BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 204 5e-050
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 204 5e-050
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 204 5e-050
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 204 5e-050
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 204 5e-050
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 204 5e-050
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 204 5e-050
gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (j... 151 6e-034
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 151 6e-034
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 151 6e-034
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 151 6e-034
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 151 6e-034
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 151 6e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 151 6e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 151 6e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 66 3e-008
gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 44 0.099
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 44 0.099
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 155414 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 155355
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 155354 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 155295
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 155294 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 155235
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 155234 caagaaagaccgatcaacccggaacaa 155208
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 155592 gtttgcatccttgctttcatgccaactggatggggcttgct 155552
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 155414 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 155355
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 155354 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 155295
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 155294 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 155235
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 155234 caagaaagaccgatcaacccggaacaa 155208
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 155592 gtttgcatccttgctttcatgccaactggatggggcttgct 155552
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 16616 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 16557
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 16556 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 16497
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 16496 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 16437
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 16436 caagaaagaccgatcaacccggaacaa 16410
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 16794 gtttgcatccttgctttcatgccaactggatggggcttgct 16754
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Plus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 5103 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 5162
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 5163 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 5222
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 5223 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 5282
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 5283 caagaaagaccgatcaacccggaacaa 5309
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 4925 gtttgcatccttgctttcatgccaactggatggggcttgct 4965
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 11850072 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 11850013
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 11850012 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 11849953
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 11849952 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 11849893
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 11849892 caagaaagaccgatcaacccggaacaa 11849866
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 11850250 gtttgcatccttgctttcatgccaactggatggggcttgct 11850210
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 29548809 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 29548750
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 29548749 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 29548690
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 29548689 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 29548630
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 29548629 caagaaagaccgatcaacccggaacaa 29548603
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 29548987 gtttgcatccttgctttcatgccaactggatggggcttgct 29548947
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 3910692 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 3910633
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 3910632 ggcctccagatctcccg 3910616
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 204 bits (103), Expect = 5e-050
Identities = 181/207 (87%)
Strand = Plus / Minus
Query: 150 tgggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttct 209
|||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 30518053 tgggctttggggatcaatcaaggctcttgcccggggctatgagatcctaatgggactcct 30517994
Query: 210 cctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccag 269
| ||||| ||||| || ||||| || ||||| || |||||||| || |||||||||||
Sbjct: 30517993 gttattcacacccatagcgttccttgcttggtttcctttcgtgtccgagttccagaccag 30517934
Query: 270 gatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggaca 329
|||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct: 30517933 gatgctcttcaaccaggccttcagcagaggtctgcagatctcccgtatccttggcgggca 30517874
Query: 330 caagaaagaccgagggacccggaacaa 356
||||||||||||| |||||||||||
Sbjct: 30517873 caagaaagaccgatcaacccggaacaa 30517847
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 70 gtttgcatccttgctttcatgcccactggatggggtttgct 110
||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 30518231 gtttgcatccttgctttcatgccaactggatggggcttgct 30518191
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 4078040 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 4077981
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 4077980 ggcctccagatctcccg 4077964
>gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 3', mRNA sequence
Length = 760
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Minus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 320 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 261
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 260 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 201
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 200 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 141
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 140 gaccgagctacacggaacaa 121
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctgctgattgc 119
|||||| ||||||||||| ||||| |||||||| ||||| |||||| ||||| || ||||
Sbjct: 417 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgc 358
Query: 120 ccaagc 125
|||||
Sbjct: 357 gcaagc 352
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 2521 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 2580
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 2581 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 2640
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 2641 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 2700
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 2701 gaccgagctacacggaacaa 2720
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctgctgattgc 119
|||||| ||||||||||| ||||| |||||||| ||||| |||||| ||||| || ||||
Sbjct: 2424 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgc 2483
Query: 120 ccaagc 125
|||||
Sbjct: 2484 gcaagc 2489
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 731 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 790
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 791 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 850
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 851 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 910
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 911 gaccgagctacacggaacaa 930
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctgctgattgc 119
|||||| ||||||||||| ||||| |||||||| ||||| |||||| ||||| || ||||
Sbjct: 634 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgc 693
Query: 120 ccaagc 125
|||||
Sbjct: 694 gcaagc 699
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 93142 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 93201
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 93202 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 93261
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 93262 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 93321
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 93322 gaccgagctacacggaacaa 93341
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 92967 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 93018
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 12973 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 13032
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 13033 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 13092
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 13093 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 13152
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 13153 gaccgagctacacggaacaa 13172
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 12798 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 12849
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 7497 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 7556
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 7557 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 7616
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 7617 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 7676
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 7677 gaccgagctacacggaacaa 7696
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 7322 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 7373
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 5704 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 5763
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 5764 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 5823
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 5824 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 5883
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 5884 gaccgagctacacggaacaa 5903
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctgctgattgc 119
|||||| ||||||||||| ||||| |||||||| ||||| |||||| ||||| || ||||
Sbjct: 5607 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctgttggttgc 5666
Query: 120 ccaagc 125
|||||
Sbjct: 5667 gcaagc 5672
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 1657700 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 1657759
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 1657760 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 1657819
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 1657820 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 1657879
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 1657880 gaccgagctacacggaacaa 1657899
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 1657525 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 1657576
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 22451606 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 22451665
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 22451666 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 22451725
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 22451726 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 22451785
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 22451786 gaccgagctacacggaacaa 22451805
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 22451431 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 22451482
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 35904670 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 35904729
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 35904730 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 35904789
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 35904790 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 35904849
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 35904850 gaccgagctacacggaacaa 35904869
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 35904495 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 35904546
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 157 tggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctcctgttc 216
||||| ||||||||||| ||||| |||| || |||||| | ||||| || || || |||
Sbjct: 35822427 tggggatcgatcaaggcgcttgcgaggggatatgagatcatcatggggctcctgctcttc 35822486
Query: 217 acgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctg 276
|| || ||||| |||||||| ||||||||||| || || || ||||||||||| |||||
Sbjct: 35822487 accccgatcgcgttcctcgcttggttcccgtttgtatccgagttccagaccagaatgctc 35822546
Query: 277 ttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaa 336
||||||||||| ||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct: 35822547 ttcaaccaggccttcagcagaggtctgcagatctcgcgaatccttggcggccacaagaaa 35822606
Query: 337 gaccgagggacccggaacaa 356
||||||| || ||||||||
Sbjct: 35822607 gaccgagctacacggaacaa 35822626
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgctg 111
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||
Sbjct: 35822252 ggacatctttgtttgcattcttgccttcatgccaactggctggggtctgctg 35822303
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 38830 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 38771
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 38770 ggcctccagatctcccg 38754
>gb|AACV01013161.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013161, whole
genome shotgun sequence
Length = 8989
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 1351 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 1410
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 1411 ggcctccagatctcccg 1427
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 11299 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 11240
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 11239 ggcctccagatctcccg 11223
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 121693 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 121634
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 121633 ggcctccagatctcccg 121617
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| ||||| || || |||||||| ||| |||| ||||||||||| |||||| ||
Sbjct: 3910692 tggttccccttcgtctccgagttccagacgaggctgctcttcaaccaggccttcagccga 3910633
Query: 298 ggtctgcagatctcccg 314
|| || |||||||||||
Sbjct: 3910632 ggcctccagatctcccg 3910616
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 6826 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 6767
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 6766 aaccaggccttcagccgggggctgcagatctcc 6734
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 19378578 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 19378519
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 19378518 aaccaggccttcagccgggggctgcagatctcc 19378486
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 19333515 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19333456
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 19333455 ggcctccagatctc 19333442
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 5497 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 5556
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 5557 aaccaggccttcagccgggggctgcagatctcc 5589
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 2296810 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 2296751
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 2296750 aaccaggccttcagccgggggctgcagatctcc 2296718
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 2251747 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 2251688
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 2251687 ggcctccagatctc 2251674
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 119482 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 119423
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 119422 aaccaggccttcagccgggggctgcagatctcc 119390
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 74419 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 74360
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 74359 ggcctccagatctc 74346
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 27866 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 27807
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 27806 aaccaggccttcagccgggggctgcagatctcc 27774
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 2430241 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 2430182
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 2430181 aaccaggccttcagccgggggctgcagatctcc 2430149
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 2384633 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 2384574
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 2384573 ggcctccagatctc 2384560
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 19055364 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 19055305
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 19055304 aaccaggccttcagccgggggctgcagatctcc 19055272
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 19009756 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19009697
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 19009696 ggcctccagatctc 19009683
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 19299861 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 19299802
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
|||||||| |||||| | || ||||||||||||
Sbjct: 19299801 aaccaggccttcagccgggggctgcagatctcc 19299769
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 19254798 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 19254739
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 19254738 ggcctccagatctc 19254725
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 7833 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 7774
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 7773 ggcctccagatctc 7760
>ref|NM_193203.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1809
Score = 44.1 bits (22), Expect = 0.099
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
|||||||| |||||||| || |||||||| | |||| ||||||||||| |||||| |
Sbjct: 1535 tggttccccttcgtgtccgagttccagacacgactgctcttcaaccaggccttcagccgt 1594
Query: 298 ggtctgcagatctc 311
|| || ||||||||
Sbjct: 1595 ggcctccagatctc 1608
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 42.1 bits (21), Expect = 0.39
Identities = 75/93 (80%)
Strand = Plus / Plus
Query: 220 cccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgttc 279
||||||||| |||| | |||||||| ||||| || || || ||||| || |||| |||
Sbjct: 1565 cccatcgccgtcctgtcgtggttccccttcgtctccgagtttcagactcggctgctcttc 1624
Query: 280 aaccaggcgttcagcagaggtctgcagatctcc 312
| |||||| |||||| | || ||||||||||||
Sbjct: 1625 agccaggccttcagccgggggctgcagatctcc 1657
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 780,368
Number of Sequences: 438736
Number of extensions: 780368
Number of successful extensions: 3798
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3672
Number of HSP's gapped (non-prelim): 126
length of query: 690
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 669
effective length of database: 2,791,206,460
effective search space: 1867317121740
effective search space used: 1867317121740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)