BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100780.1| Oryza sativa (japonica cultivar-group) cDNA... 870 0.0
dbj|AK060798.1| Oryza sativa (japonica cultivar-group) cDNA... 854 0.0
gb|CA998422.1|CA998422 S345D_F07 Rice cold stress germinati... 670 0.0
gb|CF303758.1|CF303758 ABF1--03-C05.g1 ABF3-overexpressing ... 569 e-159
gb|AC135208.3| Oryza sativa (japonica cultivar-group) chrom... 315 3e-083
gb|AACV01006286.1| Oryza sativa (japonica cultivar-group) c... 315 3e-083
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 315 3e-083
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 315 3e-083
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 315 3e-083
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 315 3e-083
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 315 3e-083
gb|AU101989.1|AU101989 AU101989 Rice shoot Oryza sativa (ja... 82 8e-013
gb|AQ915972.1|AQ915972 nbeb0060P06r CUGI Rice BAC Library (... 48 0.011
gb|CB643118.1|CB643118 OSJNEb03K09.r OSJNEb Oryza sativa (j... 48 0.011
dbj|AK100142.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.011
gb|AACV01009793.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
ref|NM_185226.2| Oryza sativa (japonica cultivar-group), p... 48 0.011
ref|NT_079860.2| Oryza sativa (japonica cultivar-group) 48 0.011
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC... 48 0.011
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|AC134931.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|AACV01010800.1| Oryza sativa (japonica cultivar-group) c... 46 0.043
ref|XM_475552.1| Oryza sativa (japonica cultivar-group), p... 46 0.043
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 46 0.043
gb|AC129720.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.043
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.043
gb|AU067911.1|AU067911 AU067911 Rice callus Oryza sativa (j... 44 0.17
dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chro... 44 0.17
dbj|AK069794.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
dbj|AP004266.3| Oryza sativa (japonica cultivar-group) geno... 44 0.17
gb|AACV01016272.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|XM_478196.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.17
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.17
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>dbj|AK100780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120G02, full
insert sequence
Length = 2447
Score = 870 bits (439), Expect = 0.0
Identities = 770/879 (87%), Gaps = 1/879 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 1284 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 1343
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 1344 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 1403
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 1404 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 1462
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 1463 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 1522
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaaagtctga 309
||||||||||| ||||||| |||||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 1523 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatgaaaaatctga 1582
Query: 310 acagttggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtctta 369
||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct: 1583 acagttggactgggatgcacgtattaacataatacttggagctgcaaaaggcctggctta 1642
Query: 370 cttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatctt 429
|||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1643 tttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcgagcaacatctt 1702
Query: 430 gcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagagga 489
|| ||||||| ||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 1703 actagacggcaattttgaggctcgtgtatcagactttggactcgcaaagctattagagga 1762
Query: 490 cgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagta 549
||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 1763 cgacaaatcccatattactacaatagttgcaggaacatttggctatcttgcaccagagta 1822
Query: 550 tatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggtact 609
|||||| ||||||||||||||| ||||| || |||||||||||||| ||| || ||||
Sbjct: 1823 tatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagttttgctact 1882
Query: 610 tgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggattaaacat 669
||||||||| |||||||| |||||||| |||||||| || ||||| |||||||| |||||
Sbjct: 1883 tgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaagggattgaacat 1942
Query: 670 tgttggatggttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaa 729
|||||||||||| ||||| |||| || ||||| |||||||||||||| ||||||| |
Sbjct: 1943 tgttggatggttgaatttcctggtcggtgagaatcgggagagggaaattgtcgatccata 2002
Query: 730 ttgtgaaggagtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgt 789
|||||| |||||||| | ||||||||||| ||||| || ||||| || || || |||||
Sbjct: 2003 ttgtgagggagtgcagattgagaccttggatgctctactttctcttgctaaacaatgtgt 2062
Query: 790 cagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctggagtcgga 849
|| |||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 2063 aagttctttgccagaggagcggcctacaatgcacagggtggtacagatgttggagtcgga 2122
Query: 850 tgtaattacgccgtgccctagcgacttctacgattcaga 888
||||||||| || ||||| || || ||||||||||||||
Sbjct: 2123 tgtaattacaccatgccccagtgatttctacgattcaga 2161
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 2211 tttcctgtggaggcacattccatttattctttgcagat 2248
>dbj|AK060798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F02, full
insert sequence
Length = 1311
Score = 854 bits (431), Expect = 0.0
Identities = 768/879 (87%), Gaps = 1/879 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 188 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 247
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| ||| |||||||| |||
Sbjct: 248 ttcgggacggtttataaacttgcaatggatgacggtaatgtttctgcattgaaaaggata 307
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 308 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 366
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 367 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 426
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaaagtctga 309
||||||||||| ||||||| |||||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 427 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatgaaaaatctga 486
Query: 310 acagttggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtctta 369
||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct: 487 acagttggactgggatgcacgtattaacataatacttggagctgcaaaaggcctggctta 546
Query: 370 cttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatctt 429
|||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 547 tttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcgagcaacatctt 606
Query: 430 gcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagagga 489
|| ||||||| ||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 607 actagacggcaattttgaggctcgtgtatcagactttggactcgcaaagctattagagga 666
Query: 490 cgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagta 549
||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 667 cgacaaatcccatattactacaatagttgcaggaacatttggctatcttgcaccagagta 726
Query: 550 tatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggtact 609
|||||| ||||||||||||||| ||||| || |||||||||||||| ||| || ||||
Sbjct: 727 tatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagttttgctact 786
Query: 610 tgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggattaaacat 669
||||||||| |||||||| |||||||| ||| |||| || ||||| |||||||| |||||
Sbjct: 787 tgaaatactaagcggaaaacgacctactgattcatcatttattgaaaagggattgaacat 846
Query: 670 tgttggatggttaaattttctggctggcgagaaccgggagagggaaatcgtcgatctgaa 729
|||||||||||| ||||| |||| || ||||| |||||||||||||| ||||||| |
Sbjct: 847 tgttggatggttgaatttcctggtcggtgagaatcgggagagggaaattgtcgatccata 906
Query: 730 ttgtgaaggagtgcacaccgagaccttggacgctctgctctctctcgccaagcagtgtgt 789
|||||| |||||||| | ||||||||||| ||||| || ||||| || || || |||||
Sbjct: 907 ttgtgagggagtgcagattgagaccttggatgctctactttctcttgctaaacaatgtgt 966
Query: 790 cagctctttgccggaggagcggccgacgatgcacagggtggtacagatgctggagtcgga 849
|| |||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 967 aagttctttgccagaggagcggcctacaatgcacagggtggtacagatgttggagtcgga 1026
Query: 850 tgtaattacgccgtgccctagcgacttctacgattcaga 888
||||||||| || ||||| || || ||||||||||||||
Sbjct: 1027 tgtaattacaccatgccccagtgatttctacgattcaga 1065
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 1115 tttcctgtggaggcacattccatttattctttgcagat 1152
>gb|CA998422.1|CA998422 S345D_F07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 675
Score = 670 bits (338), Expect = 0.0
Identities = 574/650 (88%), Gaps = 2/650 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 28 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 87
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 88 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 147
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 148 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 206
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 207 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 266
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaaagtctga 309
||||||||||| ||||||| |||||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 267 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatgaaaaatctga 326
Query: 310 acagttggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtctta 369
||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct: 327 acagttggactgggatgcacgtattaacataatacttggagctgcaaaaggcctggctta 386
Query: 370 cttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatctt 429
|||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 387 tttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcgagcaacatctt 446
Query: 430 gcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagagga 489
|| ||||||| ||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 447 actagacggcaattttgaggctcgtgtatcagactttggactcgcaaagctattagagga 506
Query: 490 cgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagta 549
||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 507 cgacaaatcccatattactacaatagttgcaggaacatttggctatcttgcaccagagta 566
Query: 550 tatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggtact 609
|||||| ||||||||||||||| ||||| || |||||||||||||| ||| || ||||
Sbjct: 567 tatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagttttgctact 626
Query: 610 tgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagg 659
||||||||| |||||||| |||||||| |||||||| || ||||| ||||
Sbjct: 627 tgaaatact-agcggaaaacgacctactgatgcatcatttattgaaaagg 675
>gb|CF303758.1|CF303758 ABF1--03-C05.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-C05, mRNA sequence
Length = 558
Score = 569 bits (287), Expect = e-159
Identities = 471/531 (88%), Gaps = 1/531 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 26 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 85
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 86 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 145
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 146 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 204
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 205 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 264
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatgaaaagtctga 309
||||||||||| ||||||| |||||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 265 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatgaaaaatctga 324
Query: 310 acagttggattgggatgcacgtattaacatcatacttggagctgcaaaaggcttgtctta 369
||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct: 325 acagttggactgggatgcacgtattaacataatacttggagctgcaaaaggcctggctta 384
Query: 370 cttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcgagcaacatctt 429
|||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 385 tttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcgagcaacatctt 444
Query: 430 gcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaagcttttagagga 489
|| ||||||| ||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 445 actagacggcaattttgaggctcgtgtatcagactttggactcgcaaagctattagagga 504
Query: 490 cgaagaatcccatatcactacaatagttgcaggaacatttggttatcttgc 540
||| |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 505 cgacaaatcccatattactacaatagttgcaggaacatttggctatcttgc 555
>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
complete sequence
Length = 112265
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 47811 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 47870
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 47871 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 47930
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 47931 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 47990
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 47991 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 48050
Query: 539 gcgccag 545
|| ||||
Sbjct: 48051 gcaccag 48057
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 46503 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 46562
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 46563 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 46622
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 46623 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 46681
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 46682 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 46741
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 46742 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 46791
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 48468 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 48527
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 48528 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 48587
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 48588 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 48647
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 48648 tacgattcaga 48658
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 48198 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 48257
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 48258 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 48317
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 48318 ttgaacattgttggatgg 48335
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 48708 tttcctgtggaggcacattccatttattctttgcagat 48745
>gb|AACV01006286.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006286, whole
genome shotgun sequence
Length = 33933
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Minus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 26761 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 26702
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 26701 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 26642
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 26641 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 26582
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 26581 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 26522
Query: 539 gcgccag 545
|| ||||
Sbjct: 26521 gcaccag 26515
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 28069 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 28010
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 28009 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 27950
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 27949 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 27891
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 27890 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 27831
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 27830 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 27781
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Minus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 26104 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 26045
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 26044 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 25985
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 25984 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 25925
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 25924 tacgattcaga 25914
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Minus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 26374 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 26315
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 26314 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 26255
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 26254 ttgaacattgttggatgg 26237
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 25864 tttcctgtggaggcacattccatttattctttgcagat 25827
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 148309 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 148368
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 148369 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 148428
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 148429 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 148488
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 148489 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 148548
Query: 539 gcgccag 545
|| ||||
Sbjct: 148549 gcaccag 148555
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 147001 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 147060
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 147061 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 147120
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 147121 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 147179
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 147180 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 147239
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 147240 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 147289
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 148966 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 149025
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 149026 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 149085
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 149086 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 149145
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 149146 tacgattcaga 149156
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 148696 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 148755
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 148756 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 148815
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 148816 ttgaacattgttggatgg 148833
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 149206 tttcctgtggaggcacattccatttattctttgcagat 149243
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 8763242 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 8763301
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 8763302 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 8763361
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 8763362 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 8763421
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 8763422 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 8763481
Query: 539 gcgccag 545
|| ||||
Sbjct: 8763482 gcaccag 8763488
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 8761934 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 8761993
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 8761994 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 8762053
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 8762054 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 8762112
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 8762113 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 8762172
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 8762173 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 8762222
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 8763899 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 8763958
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 8763959 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 8764018
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 8764019 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 8764078
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 8764079 tacgattcaga 8764089
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 8763629 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 8763688
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 8763689 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 8763748
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 8763749 ttgaacattgttggatgg 8763766
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 8764139 tttcctgtggaggcacattccatttattctttgcagat 8764176
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 8955604 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 8955663
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 8955664 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 8955723
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 8955724 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 8955783
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 8955784 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 8955843
Query: 539 gcgccag 545
|| ||||
Sbjct: 8955844 gcaccag 8955850
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 8954296 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 8954355
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 8954356 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 8954415
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 8954416 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 8954474
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 8954475 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 8954534
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 8954535 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 8954584
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 8956261 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 8956320
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 8956321 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 8956380
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 8956381 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 8956440
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 8956441 tacgattcaga 8956451
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 8955991 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 8956050
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 8956051 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 8956110
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 8956111 ttgaacattgttggatgg 8956128
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 8956501 tttcctgtggaggcacattccatttattctttgcagat 8956538
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 8802493 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 8802552
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 8802553 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 8802612
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 8802613 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 8802672
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 8802673 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 8802732
Query: 539 gcgccag 545
|| ||||
Sbjct: 8802733 gcaccag 8802739
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 8801185 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 8801244
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 8801245 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 8801304
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 8801305 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 8801363
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 8801364 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 8801423
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 8801424 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 8801473
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 8803150 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 8803209
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 8803210 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 8803269
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 8803270 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 8803329
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 8803330 tacgattcaga 8803340
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 8802880 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 8802939
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 8802940 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 8802999
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 8803000 ttgaacattgttggatgg 8803017
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 8803390 tttcctgtggaggcacattccatttattctttgcagat 8803427
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 315 bits (159), Expect = 3e-083
Identities = 225/247 (91%)
Strand = Plus / Plus
Query: 299 gaaaagtctgaacagttggattgggatgcacgtattaacatcatacttggagctgcaaaa 358
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 8804658 gaaaaatctgaacagttggactgggatgcacgtattaacataatacttggagctgcaaaa 8804717
Query: 359 ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatatcaagtcg 418
||| || |||| |||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct: 8804718 ggcctggcttatttgcatcatgattgttcacctcgaataatacatcgtgatattaaatcg 8804777
Query: 419 agcaacatcttgcttgacggcagttttgaggcccgcgtatcagactttggacttgcaaag 478
||||||||||| || ||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct: 8804778 agcaacatcttactagacggcaattttgaggctcgtgtatcagactttggactcgcaaag 8804837
Query: 479 cttttagaggacgaagaatcccatatcactacaatagttgcaggaacatttggttatctt 538
|| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 8804838 ctattagaggacgacaaatcccatattactacaatagttgcaggaacatttggctatctt 8804897
Query: 539 gcgccag 545
|| ||||
Sbjct: 8804898 gcaccag 8804904
Score = 258 bits (130), Expect = 6e-066
Identities = 251/290 (86%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 8803350 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 8803409
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgtccttgctttgaaaagaata 129
||||| || ||||||||||| ||||||||| || ||||| |||| |||||||| |||
Sbjct: 8803410 ttcgggacggtttataaacttgcaatggatgacggtaatgtttttgcattgaaaaggata 8803469
Query: 130 gtgaaaacaaatgaagggtctagatcggttctttgatagagaacttgagatattgggaag 189
||||||||||||||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct: 8803470 atgaaaacaaatgaaggg-cttggtcagttctttgatagagaacttgagatactgggaag 8803528
Query: 190 tgttaaacatcgttacttggtcaatcttcgtggttattgcaactctccttcatcaaaact 249
|||||| |||||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||
Sbjct: 8803529 tgttaagcatcgttatttggtcaatctccgtggctattgcaattctccctcatcaaagct 8803588
Query: 250 tttgatatatgattatcttcaaggtggaagcctggatgaagtgctgcatg 299
||||||||||| ||||||| |||||||| ||| ||||| ||||| ||||
Sbjct: 8803589 attgatatatgactatcttccaggtggaaacctagatgaggtgctacatg 8803638
Score = 165 bits (83), Expect = 7e-038
Identities = 164/191 (85%)
Strand = Plus / Plus
Query: 698 gagaaccgggagagggaaatcgtcgatctgaattgtgaaggagtgcacaccgagaccttg 757
||||| |||||||||||||| ||||||| ||||||| |||||||| | |||||||||
Sbjct: 8805315 gagaatcgggagagggaaattgtcgatccatattgtgagggagtgcagattgagaccttg 8805374
Query: 758 gacgctctgctctctctcgccaagcagtgtgtcagctctttgccggaggagcggccgacg 817
|| ||||| || ||||| || || || ||||| || |||||||| ||||||||||| ||
Sbjct: 8805375 gatgctctactttctcttgctaaacaatgtgtaagttctttgccagaggagcggcctaca 8805434
Query: 818 atgcacagggtggtacagatgctggagtcggatgtaattacgccgtgccctagcgacttc 877
||||||||||||||||||||| ||||||||||||||||||| || ||||| || || |||
Sbjct: 8805435 atgcacagggtggtacagatgttggagtcggatgtaattacaccatgccccagtgatttc 8805494
Query: 878 tacgattcaga 888
|||||||||||
Sbjct: 8805495 tacgattcaga 8805505
Score = 147 bits (74), Expect = 2e-032
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 542 ccagagtatatgcagtttggcagagccaccgagaagaccgatgtctacagttttggggtt 601
|||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 8805045 ccagagtatatgcaaagtggcagagccaccgaaaagactgacgtctacagttttggagtt 8805104
Query: 602 ctggtacttgaaatactcagcggaaagcgacctaccgatgcatccttcattgagaaggga 661
|| ||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||
Sbjct: 8805105 ttgctacttgaaatactaagcggaaaacgacctactgatgcatcatttattgaaaaggga 8805164
Query: 662 ttaaacattgttggatgg 679
|| |||||||||||||||
Sbjct: 8805165 ttgaacattgttggatgg 8805182
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 8805555 tttcctgtggaggcacattccatttattctttgcagat 8805592
>gb|AU101989.1|AU101989 AU101989 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4008, mRNA sequence
Length = 428
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 10 aaagacatactcaagaagctagagactatggatgaagaaaatatcattggagcaggaggc 69
||||| || |||||||| |||||||| |||||||| || ||||||||||||| ||| |||
Sbjct: 298 aaagaaatcctcaagaaactagagaccatggatgatgagaatatcattggagtagggggc 357
Query: 70 ttcggaactgtttataaactgcaaatggatgatggcaatgt 110
||||| || ||||||||||| ||||||||| || |||||
Sbjct: 358 ttcgggacggtttataaacttgcaatggatgacggtaatgt 398
>gb|AQ915972.1|AQ915972 nbeb0060P06r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0060P06r, DNA sequence
Length = 453
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 332 catcgtgatgtcaagtcgagcaacatcctccttgac 297
>gb|CB643118.1|CB643118 OSJNEb03K09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03K09 3', mRNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 334 catcgtgatgtcaagtcgagcaacatcctccttgac 369
>dbj|AK100142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011I08, full
insert sequence
Length = 1393
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 310 catcgtgatgtcaagtcgagcaacatcctccttgac 345
>gb|AACV01009793.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009793, whole
genome shotgun sequence
Length = 21723
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 1134 catcgtgatgtcaagtcgagcaacatcctccttgac 1169
>ref|NM_185226.2| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1581
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 955 catcgtgatgtcaagtcgagcaacatcctccttgac 990
>ref|NT_079860.2| Oryza sativa (japonica cultivar-group)
Length = 287644
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 270885 catcgtgatgtcaagtcgagcaacatcctccttgac 270920
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 11100359 catcgtgatgtcaagtcgagcaacatcctccttgac 11100394
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 18447721 catcgtgatgtcaagtcgagcaacatcctccttgac 18447756
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
complete sequence
Length = 163738
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 146972 catcgtgatgtcaagtcgagcaacatcctccttgac 147007
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 401 catcgtgatatcaagtcgagcaacatcttgcttgac 436
||||||||| ||||||||||||||||| | ||||||
Sbjct: 21333498 catcgtgatgtcaagtcgagcaacatcctccttgac 21333533
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0079L11, complete sequence
Length = 124104
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 69529 aagactgatgtctacagttttggggtt 69555
>gb|AACV01010800.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010800, whole
genome shotgun sequence
Length = 44740
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 41290 aagactgatgtctacagttttggggtt 41264
>ref|XM_475552.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1323
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 805 aagactgatgtctacagttttggggtt 831
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 498264 aagactgatgtctacagttttggggtt 498290
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12,
complete sequence
Length = 144455
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 1947 aagactgatgtctacagttttggggtt 1973
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 1415104 aagactgatgtctacagttttggggtt 1415130
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 1415104 aagactgatgtctacagttttggggtt 1415130
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 46.1 bits (23), Expect = 0.043
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 575 aagaccgatgtctacagttttggggtt 601
||||| |||||||||||||||||||||
Sbjct: 1407867 aagactgatgtctacagttttggggtt 1407893
>gb|AU067911.1|AU067911 AU067911 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10858_12Z, mRNA sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.17
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 928 tttcccgtggaggcgcattcc-tttattctttgcagat 964
||||| |||||||| |||||| ||||||||||||||||
Sbjct: 175 tttcctgtggaggcacattccatttattctttgcagat 212
>dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ2096_F11, ***
SEQUENCING IN PROGRESS ***
Length = 139814
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 117803 cgatgtctacagttttggggtt 117782
>dbj|AK069794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030D14, full
insert sequence
Length = 2820
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 1300 cgatgtctacagttttggggtt 1321
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0038F10
Length = 153929
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 94814 cgatgtctacagttttggggtt 94835
>gb|AACV01016272.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016272, whole
genome shotgun sequence
Length = 12514
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 9617 cgatgtctacagttttggggtt 9638
>ref|XM_478196.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2820
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 1300 cgatgtctacagttttggggtt 1321
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 5988394 cgatgtctacagttttggggtt 5988415
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 3974479 cgatgtctacagttttggggtt 3974500
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 17373918 cgatgtctacagttttggggtt 17373939
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 580 cgatgtctacagttttggggtt 601
||||||||||||||||||||||
Sbjct: 18365319 cgatgtctacagttttggggtt 18365340
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,607,117
Number of Sequences: 438736
Number of extensions: 1607117
Number of successful extensions: 8772
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8466
Number of HSP's gapped (non-prelim): 296
length of query: 1164
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1143
effective length of database: 2,791,206,460
effective search space: 3190348983780
effective search space used: 3190348983780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)