154 Rice root Oryza sativa (jap... 52 6e-004
gb|AU101404.1|AU101404 AU101404 Rice panicle shorter than 3... 52 6e-004
dbj|AK110254.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
gb|AU075821.1|AU075821 AU075821 Rice root Oryza sativa (jap... 50 0.002
gb|AU075822.1|AU075822 AU075822 Rice root Oryza sativa (jap... 50 0.002
gb|AU082152.1|AU082152 AU082152 Rice root Oryza sativa (jap... 50 0.002
gb|AU082153.1|AU082153 AU082153 Rice root Oryza sativa (jap... 50 0.002
gb|AU082159.1|AU082159 AU082159 Rice root Oryza sativa (jap... 50 0.002
gb|AU097490.1|AU097490 AU097490 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU197620.1|AU197620 AU197620 Rice root Oryza sativa (jap... 50 0.002
gb|CA755754.1|CA755754 BR030027000_PLATE_F11_86_094.ab1 OA ... 50 0.002
gb|CA758859.1|CA758859 BR030041000_PLATE_B05_34_043.ab1 OA ... 50 0.002
gb|L27209.1|RICRCC2 Oryza sativa root-specific RCc2 mRNA, c... 50 0.002
gb|L27210.1|RICRCG2 Oryza sativa root-specific protein (RCg... 50 0.002
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP004117.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01003734.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01022072.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01022074.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_197671.1| Oryza sativa (japonica cultivar-group) put... 50 0.002
ref|NM_197674.1| Oryza sativa (japonica cultivar-group) put... 50 0.002
ref|XM_464792.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AU161559.1|AU161559 AU161559 Rice shoot Oryza sativa (ja... 48 0.009
gb|CB000875.1|CB000875 S345K_D02 Rice cold stress germinati... 48 0.009
gb|CB000988.1|CB000988 S234F_A10 Rice cold stress germinati... 48 0.009
gb|AQ287619.1|AQ287619 nbxb0016C05f CUGI Rice BAC Library O... 46 0.036
gb|D40727.1|D40727 RICS2860A Rice shoot Oryza sativa (japon... 46 0.036
gb|AU082157.1|AU082157 AU082157 Rice root Oryza sativa (jap... 46 0.036
gb|C20136.2|C20136 C20136 Rice panicle at ripening stage Or... 46 0.036
gb|AU184038.1|AU184038 AU184038 Rice root Oryza sativa (jap... 46 0.036
gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 ... 46 0.036
gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 ... 46 0.036
emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC O... 46 0.036
ref|NT_107100.1| Oryza sativa chromosome 11 BAC clone OSJNB... 46 0.036
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 46 0.036
gb|AACV01008103.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
gb|AACV01008126.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
gb|AACV01022942.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
gb|AACV01024059.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
ref|NM_185028.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.036
ref|NM_197675.1| Oryza sativa (japonica cultivar-group) put... 46 0.036
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.036
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 46 0.036
dbj|AP003560.2| Oryza sativa (japonica cultivar-group) geno... 46 0.036
dbj|AP003309.3| Oryza sativa (japonica cultivar-group) geno... 46 0.036
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.036
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.036
gb|AC137922.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|AC135558.6| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
dbj|AK069688.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK100873.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
gb|AC123518.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
ref|NT_107143.1| Oryza sativa (japonica cultivar-group) 44 0.14
gb|AC150775.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|AC136969.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|AACV01022263.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01022551.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NM_195926.1| Oryza sativa (japonica cultivar-group) put... 44 0.14
gb|CH401258.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|AC145321.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
>gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-C10, mRNA sequence
Length = 459
Score = 176 bits (89), Expect = 1e-041
Identities = 203/241 (84%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccct 162
|||| ||||||||||||| |||||||| ||| ||||||| |||||||| |||| | ||
Sbjct: 33 ggacacgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagct 92
Query: 163 ggggacgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggc 222
|||||||||||| || |||||| |||| || |||||||| || || ||||| ||||
Sbjct: 93 ggggacgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggc 152
Query: 223 ggcggtgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcc 282
|| ||| |||||||||||| |||| | |||||| ||| ||||||||||||||||| ||
Sbjct: 153 cgccgtgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccc 212
Query: 283 catcaacctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtg 342
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct: 213 catcaacctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtg 272
Query: 343 c 343
|
Sbjct: 273 c 273
>gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 5', mRNA sequence
Length = 643
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 37 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 96
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 97 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 156
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 157 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 216
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 217 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 272
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Minus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 63932 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 63873
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 63872 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 63813
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 63812 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 63753
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 63752 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 63697
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 72952 gacgcgctgaagctgggcgtgtgcgccaacgtgct 72918
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 72828 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 72769
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 72768 tcgtcctcctcctcaactactgc 72746
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 75656 gacgcgctgaagctgagcgtgtgcgccaacgtgct 75622
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 35791 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 35850
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 35851 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 35910
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 35911 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 35970
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 35971 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 36026
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 26893 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 26952
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 26953 tcgtcctcctcctcaactactgc 26975
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 26769 gacgcgctgaagctgggcgtgtgcgccaacgtgct 26803
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 24065 gacgcgctgaagctgagcgtgtgcgccaacgtgct 24099
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 132724 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 132783
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 132784 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 132843
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 132844 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 132903
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 132904 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 132959
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 123826 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 123885
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 123886 tcgtcctcctcctcaactactgc 123908
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 123702 gacgcgctgaagctgggcgtgtgcgccaacgtgct 123736
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 120998 gacgcgctgaagctgagcgtgtgcgccaacgtgct 121032
>gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005727, whole
genome shotgun sequence
Length = 11983
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Minus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 11467 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 11408
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 11407 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 11348
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 11347 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 11288
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 11287 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 11232
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 198724 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 198783
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 198784 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 198843
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 198844 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 198903
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 198904 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 198959
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 189826 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 189885
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 189886 tcgtcctcctcctcaactactgc 189908
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 189702 gacgcgctgaagctgggcgtgtgcgccaacgtgct 189736
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 186998 gacgcgctgaagctgagcgtgtgcgccaacgtgct 187032
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 205130 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 205189
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 205190 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 205249
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 205250 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 205309
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 205310 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 205365
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 397492 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 397551
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 397552 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 397611
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 397612 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 397671
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 397672 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 397727
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| | |||||||||||| ||||
Sbjct: 34345818 gacgcgctgaagctgcgtgtgtgcgccaacgtgct 34345852
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| | |||||||||||| ||||
Sbjct: 34097650 gacgcgctgaagctgcgtgtgtgcgccaacgtgct 34097616
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 198724 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 198783
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 198784 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 198843
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 198844 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 198903
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 198904 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 198959
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 189826 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 189885
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 189886 tcgtcctcctcctcaactactgc 189908
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 189702 gacgcgctgaagctgggcgtgtgcgccaacgtgct 189736
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 186998 gacgcgctgaagctgagcgtgtgcgccaacgtgct 187032
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| | |||||||||||| ||||
Sbjct: 33204716 gacgcgctgaagctgcgtgtgtgcgccaacgtgct 33204682
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 174 bits (88), Expect = 6e-041
Identities = 199/236 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 198724 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 198783
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 198784 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 198843
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 198844 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 198903
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 198904 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 198959
Score = 61.9 bits (31), Expect = 6e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||| ||||||||| ||||| | ||| || |||
Sbjct: 189826 gcctctgcaccgccatcaaggccaacgtcctcggcatcaacatcaacgtccccgtcgacc 189885
Query: 291 tcagcctcctcgtcaactactgc 313
|| ||||||| |||||||||||
Sbjct: 189886 tcgtcctcctcctcaactactgc 189908
Score = 61.9 bits (31), Expect = 6e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
|||||||||||||||||||||||||||||| ||||
Sbjct: 189702 gacgcgctgaagctgggcgtgtgcgccaacgtgct 189736
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| |||||||||||||| ||||
Sbjct: 186998 gacgcgctgaagctgagcgtgtgcgccaacgtgct 187032
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| | |||||||||||| ||||
Sbjct: 33114206 gacgcgctgaagctgcgtgtgtgcgccaacgtgct 33114172
>gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 3', mRNA sequence
Length = 806
Score = 168 bits (85), Expect = 4e-039
Identities = 198/236 (83%)
Strand = Plus / Minus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 605 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 546
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 545 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 486
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||| ||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 485 tgtgcctntgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 426
Query: 288 acctcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 425 acctcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 370
>gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-C09, mRNA sequence
Length = 453
Score = 168 bits (85), Expect = 4e-039
Identities = 196/233 (84%)
Strand = Plus / Plus
Query: 111 tgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctggggacgc 170
|||||||||| |||||||| ||| ||||||| |||||||| |||| | ||||||||||
Sbjct: 10 tgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctggggacgc 69
Query: 171 cgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgg 230
|||| || |||||| |||| || |||||||| || || ||||| |||| || |||
Sbjct: 70 cgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccgtgt 129
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| |||| | |||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 130 gcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatcaacc 189
Query: 291 tcagcctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
|||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 190 tcagcctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 242
>gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 413
Score = 161 bits (81), Expect = 9e-037
Identities = 177/209 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 204 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 263
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 264 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 323
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 324 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 383
Query: 288 acctcagcctcctcgtcaactactgcggc 316
|||||||||||||||||||||||||||||
Sbjct: 384 acctcagcctcctcgtcaactactgcggc 412
>gb|AU082336.1|AU082336 AU082336 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50579, mRNA sequence
Length = 517
Score = 161 bits (81), Expect = 9e-037
Identities = 177/209 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 308 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 367
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 368 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 427
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 428 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 487
Query: 288 acctcagcctcctcgtcaactactgcggc 316
|||||||||||||||||||||||||||||
Sbjct: 488 acctcagcctcctcgtcaactactgcggc 516
>gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30638, mRNA sequence
Length = 472
Score = 151 bits (76), Expect = 9e-034
Identities = 172/204 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 269 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 328
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 329 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 388
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 389 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 448
Query: 288 acctcagcctcctcgtcaactact 311
||||||||||||||||||||||||
Sbjct: 449 acctcagcctcctcgtcaactact 472
>gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5454, mRNA sequence
Length = 367
Score = 151 bits (76), Expect = 9e-034
Identities = 172/204 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 164 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 223
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 224 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 283
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 284 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 343
Query: 288 acctcagcctcctcgtcaactact 311
||||||||||||||||||||||||
Sbjct: 344 acctcagcctcctcgtcaactact 367
>gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20775, mRNA sequence
Length = 587
Score = 151 bits (76), Expect = 9e-034
Identities = 172/204 (84%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 384 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 443
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 444 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 503
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 504 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 563
Query: 288 acctcagcctcctcgtcaactact 311
||||||||||||||||||||||||
Sbjct: 564 acctcagcctcctcgtcaactact 587
>gb|AU070140.1|AU070140 AU070140 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50146_2A, mRNA sequence
Length = 200
Score = 141 bits (71), Expect = 8e-031
Identities = 164/195 (84%)
Strand = Plus / Minus
Query: 122 gtgtgcgccaacttgctgaacgggctgatcaacgcgaccctggggacgccgcccaggacg 181
|||||||| ||| ||||||| |||||||| |||| | |||||||||||||| || |
Sbjct: 196 gtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctggggacgccgccgcggcag 137
Query: 182 ccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcacc 241
||||| |||| || |||||||| || || ||||| |||| || ||| |||||||||||
Sbjct: 136 ccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccgtgtgcctctgcacc 77
Query: 242 gtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcctc 301
| |||| | |||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 76 gccctccgcgccaacatccttggcatcaacctcaacctccccatcaacctcagcctcctc 17
Query: 302 gtcaactactgcggc 316
|||||||||||||||
Sbjct: 16 gtcaactactgcggc 2
>gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20248, mRNA sequence
Length = 327
Score = 141 bits (71), Expect = 8e-031
Identities = 167/199 (83%)
Strand = Plus / Plus
Query: 108 cgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctgggga 167
||||||||||||| |||||||| ||| ||||||| |||||||| |||| | |||||||
Sbjct: 129 cgctgaagctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctgggga 188
Query: 168 cgccgcccaggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcgg 227
||||||| || |||||| |||| || |||||||| || || ||||| |||| || |
Sbjct: 189 cgccgccgcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccg 248
Query: 228 tgggcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatca 287
|| |||||||||||| |||| | |||||| ||| ||||||||||||||||| |||||||
Sbjct: 249 tgtgcctctgcaccgccctccgcgccaacatccttggcatcaacctcaacctccccatca 308
Query: 288 acctcagcctcctcgtcaa 306
|||||||||||||||||||
Sbjct: 309 acctcagcctcctcgtcaa 327
>gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-D03, mRNA sequence
Length = 484
Score = 137 bits (69), Expect = 1e-029
Identities = 189/229 (82%)
Strand = Plus / Minus
Query: 115 gctgggcgtgtgcgccaacttgctgaacgggctgatcaacgcgaccctggggacgccgcc 174
|||||| |||||||| ||| ||||||| |||||||| |||| | ||||||||||||||
Sbjct: 458 gctgggggtgtgcgcgaacgtgctgaatgggctgataaacgtgcagctggggacgccgcc 399
Query: 175 caggacgccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcct 234
|| |||||| |||| || |||||||| || || ||||| |||| || ||| ||||
Sbjct: 398 gcggcagccgtgttgcagcctcatccagggcctcgccgaccttgaggccgccgtgtgcct 339
Query: 235 ctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcag 294
|||||||| |||| | |||||| ||| |||||||||||||| | ||| ||||||||||
Sbjct: 338 ctgcaccgccctccgcgccaacatccttggcatcaacctcaaacctcccctcaacctcag 279
Query: 295 cctcctcgtcaactactgcggcaggcgcgtcccctcgggcttccagtgc 343
|||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 278 cctcctcgtcaactactgcggccgctccgtcccctccggcttccagtgc 230
>gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30571, mRNA sequence
Length = 711
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 205 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 264
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 265 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 324
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 325 cctcaacttctgcggcaagggcgtccccaccggcttc 361
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 130 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 166
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Minus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 66990 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 66931
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 66930 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 66871
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 66870 cctcaacttctgcggcaagggcgtccccaccggcttc 66834
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 67065 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 67029
>gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022087, whole
genome shotgun sequence
Length = 9818
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 6474 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 6533
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 6534 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 6593
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 6594 cctcaacttctgcggcaagggcgtccccaccggcttc 6630
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 6399 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 6435
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 3189563 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 3189622
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 3189623 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 3189682
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 3189683 cctcaacttctgcggcaagggcgtccccaccggcttc 3189719
Score = 85.7 bits (43), Expect = 4e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||| |||
Sbjct: 3100451 gcctctgcaccgccatcaaggccaacgtgctgggcatcaagctcaacctccccatcgacc 3100392
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 3100391 tcagcctcatcctcaacaactgcggca 3100365
Score = 69.9 bits (35), Expect = 2e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || ||| ||||||||||| | |||||| |||
Sbjct: 3093737 gcctctgcaccgccatcaaggccaacgtgctcggcctcaacctcaacatccccatcgacc 3093678
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 3093677 tcagcctcatcctcaacaactgcggca 3093651
Score = 61.9 bits (31), Expect = 6e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || |||||||| ||| |||| ||| || |||
Sbjct: 3097183 gcctctgcaccgccgtcaaggccaacgtgctcggcatcaagctcgacctccccgtcgacc 3097124
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 3097123 tcagcctcatcctcaacaactgcggca 3097097
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 3189488 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 3189524
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacct 279
|||||||||||| | ||| |||||| | ||||||||||||||||||||
Sbjct: 3070598 gcctctgcaccgccgtcaaggccaatgtgctgggcatcaacctcaacct 3070550
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgg 144
||||||||||||||| | |||||||||||| |||| |||||
Sbjct: 3061606 gacgcgctgaagctgcgggtgtgcgccaacgtgctcaacgg 3061566
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
||||||||||||||| ||||||||||||| |||||
Sbjct: 3100578 gacgcgctgaagctgcacgtgtgcgccaacgtgctg 3100543
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| ||||||||||||| ||||
Sbjct: 3093864 gacgcgctgaagctgcacgtgtgcgccaacgtgct 3093830
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacct 273
|||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 3073891 gcctctgcaccgccgtcaaggccaacgtgctgggcatcaacct 3073849
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 9242154 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 9242213
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 9242214 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 9242273
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 9242274 cctcaacttctgcggcaagggcgtccccaccggcttc 9242310
Score = 85.7 bits (43), Expect = 4e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||| |||
Sbjct: 9124251 gcctctgcaccgccatcaaggccaacgtgctgggcatcaagctcaacctccccatcgacc 9124192
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 9124191 tcagcctcatcctcaacaactgcggca 9124165
Score = 69.9 bits (35), Expect = 2e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || ||| ||||||||||| | |||||| |||
Sbjct: 9117509 gcctctgcaccgccatcaaggccaacgtgctcggcctcaacctcaacatccccatcgacc 9117450
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 9117449 tcagcctcatcctcaacaactgcggca 9117423
Score = 61.9 bits (31), Expect = 6e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || |||||||| ||| |||| ||| || |||
Sbjct: 9120955 gcctctgcaccgccgtcaaggccaacgtgctcggcatcaagctcgacctccccgtcgacc 9120896
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 9120895 tcagcctcatcctcaacaactgcggca 9120869
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 9242079 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 9242115
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacct 279
|||||||||||| | ||| |||||| | ||||||||||||||||||||
Sbjct: 9104217 gcctctgcaccgccgtcaaggccaatgtgctgggcatcaacctcaacct 9104169
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgg 144
||||||||||||||| | |||||||||||| |||| |||||
Sbjct: 9096176 gacgcgctgaagctgcgggtgtgcgccaacgtgctcaacgg 9096136
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
||||||||||||||| ||||||||||||| |||||
Sbjct: 9124378 gacgcgctgaagctgcacgtgtgcgccaacgtgctg 9124343
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| ||||||||||||| ||||
Sbjct: 9117636 gacgcgctgaagctgcacgtgtgcgccaacgtgct 9117602
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacct 273
|||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 9107510 gcctctgcaccgccgtcaaggccaacgtgctgggcatcaacct 9107468
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 20107948 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 20108007
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 20108008 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 20108067
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 20108068 cctcaacttctgcggcaagggcgtccccaccggcttc 20108104
Score = 85.7 bits (43), Expect = 4e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||| |||
Sbjct: 19990045 gcctctgcaccgccatcaaggccaacgtgctgggcatcaagctcaacctccccatcgacc 19989986
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 19989985 tcagcctcatcctcaacaactgcggca 19989959
Score = 69.9 bits (35), Expect = 2e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || ||| ||||||||||| | |||||| |||
Sbjct: 19983303 gcctctgcaccgccatcaaggccaacgtgctcggcctcaacctcaacatccccatcgacc 19983244
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 19983243 tcagcctcatcctcaacaactgcggca 19983217
Score = 61.9 bits (31), Expect = 6e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || |||||||| ||| |||| ||| || |||
Sbjct: 19986749 gcctctgcaccgccgtcaaggccaacgtgctcggcatcaagctcgacctccccgtcgacc 19986690
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 19986689 tcagcctcatcctcaacaactgcggca 19986663
Score = 56.0 bits (28), Expect = 4e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatc 151
||||| ||||||||| | |||||||||||| |||| ||||||||||||
Sbjct: 9403277 gacgccctgaagctgagggtgtgcgccaacctgctcaacgggctgatc 9403230
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 20107873 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 20107909
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacct 279
|||||||||||| | ||| |||||| | ||||||||||||||||||||
Sbjct: 19970011 gcctctgcaccgccgtcaaggccaatgtgctgggcatcaacctcaacct 19969963
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgg 144
||||||||||||||| | |||||||||||| |||| |||||
Sbjct: 19961970 gacgcgctgaagctgcgggtgtgcgccaacgtgctcaacgg 19961930
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 265 catcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||||||||||||||| || |||||||| || || ||||| | |||||||
Sbjct: 9403116 catcaacctcaacctgcccgtcgacctcagcatcatcctcaacaagtgcggca 9403064
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
||||||||||||||| ||||||||||||| |||||
Sbjct: 19990172 gacgcgctgaagctgcacgtgtgcgccaacgtgctg 19990137
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| ||||||||||||| ||||
Sbjct: 19983430 gacgcgctgaagctgcacgtgtgcgccaacgtgct 19983396
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacct 273
|||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 19973304 gcctctgcaccgccgtcaaggccaacgtgctgggcatcaacct 19973262
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 111 tgaagctgggcgtgtgcgccaacttgctgaacgggctg 148
|||||||| | |||||||||||| |||| |||||||||
Sbjct: 9379095 tgaagctgagagtgtgcgccaacgtgctaaacgggctg 9379058
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 21267369 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 21267428
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 21267429 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 21267488
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 21267489 cctcaacttctgcggcaagggcgtccccaccggcttc 21267525
Score = 85.7 bits (43), Expect = 4e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||| |||
Sbjct: 21178257 gcctctgcaccgccatcaaggccaacgtgctgggcatcaagctcaacctccccatcgacc 21178198
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21178197 tcagcctcatcctcaacaactgcggca 21178171
Score = 69.9 bits (35), Expect = 2e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || ||| ||||||||||| | |||||| |||
Sbjct: 21171543 gcctctgcaccgccatcaaggccaacgtgctcggcctcaacctcaacatccccatcgacc 21171484
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21171483 tcagcctcatcctcaacaactgcggca 21171457
Score = 61.9 bits (31), Expect = 6e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || |||||||| ||| |||| ||| || |||
Sbjct: 21174989 gcctctgcaccgccgtcaaggccaacgtgctcggcatcaagctcgacctccccgtcgacc 21174930
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21174929 tcagcctcatcctcaacaactgcggca 21174903
Score = 56.0 bits (28), Expect = 4e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatc 151
||||| ||||||||| | |||||||||||| |||| ||||||||||||
Sbjct: 10072468 gacgccctgaagctgagggtgtgcgccaacctgctcaacgggctgatc 10072421
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 21267294 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 21267330
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacct 279
|||||||||||| | ||| |||||| | ||||||||||||||||||||
Sbjct: 21148404 gcctctgcaccgccgtcaaggccaatgtgctgggcatcaacctcaacct 21148356
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgg 144
||||||||||||||| | |||||||||||| |||| |||||
Sbjct: 21139412 gacgcgctgaagctgcgggtgtgcgccaacgtgctcaacgg 21139372
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 265 catcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||||||||||||||| || |||||||| || || ||||| | |||||||
Sbjct: 10072307 catcaacctcaacctgcccgtcgacctcagcatcatcctcaacaagtgcggca 10072255
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
||||||||||||||| ||||||||||||| |||||
Sbjct: 21178384 gacgcgctgaagctgcacgtgtgcgccaacgtgctg 21178349
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| ||||||||||||| ||||
Sbjct: 21171670 gacgcgctgaagctgcacgtgtgcgccaacgtgct 21171636
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacct 273
|||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 21151697 gcctctgcaccgccgtcaaggccaacgtgctgggcatcaacct 21151655
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 111 tgaagctgggcgtgtgcgccaacttgctgaacgggctg 148
|||||||| | |||||||||||| |||| |||||||||
Sbjct: 10048288 tgaagctgagagtgtgcgccaacgtgctaaacgggctg 10048251
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 121 bits (61), Expect = 8e-025
Identities = 133/157 (84%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | | ||||||| ||||||| ||||||||||| |||| |||||
Sbjct: 21278633 gccgtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcac 21278692
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |
Sbjct: 21278693 ggccatcaaggccaacgtgctgggcatcaacctcaacctccccatccacctcagcctcat 21278752
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| |||||| |||||||| | |||||||| | ||||||
Sbjct: 21278753 cctcaacttctgcggcaagggcgtccccaccggcttc 21278789
Score = 85.7 bits (43), Expect = 4e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| ||||||||||| |||||||| |||||| |||
Sbjct: 21189521 gcctctgcaccgccatcaaggccaacgtgctgggcatcaagctcaacctccccatcgacc 21189462
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21189461 tcagcctcatcctcaacaactgcggca 21189435
Score = 69.9 bits (35), Expect = 2e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || ||| ||||||||||| | |||||| |||
Sbjct: 21182807 gcctctgcaccgccatcaaggccaacgtgctcggcctcaacctcaacatccccatcgacc 21182748
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21182747 tcagcctcatcctcaacaactgcggca 21182721
Score = 61.9 bits (31), Expect = 6e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacc 290
|||||||||||| | ||| |||||||| || |||||||| ||| |||| ||| || |||
Sbjct: 21186253 gcctctgcaccgccgtcaaggccaacgtgctcggcatcaagctcgacctccccgtcgacc 21186194
Query: 291 tcagcctcctcgtcaactactgcggca 317
|||||||| || ||||| |||||||||
Sbjct: 21186193 tcagcctcatcctcaacaactgcggca 21186167
Score = 56.0 bits (28), Expect = 4e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgggctgatc 151
||||| ||||||||| | |||||||||||| |||| ||||||||||||
Sbjct: 10078507 gacgccctgaagctgagggtgtgcgccaacctgctcaacgggctgatc 10078460
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 103 ggacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||| |||||||| ||| |||||
Sbjct: 21278558 ggacgcgctgaagctgggggtgtgcgcgaacgtgctg 21278594
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacct 279
|||||||||||| | ||| |||||| | ||||||||||||||||||||
Sbjct: 21159668 gcctctgcaccgccgtcaaggccaatgtgctgggcatcaacctcaacct 21159620
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctgaacgg 144
||||||||||||||| | |||||||||||| |||| |||||
Sbjct: 21150676 gacgcgctgaagctgcgggtgtgcgccaacgtgctcaacgg 21150636
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 265 catcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggca 317
||||||||||||||||||| || |||||||| || || ||||| | |||||||
Sbjct: 10078346 catcaacctcaacctgcccgtcgacctcagcatcatcctcaacaagtgcggca 10078294
Score = 48.1 bits (24), Expect = 0.009
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
||||||||||||||| ||||||||||||| |||||
Sbjct: 21189648 gacgcgctgaagctgcacgtgtgcgccaacgtgctg 21189613
Score = 46.1 bits (23), Expect = 0.036
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgct 138
||||||||||||||| ||||||||||||| ||||
Sbjct: 21182934 gacgcgctgaagctgcacgtgtgcgccaacgtgct 21182900
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 231 gcctctgcaccgtcctcagggccaacggcctgggcatcaacct 273
|||||||||||| | ||| |||||||| ||||||||||||||
Sbjct: 21162961 gcctctgcaccgccgtcaaggccaacgtgctgggcatcaacct 21162919
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 111 tgaagctgggcgtgtgcgccaacttgctgaacgggctg 148
|||||||| | |||||||||||| |||| |||||||||
Sbjct: 10054327 tgaagctgagagtgtgcgccaacgtgctaaacgggctg 10054290
>gb|CA999379.1|CA999379 S234G_H12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 385
Score = 109 bits (55), Expect = 3e-021
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 265 catcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgcgt 324
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct: 1 catcaacctcaacctccccatcaacctcagcctcctcgtcaactactgcggccgctccgt 60
Query: 325 cccctcgggcttccagtgc 343
|||||| ||||||||||||
Sbjct: 61 cccctccggcttccagtgc 79
>gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 521
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 323 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 382
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 383 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 442
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 443 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 486
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 249 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 284
>gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 706
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 197 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 256
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 257 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 316
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 317 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 360
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 123 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 158
>gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 958
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 326 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 385
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 386 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 445
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 446 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 489
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 252 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 287
>gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, complete cds
Length = 715
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 261 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 320
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 321 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 380
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 381 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 424
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 187 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 222
>dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F07, full
insert sequence
Length = 833
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 336 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 395
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 396 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 455
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 456 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 499
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 262 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 297
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0516F12
Length = 146364
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 89869 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 89928
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 89929 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 89988
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 89989 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 90032
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 99536 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 99595
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 99596 agcctcctcgtcaactactgcggca 99620
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 89795 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 89830
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1001_D02
Length = 129081
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 2359 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 2418
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 2419 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 2478
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 2479 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 2522
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 12026 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 12085
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 12086 agcctcctcgtcaactactgcggca 12110
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 2285 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 2320
>gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005096, whole
genome shotgun sequence
Length = 37135
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 11999 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 12058
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 12059 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 12118
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 12119 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 12162
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 21611 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 21670
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 21671 agcctcctcgtcaactactgcggca 21695
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 11925 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 11960
>ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 833
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 336 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 395
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 396 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 455
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 456 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 499
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 262 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 297
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 1988815 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 1988874
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 1988875 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 1988934
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 1988935 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 1988978
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 1998482 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 1998541
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 1998542 agcctcctcgtcaactactgcggca 1998566
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 1988741 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 1988776
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 13266405 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 13266464
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 13266465 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 13266524
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 13266525 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 13266568
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 13276017 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 13276076
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 13276077 agcctcctcgtcaactactgcggca 13276101
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 13266331 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 13266366
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 49 aagcggtggcggcggcggatctggcggcggg 79
|||||||||||||||||||||||||| ||||
Sbjct: 2870868 aagcggtggcggcggcggatctggcgtcggg 2870838
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 26719469 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 26719528
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 26719529 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 26719588
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 26719589 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 26719632
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 26729081 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 26729140
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 26729141 agcctcctcgtcaactactgcggca 26729165
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 26719395 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 26719430
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 49 aagcggtggcggcggcggatctggcggcggg 79
|||||||||||||||||||||||||| ||||
Sbjct: 16323932 aagcggtggcggcggcggatctggcgtcggg 16323902
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 49 aagcggtggcggcggcggatctggcggcgggcc 81
|||||||||||||||||||||||| | ||||||
Sbjct: 8361483 aagcggtggcggcggcggatctggtgtcgggcc 8361515
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 103 bits (52), Expect = 2e-019
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 26823816 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 26823875
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 26823876 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 26823935
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgct 344
| ||||||||||||||| | ||||||| | |||||| ||||||
Sbjct: 26823936 cctcaactactgcggcaagaccgtccccaccggcttcaagtgct 26823979
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 233 ctctgcaccgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctc 292
|||||||||| | ||| |||||||| || ||||||| |||| || | ||| |||| |||
Sbjct: 26833483 ctctgcaccgccatcaaggccaacgtgctcggcatcaccctcgacatccccgtcaagctc 26833542
Query: 293 agcctcctcgtcaactactgcggca 317
|||||||||||||||||||||||||
Sbjct: 26833543 agcctcctcgtcaactactgcggca 26833567
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 26823742 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 26823777
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 49 aagcggtggcggcggcggatctggcggcggg 79
|||||||||||||||||||||||||| ||||
Sbjct: 16698239 aagcggtggcggcggcggatctggcgtcggg 16698209
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 49 aagcggtggcggcggcggatctggcggcgggcc 81
|||||||||||||||||||||||| | ||||||
Sbjct: 8231507 aagcggtggcggcggcggatctggtgtcgggcc 8231539
>gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-M22, mRNA sequence
Length = 488
Score = 97.6 bits (49), Expect = 1e-017
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 337 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 396
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 397 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 456
Query: 301 cgtcaactactgcggca 317
| |||||||||||||||
Sbjct: 457 cctcaactactgcggca 473
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 263 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 298
>gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-P16, mRNA sequence
Length = 475
Score = 97.6 bits (49), Expect = 1e-017
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 339 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 398
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||||| |||| ||| || |||||||||||||| |||||| ||||||||||| |
Sbjct: 399 ggccatcaggggcaacatcctcggaatcaacctcaacctccccatcgacctcagcctcat 458
Query: 301 cgtcaactactgcggca 317
| |||||||||||||||
Sbjct: 459 cctcaactactgcggca 475
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 265 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 300
>gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010254, whole
genome shotgun sequence
Length = 23371
Score = 93.7 bits (47), Expect = 2e-016
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 4269 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 4210
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| || |||| || ||||||||||| ||||| ||| || ||||||||||| |
Sbjct: 4209 ggccatcaagggcaacattctcggcatcaaccttaacctccccgtcgacctcagcctcat 4150
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgcttct 347
| ||||||||||||||| |||||| ||| | |||||| |||||||||
Sbjct: 4149 cctcaactactgcggcaagcgcgtgcccaccggcttcaagtgcttct 4103
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgc 322
||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| ||||
Sbjct: 7387 ggcatcaacctcaacctccccgtcgacctcagcctcatcctcaactactgcggcaagcgc 7328
Query: 323 gtcccctcgggcttc 337
|| ||| | ||||||
Sbjct: 7327 gtgcccaccggcttc 7313
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 7544 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 7509
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 4343 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 4308
>ref|XM_473449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 396
Score = 93.7 bits (47), Expect = 2e-016
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 228 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 287
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| || |||| || ||||||||||| ||||| ||| || ||||||||||| |
Sbjct: 288 ggccatcaagggcaacattctcggcatcaaccttaacctccccgtcgacctcagcctcat 347
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgcttct 347
| ||||||||||||||| |||||| ||| | |||||| |||||||||
Sbjct: 348 cctcaactactgcggcaagcgcgtgcccaccggcttcaagtgcttct 394
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 154 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 189
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 93.7 bits (47), Expect = 2e-016
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 1493496 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 1493555
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| || |||| || ||||||||||| ||||| ||| || ||||||||||| |
Sbjct: 1493556 ggccatcaagggcaacattctcggcatcaaccttaacctccccgtcgacctcagcctcat 1493615
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgcttct 347
| ||||||||||||||| |||||| ||| | |||||| |||||||||
Sbjct: 1493616 cctcaactactgcggcaagcgcgtgcccaccggcttcaagtgcttct 1493662
Score = 89.7 bits (45), Expect = 3e-015
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| |||||||||| ||||||||||
Sbjct: 1490296 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 1490355
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | |||| | |||| ||| ||||||||||||||||| ||| || ||||||||||| |
Sbjct: 1490356 ggccatcagaggcaacatcctcggcatcaacctcaacctccccgtcgacctcagcctcat 1490415
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttc 337
| ||||||||||||||| |||||| ||| | ||||||
Sbjct: 1490416 cctcaactactgcggcaagcgcgtgcccaccggcttc 1490452
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 1493422 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 1493457
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 1490222 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 1490257
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 93.7 bits (47), Expect = 2e-016
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 5544722 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 5544781
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| || |||| || ||||||||||| ||||| ||| || ||||||||||| |
Sbjct: 5544782 ggccatcaagggcaacattctcggcatcaaccttaacctccccgtcgacctcagcctcat 5544841
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgcttct 347
| ||||||||||||||| |||||| ||| | |||||| |||||||||
Sbjct: 5544842 cctcaactactgcggcaagcgcgtgcccaccggcttcaagtgcttct 5544888
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgc 322
||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| ||||
Sbjct: 5541604 ggcatcaacctcaacctccccgtcgacctcagcctcatcctcaactactgcggcaagcgc 5541663
Query: 323 gtcccctcgggcttc 337
|| ||| | ||||||
Sbjct: 5541664 gtgcccaccggcttc 5541678
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 5544648 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 5544683
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 5541447 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 5541482
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 93.7 bits (47), Expect = 2e-016
Identities = 137/167 (82%)
Strand = Plus / Plus
Query: 181 gccgtgctgcacgctgatccaggggctggcggacctgaaggcggcggtgggcctctgcac 240
|||||||||| ||||| | ||||||| | ||||| ||||||||||| ||||||||||
Sbjct: 24688821 gccgtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 24688880
Query: 241 cgtcctcagggccaacggcctgggcatcaacctcaacctgcccatcaacctcagcctcct 300
| | ||| || |||| || ||||||||||| ||||| ||| || ||||||||||| |
Sbjct: 24688881 ggccatcaagggcaacattctcggcatcaaccttaacctccccgtcgacctcagcctcat 24688940
Query: 301 cgtcaactactgcggcaggcgcgtcccctcgggcttccagtgcttct 347
| ||||||||||||||| |||||| ||| | |||||| |||||||||
Sbjct: 24688941 cctcaactactgcggcaagcgcgtgcccaccggcttcaagtgcttct 24688987
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 263 ggcatcaacctcaacctgcccatcaacctcagcctcctcgtcaactactgcggcaggcgc 322
||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| ||||
Sbjct: 24685703 ggcatcaacctcaacctccccgtcgacctcagcctcatcctcaactactgcggcaagcgc 24685762
Query: 323 gtcccctcgggcttc 337
|| ||| | ||||||
Sbjct: 24685763 gtgcccaccggcttc 24685777
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 24688747 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 24688782
Score = 63.9 bits (32), Expect = 2e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 gacgcgctgaagctgggcgtgtgcgccaacttgctg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 24685546 gacgcgctgaagctgggcgtgtgcgccaacgtgctg 24685581
Score = 60.0 bits (30), Expect = 2e-006
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 564 aagatgcaggaatttccagactggcaaacatctgcatt 601
||||||||| ||||||| ||||||||||||||||||||
Sbjct: 9006911 aagatgcagcaatttcctgactggcaaacatctgcatt 9006948
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,123,771
Number of Sequences: 438736
Number of extensions: 2123771
Number of successful extensions: 29932
Number of sequences better than 0.5: 238
Number of HSP's better than 0.5 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25877
Number of HSP's gapped (non-prelim): 4031
length of query: 989
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 968
effective length of database: 2,791,206,460
effective search space: 2701887853280
effective search space used: 2701887853280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)