BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 359 2e-096
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 359 2e-096
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 359 2e-096
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 359 2e-096
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 331 3e-088
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 331 3e-088
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 331 3e-088
gb|CA754118.1|CA754118 BR040009000_PLATE_F01_6_013.ab1 OA O... 190 8e-046
gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing... 186 1e-044
gb|AU174270.1|AU174270 AU174270 Rice shoot Oryza sativa (ja... 184 5e-044
gb|AU182333.1|AU182333 AU182333 Rice panicle at flowering s... 184 5e-044
gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (j... 178 3e-042
gb|AU030804.1|AU030804 AU030804 Rice cDNA from immature lea... 157 1e-035
gb|AU183251.1|AU183251 AU183251 Rice cDNA from immature lea... 155 4e-035
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 149 3e-033
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 149 3e-033
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 149 3e-033
gb|AU030571.1|AU030571 AU030571 Rice cDNA from immature lea... 119 2e-024
gb|CB683063.1|CB683063 OSJNEf10P16.r OSJNEf Oryza sativa (j... 113 1e-022
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 103 1e-019
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 101 6e-019
gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (j... 96 4e-017
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 96 4e-017
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 96 4e-017
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 96 4e-017
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 96 4e-017
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 96 4e-017
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 96 4e-017
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 96 4e-017
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 96 4e-017
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 90 2e-015
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 90 2e-015
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 90 2e-015
gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (j... 88 9e-015
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 86 3e-014
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 86 3e-014
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|AU070542.1|AU070542 AU070542 Rice shoot Oryza sativa (ja... 68 8e-009
dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA... 68 8e-009
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CB644397.1|CB644397 OSJNEb05J12.r OSJNEb Oryza sativa (j... 64 1e-007
gb|CB648190.1|CB648190 OSJNEb11H13.r OSJNEb Oryza sativa (j... 64 1e-007
gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (j... 64 1e-007
gb|CB650793.1|CB650793 OSJNEb15H04.r OSJNEb Oryza sativa (j... 64 1e-007
gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 64 1e-007
dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (j... 62 5e-007
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) c... 58 8e-006
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 58 8e-006
gb|CB658473.1|CB658473 OSJNEc14I12.r OSJNEc Oryza sativa (j... 56 3e-005
gb|CB636878.1|CB636878 OSJNEa02N14.r OSJNEa Oryza sativa (j... 50 0.002
gb|CB637383.1|CB637383 OSJNEa03O21.r OSJNEa Oryza sativa (j... 50 0.002
gb|CB648710.1|CB648710 OSJNEb12D18.f OSJNEb Oryza sativa (j... 50 0.002
gb|CB651563.1|CB651563 OSJNEb16J04.r OSJNEb Oryza sativa (j... 50 0.002
gb|CB652809.1|CB652809 OSJNEc03D09.r OSJNEc Oryza sativa (j... 50 0.002
gb|CB653528.1|CB653528 OSJNEc04K08.r OSJNEc Oryza sativa (j... 50 0.002
gb|CB662584.1|CB662584 OSJNEd06M04.f OSJNEd Oryza sativa (j... 50 0.002
gb|CB662585.1|CB662585 OSJNEd06M04.r OSJNEd Oryza sativa (j... 50 0.002
gb|CB663458.1|CB663458 OSJNEd08H09.r OSJNEd Oryza sativa (j... 50 0.002
gb|CF308278.1|CF308278 ABF--02-A16.g1 ABF3-overexpressing t... 50 0.002
dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP004784.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AU173330.1|AU173330 AU173330 Rice root Oryza sativa (jap... 48 0.007
gb|AU181176.1|AU181176 AU181176 Rice callus (2001) Oryza sa... 48 0.007
gb|AU184072.1|AU184072 AU184072 Rice root Oryza sativa (jap... 48 0.007
gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (j... 48 0.007
gb|CF304275.1|CF304275 ABF1--04-I16.g1 ABF3-overexpressing ... 48 0.007
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01005665.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01013815.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 48 0.007
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 48 0.007
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 48 0.007
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|CA755259.1|CA755259 BR030016000_PLATE_F01_6_013.ab1 OA O... 46 0.029
gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (j... 46 0.029
dbj|AK061520.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK063778.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK104665.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK105937.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
dbj|AK122186.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.029
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 46 0.029
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 46 0.029
emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC O... 46 0.029
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 46 0.029
gb|AACV01002399.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
gb|AACV01007932.1| Oryza sativa (japonica cultivar-group) c... 46 0.029
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.029
ref|NM_191351.1| Oryza sativa (japonica cultivar-group), p... 46 0.029
ref|XM_469778.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.029
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.029
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 46 0.029
dbj|AP003274.4| Oryza sativa (japonica cultivar-group) geno... 46 0.029
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.029
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.029
gb|CB665122.1|CB665122 OSJNEd11E16.f OSJNEd Oryza sativa (j... 44 0.11
dbj|AP003809.1| Oryza sativa (japonica cultivar-group) chro... 44 0.11
dbj|AP004335.1| Oryza sativa (japonica cultivar-group) chro... 44 0.11
dbj|AP003815.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AK069185.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK108811.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK109047.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AP005157.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC O... 44 0.11
emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC O... 44 0.11
gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 ... 44 0.11
gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 ... 44 0.11
dbj|AP005841.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|AACV01002130.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01004443.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01007964.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01016333.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01017772.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01023987.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|NM_192105.1| Oryza sativa (japonica cultivar-group), p... 44 0.11
ref|XM_465919.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_469864.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_478332.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_481060.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.11
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.11
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.11
dbj|AP003455.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|CL423981.1|CL423981 ALE267_TT63-96-1 CSIROPIFGRTT_BDTDNA... 42 0.45
gb|AU083388.1|AU083388 AU083388 Rice callus Oryza sativa (j... 42 0.45
gb|AU083390.1|AU083390 AU083390 Rice callus Oryza sativa (j... 42 0.45
gb|AU083391.1|AU083391 AU083391 Rice callus Oryza sativa (j... 42 0.45
gb|AU166809.1|AU166809 AU166809 Rice callus (2001) Oryza sa... 42 0.45
gb|AU181348.1|AU181348 AU181348 Rice callus (2001) Oryza sa... 42 0.45
gb|AU181654.1|AU181654 AU181654 Rice callus (2001) Oryza sa... 42 0.45
gb|AU181675.1|AU181675 AU181675 Rice callus (2001) Oryza sa... 42 0.45
gb|AU181807.1|AU181807 AU181807 Rice callus (2001) Oryza sa... 42 0.45
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 42 0.45
dbj|AP003978.1| Oryza sativa (japonica cultivar-group) chro... 42 0.45
dbj|AP004186.1| Oryza sativa (japonica cultivar-group) chro... 42 0.45
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
dbj|AK100515.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
dbj|AK107521.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
dbj|AK111775.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.45
gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.45
gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 ... 42 0.45
gb|AC119796.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 ... 42 0.45
emb|AJ575219.1|OSA575219 Oryza sativa (japonica cultivar-gr... 42 0.45
dbj|AP004801.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 42 0.45
ref|NT_107116.1| Oryza sativa (japonica cultivar-group) 42 0.45
dbj|AP005753.2| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP005722.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP005393.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP005559.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AACV01000871.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01003745.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01006092.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01008204.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01010482.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01012070.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
gb|AACV01016962.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NM_183713.1| Oryza sativa (japonica cultivar-group), p... 42 0.45
ref|XM_470159.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.45
ref|XM_470203.1| Oryza sativa (japonica cultivar-group), p... 42 0.45
ref|XM_473888.1| Oryza sativa (japonica cultivar-group), p... 42 0.45
ref|XM_475190.1| Oryza sativa (japonica cultivar-group), p... 42 0.45
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.45
ref|XM_479416.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.45
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 0.45
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 42 0.45
dbj|AP004378.5| Oryza sativa (japonica cultivar-group) geno... 42 0.45
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 42 0.45
gb|AC105258.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromoso... 42 0.45
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AC138197.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
insert sequence
Length = 1253
Score = 359 bits (181), Expect = 2e-096
Identities = 346/400 (86%), Gaps = 1/400 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 589 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 648
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 649 gaggctctactccagcctgtggaacgccgacgactgggcgacgcagggtggacgcgtcaa 708
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||| | ||||| |||||||| |||||||||||||| ||| |||||||| ||
Sbjct: 709 gacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctg 768
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcaccgg 239
| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 769 cgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgcacc 828
Query: 240 cgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcaccct 299
|| | ||| | ||||||||| |||||| | ||||||||||||||||| |||||||| |
Sbjct: 829 cggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcg 888
Query: 300 gcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccc 359
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 889 gcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcc 948
Query: 360 caagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||| || |||||| ||||||||||||||||||||
Sbjct: 949 caagcgcttcccccagggcgtccccgccgagtgctccatg 988
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 359 bits (181), Expect = 2e-096
Identities = 346/400 (86%), Gaps = 1/400 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 6238953 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 6238894
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 6238893 gaggctctactccagcctgtggaacgccgacgactgggcgacgcagggtggacgcgtcaa 6238834
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||| | ||||| |||||||| |||||||||||||| ||| |||||||| ||
Sbjct: 6238833 gacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctg 6238774
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcaccgg 239
| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 6238773 cgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgcacc 6238714
Query: 240 cgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcaccct 299
|| | ||| | ||||||||| |||||| | ||||||||||||||||| |||||||| |
Sbjct: 6238713 cggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcg 6238654
Query: 300 gcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccc 359
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 6238653 gcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcc 6238594
Query: 360 caagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||| || |||||| ||||||||||||||||||||
Sbjct: 6238593 caagcgcttcccccagggcgtccccgccgagtgctccatg 6238554
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 6215809 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 6215868
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 6215869 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 6215928
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 6215929 ttccgcgacttcaacgccgacgc 6215951
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 6220779 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 6220829
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 6216091 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 6216150
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 6216151 ggcacccccgccgagtgc 6216168
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 6227892 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 6227951
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 6227952 tgaggacggactggtc 6227967
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 359 bits (181), Expect = 2e-096
Identities = 346/400 (86%), Gaps = 1/400 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 81243 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 81184
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 81183 gaggctctactccagcctgtggaacgccgacgactgggcgacgcagggtggacgcgtcaa 81124
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||| | ||||| |||||||| |||||||||||||| ||| |||||||| ||
Sbjct: 81123 gacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctg 81064
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcaccgg 239
| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 81063 cgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgcacc 81004
Query: 240 cgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcaccct 299
|| | ||| | ||||||||| |||||| | ||||||||||||||||| |||||||| |
Sbjct: 81003 cggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcg 80944
Query: 300 gcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccc 359
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 80943 gcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcc 80884
Query: 360 caagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||| || |||||| ||||||||||||||||||||
Sbjct: 80883 caagcgcttcccccagggcgtccccgccgagtgctccatg 80844
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 58099 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 58158
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 58159 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 58218
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 58219 ttccgcgacttcaacgccgacgc 58241
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 63069 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 63119
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 58381 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 58440
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 58441 ggcacccccgccgagtgc 58458
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 70182 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 70241
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 70242 tgaggacggactggtc 70257
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 359 bits (181), Expect = 2e-096
Identities = 346/400 (86%), Gaps = 1/400 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 28773468 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 28773409
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 28773408 gaggctctactccagcctgtggaacgccgacgactgggcgacgcagggtggacgcgtcaa 28773349
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||| | ||||| |||||||| |||||||||||||| ||| |||||||| ||
Sbjct: 28773348 gacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctg 28773289
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcaccgg 239
| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 28773288 cgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgcacc 28773229
Query: 240 cgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcaccct 299
|| | ||| | ||||||||| |||||| | ||||||||||||||||| |||||||| |
Sbjct: 28773228 cggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcg 28773169
Query: 300 gcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccc 359
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 28773168 gcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcc 28773109
Query: 360 caagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||| || |||||| ||||||||||||||||||||
Sbjct: 28773108 caagcgcttcccccagggcgtccccgccgagtgctccatg 28773069
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 28750324 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 28750383
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 28750384 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 28750443
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 28750444 ttccgcgacttcaacgccgacgc 28750466
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 28755294 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 28755344
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 28750606 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 28750665
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 28750666 ggcacccccgccgagtgc 28750683
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 28762407 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 28762466
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 28762467 tgaggacggactggtc 28762482
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 86 gcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||| || ||||| |||||||| || ||||||||||||||||||
Sbjct: 13232706 gcggaggattgggccacgcagggtggccgcgtcaagacggactgg 13232750
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 331 bits (167), Expect = 3e-088
Identities = 346/402 (86%), Gaps = 3/402 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagcc-ga 59
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||| ||
Sbjct: 22860 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagcccga 22919
Query: 60 tgcggctctactccagcctgttgaacgcggacgact-gggcgacgcagggcgggcgcgtc 118
|| |||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||
Sbjct: 22920 tgaggctctactccagcctgtggaacgccgacgactcgggcgacgcagggtggacgcgtc 22979
Query: 119 aagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgct 178
|||||||||||| | ||||| |||||||| |||||||||||||| ||| ||||||||
Sbjct: 22980 aagacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcc 23039
Query: 179 tgcnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcacc 237
||| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 23040 tgcgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgca 23099
Query: 238 ggcgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcacc 297
|| | ||| | ||||||||| |||||| | ||||||||||||||||| ||||||||
Sbjct: 23100 cccggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacg 23159
Query: 298 ctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgac 357
| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 23160 cggcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgat 23219
Query: 358 cccaagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||||| || |||||| ||||||||||||||||||||
Sbjct: 23220 cccaagcgcttcccccagggcgtccccgccgagtgctccatg 23261
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Minus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 46009 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 45950
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 45949 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 45890
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 45889 ttccgcgacttcaacgccgacgc 45867
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 41039 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 40989
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 45727 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 45668
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 45667 ggcacccccgccgagtgc 45650
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 33926 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 33867
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 33866 tgaggacggactggtc 33851
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 331 bits (167), Expect = 3e-088
Identities = 346/402 (86%), Gaps = 3/402 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagcc-ga 59
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||| ||
Sbjct: 10151791 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagcccga 10151732
Query: 60 tgcggctctactccagcctgttgaacgcggacgact-gggcgacgcagggcgggcgcgtc 118
|| |||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||
Sbjct: 10151731 tgaggctctactccagcctgtggaacgccgacgactcgggcgacgcagggtggacgcgtc 10151672
Query: 119 aagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgct 178
|||||||||||| | ||||| |||||||| |||||||||||||| ||| ||||||||
Sbjct: 10151671 aagacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcc 10151612
Query: 179 tgcnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcacc 237
||| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 10151611 tgcgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgca 10151552
Query: 238 ggcgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcacc 297
|| | ||| | ||||||||| |||||| | ||||||||||||||||| ||||||||
Sbjct: 10151551 cccggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacg 10151492
Query: 298 ctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgac 357
| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10151491 cggcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgat 10151432
Query: 358 cccaagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||||| || |||||| ||||||||||||||||||||
Sbjct: 10151431 cccaagcgcttcccccagggcgtccccgccgagtgctccatg 10151390
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 10128642 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 10128701
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 10128702 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 10128761
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 10128762 ttccgcgacttcaacgccgacgc 10128784
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 10133612 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 10133662
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 10128924 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 10128983
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 10128984 ggcacccccgccgagtgc 10129001
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 10140725 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 10140784
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 10140785 tgaggacggactggtc 10140800
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 331 bits (167), Expect = 3e-088
Identities = 346/402 (86%), Gaps = 3/402 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagcc-ga 59
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||| ||
Sbjct: 27850528 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagcccga 27850469
Query: 60 tgcggctctactccagcctgttgaacgcggacgact-gggcgacgcagggcgggcgcgtc 118
|| |||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||
Sbjct: 27850468 tgaggctctactccagcctgtggaacgccgacgactcgggcgacgcagggtggacgcgtc 27850409
Query: 119 aagacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgct 178
|||||||||||| | ||||| |||||||| |||||||||||||| ||| ||||||||
Sbjct: 27850408 aagacggactggacgcacgcgcccttctcggcctcctaccgcggcttccgcgccgacgcc 27850349
Query: 179 tgcnt-gccgtcgcgggcggccggacccgctgcggcgccaccgtcggcaccgagggcacc 237
||| | | || ||| || ||||| || |||||||||||||||||||||||||| | | |
Sbjct: 27850348 tgcgtcgtcgccgccggtggccgcacgcgctgcggcgccaccgtcggcaccgacgccgca 27850289
Query: 238 ggcgcccccgcctccgccgccggcgccggggactggtacaaccaggagctggacctcacc 297
|| | ||| | ||||||||| |||||| | ||||||||||||||||| ||||||||
Sbjct: 27850288 cccggcaccggcgccgccgccgccgccggtggatggtacaaccaggagctcgacctcacg 27850229
Query: 298 ctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgac 357
| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 27850228 cggcagcagcggatgcggtgggtgcagagcaagtacatgatctacaactactgcaccgat 27850169
Query: 358 cccaagcgctaccagcagggcctccccgccgagtgctccatg 399
|||||||||| || |||||| ||||||||||||||||||||
Sbjct: 27850168 cccaagcgcttcccccagggcgtccccgccgagtgctccatg 27850127
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 27827379 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 27827438
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 27827439 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 27827498
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 27827499 ttccgcgacttcaacgccgacgc 27827521
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 27832349 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 27832399
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 27827661 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 27827720
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 27827721 ggcacccccgccgagtgc 27827738
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 27839462 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 27839521
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 27839522 tgaggacggactggtc 27839537
Score = 48.1 bits (24), Expect = 0.007
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||| |||||||| || ||||||||||||||||||
Sbjct: 12969932 tgggccacgcagggtggccgcgtcaagacggactgg 12969967
>gb|CA754118.1|CA754118 BR040009000_PLATE_F01_6_013.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040009000_PLATE_F01_6_013.ab1 similar to xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) - barley, mRNA
sequence
Length = 635
Score = 190 bits (96), Expect = 8e-046
Identities = 168/192 (87%)
Strand = Plus / Plus
Query: 208 tgcggcgccaccgtcggcaccgagggcaccggcgcccccgcctccgccgccggcgccggg 267
||||||||||||||||||||||| | | | || | ||| | ||||||||| ||||||
Sbjct: 1 tgcggcgccaccgtcggcaccgacgccgcacccggcaccggcgccgccgccgccgccggt 60
Query: 268 gactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgc 327
| ||||||||||||||||| |||||||| | ||||||||||||||| ||||||||| ||
Sbjct: 61 ggatggtacaaccaggagctcgacctcacgcggcagcagcggatgcggtgggtgcagagc 120
Query: 328 aagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgcc 387
||||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||
Sbjct: 121 aagtacatgatctacaactactgcaccgatcccaagcgcttcccccagggcgtccccgcc 180
Query: 388 gagtgctccatg 399
||||||||||||
Sbjct: 181 gagtgctccatg 192
>gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-C17, mRNA sequence
Length = 475
Score = 186 bits (94), Expect = 1e-044
Identities = 145/162 (89%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 305 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 364
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 365 gaggctctactccagcctgtggaacgccgacgactgggcgacgcagggtggacgcgtcaa 424
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgg 162
|||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 425 gacggactggacgcacgcgcccttctcggcctcctaccgcgg 466
>gb|AU174270.1|AU174270 AU174270 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2904, mRNA sequence
Length = 448
Score = 184 bits (93), Expect = 5e-044
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 251 ccgccgccggcgccggggactggtacaaccaggagctggacctcaccctgcagcagcgga 310
||||||||| |||||| | ||||||||||||||||| |||||||| | |||||||||||
Sbjct: 5 ccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcggcagcagcgga 64
Query: 311 tgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacc 370
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 65 tgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcccaagcgcttcc 124
Query: 371 agcagggcctccccgccgagtgctccatg 399
|||||| ||||||||||||||||||||
Sbjct: 125 cccagggcgtccccgccgagtgctccatg 153
>gb|AU182333.1|AU182333 AU182333 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2104, mRNA sequence
Length = 464
Score = 184 bits (93), Expect = 5e-044
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 251 ccgccgccggcgccggggactggtacaaccaggagctggacctcaccctgcagcagcgga 310
||||||||| |||||| | ||||||||||||||||| |||||||| | |||||||||||
Sbjct: 34 ccgccgccgccgccggtggatggtacaaccaggagctcgacctcacgcggcagcagcgga 93
Query: 311 tgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacc 370
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 94 tgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcccaagcgcttcc 153
Query: 371 agcagggcctccccgccgagtgctccatg 399
|||||| ||||||||||||||||||||
Sbjct: 154 cccagggcgtccccgccgagtgctccatg 182
>gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05G07 5', mRNA sequence
Length = 753
Score = 178 bits (90), Expect = 3e-042
Identities = 144/162 (88%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 580 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 639
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
| |||||||||||||||||| |||||| ||||||||||||||||| || || ||||||||
Sbjct: 640 gaggctctactccagcctgtggaacgccgacgactgggcgacgcatggtggacgcgtcaa 699
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgg 162
|||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 700 gacggactggacgcacgcgcccttctcggcctcctaccgcgg 741
>gb|AU030804.1|AU030804 AU030804 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60267_2Z, mRNA sequence
Length = 663
Score = 157 bits (79), Expect = 1e-035
Identities = 132/149 (88%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 251 ccgccgccggcgccggggactggtacaaccaggagctggacctcaccctgcagcagcgga 310
||||||||| |||||| ||||||||||||||||| |||||||| | ||||| ||||
Sbjct: 214 ccgccgccgccgccggtngatggtacaaccaggagctcgacctcacgcggcagcn-cgga 272
Query: 311 tgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacc 370
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 273 tgcggtgggtgcagagcaagtacatgatctacaactactgcaccgatcccaagcgcttcc 332
Query: 371 agcagggcctccccgccgagtgctccatg 399
|||||| ||||||||||||||||||||
Sbjct: 333 cccagggcgtccccgccgagtgctccatg 361
Score = 44.1 bits (22), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 205 cgctgcggcgccaccgtcggcaccg 229
||||||||||| |||||||||||||
Sbjct: 168 cgctgcggcgcnaccgtcggcaccg 192
>gb|AU183251.1|AU183251 AU183251 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60366, mRNA sequence
Length = 441
Score = 155 bits (78), Expect = 4e-035
Identities = 117/129 (90%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 271 tggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgcaag 330
||||||||||||||||| |||||||| | |||||| ||||| || ||||||||| |||||
Sbjct: 12 tggtacaaccaggagctcgacctcacgcggcagca-cggatncggtgggtgcagagcaag 70
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||
Sbjct: 71 tacatgatctacaactactgcaccgatcccaagcgcttcccccagggcgtccccgccgag 130
Query: 391 tgctccatg 399
|||||||||
Sbjct: 131 tgctccatg 139
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
insert sequence
Length = 1208
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 616 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 675
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 676 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 735
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 736 ttccgcgacttcaacgccgacgc 758
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 898 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 957
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 958 ggcacccccgccgagtgc 975
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
insert sequence
Length = 1208
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 616 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 675
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 676 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 735
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 736 ttccgcgacttcaacgccgacgc 758
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 898 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 957
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 958 ggcacccccgccgagtgc 975
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 149 bits (75), Expect = 3e-033
Identities = 126/143 (88%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 150890 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 150949
Query: 95 tgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcctcc 154
||||||||||||||||| ||||||||| |||||||| | | ||||||||| |||||||
Sbjct: 150950 tgggcgacgcagggcggccgcgtcaaggcggactggagcaaggcccccttcgtcgcctcc 151009
Query: 155 taccgcgggttcaaggccgacgc 177
| ||||| ||||| ||||||||
Sbjct: 151010 ttccgcgacttcaacgccgacgc 151032
Score = 77.8 bits (39), Expect = 8e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 155860 gaacgcggaggagtgggcgacgcagggcggccgcgtcaagacggactggtc 155910
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 151172 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 151231
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 151232 ggcacccccgccgagtgc 151249
Score = 63.9 bits (32), Expect = 1e-007
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||| | ||| | ||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 162973 cgatgcgggtgtacgcgagcctgtgggacgcggaggagtgggcgacgcagggggggcgcg 163032
Query: 117 tcaagacggactggtc 132
| | ||||||||||||
Sbjct: 163033 tgaggacggactggtc 163048
>gb|AU030571.1|AU030571 AU030571 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51257_2Z, mRNA sequence
Length = 405
Score = 119 bits (60), Expect = 2e-024
Identities = 99/111 (89%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 289 gacctcaccctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaactac 348
|||||||| | ||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct: 5 gacctcacgcggcagcagcggatgcggtgggtgcagagcaagtatatgatctacaactac 64
Query: 349 tgcaccgaccccaagcgctaccagcagggcctccccgccgagtgctccatg 399
||| |||| |||||||||| || || ||| ||||||||||||||||||||
Sbjct: 65 tgcnccgatcccaagcgcttccccca-ggcgtccccgccgagtgctccatg 114
>gb|CB683063.1|CB683063 OSJNEf10P16.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P16 3', mRNA sequence
Length = 297
Score = 113 bits (57), Expect = 1e-022
Identities = 111/129 (86%)
Strand = Plus / Minus
Query: 271 tggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgcaag 330
||||||||||||||| | |||||||| | ||| ||||||||||| |||||||| |||||
Sbjct: 256 tggtacaaccaggagtttgacctcacgcggcaccagcggatgcggtgggtgcaaagcaag 197
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||||| | |||||||||| |||| |||||||| | || |||||| ||||| |||||
Sbjct: 196 tacatgatttccaactactgccccgatcccaagcgtttcccccagggcgtcccccccgag 137
Query: 391 tgctccatg 399
|||||||||
Sbjct: 136 tgctccatg 128
>gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5538, mRNA sequence
Length = 385
Score = 103 bits (52), Expect = 1e-019
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 314 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 373
Query: 95 tgggcgacgcag 106
||||||||||||
Sbjct: 374 tgggcgacgcag 385
>gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5527, mRNA sequence
Length = 367
Score = 101 bits (51), Expect = 6e-019
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 35 gtggcgttccccaagagccagccgatgcggctctactccagcctgttgaacgcggacgac 94
|||||||||||||||||||||||||||||| | ||| | ||||||| |||||||||||||
Sbjct: 297 gtggcgttccccaagagccagccgatgcgggtgtacgcgagcctgtggaacgcggacgac 356
Query: 95 tgggcgacgca 105
|||||||||||
Sbjct: 357 tgggcgacgca 367
>gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11264_12Z, mRNA sequence
Length = 636
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 116 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 175
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 176 cgcgtcaagacggactggtc 195
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 326 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 385
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 386 tgctccatgccgtag 400
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full
insert sequence
Length = 1109
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 628 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 687
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 688 cgcgtcaagacggactggtc 707
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 838 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 897
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 898 tgctccatgccgtag 912
>gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010435, whole
genome shotgun sequence
Length = 5289
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 4868 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 4927
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 4928 cgcgtcaagacggactggtc 4947
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 5078 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 5137
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 5138 tgctccatgccgtag 5152
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 822
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 538 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 597
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 598 cgcgtcaagacggactggtc 617
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 748 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 807
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 808 tgctccatgccgtag 822
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 413172 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 413113
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 413112 cgcgtcaagacggactggtc 413093
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 327 caagtacatgatctacaactactgcaccgacccc 360
|||||||||||||||||||||||||| |||||||
Sbjct: 404322 caagtacatgatctacaactactgcaacgacccc 404289
Score = 58.0 bits (29), Expect = 8e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 74 agcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||||| || |||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 450339 agcctgtggagcgcggaggactgggcgacgcaggggggccgggtcaagaccgactgg 450395
Score = 52.0 bits (26), Expect = 5e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 75 gcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||| | |||| ||||||||||||||| |||| || ||| ||||||| ||||||||
Sbjct: 404542 gcctgtgggacgccgacgactgggcgacggagggtggccgcatcaagaccgactggtc 404485
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 412962 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 412903
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 412902 tgctccatgccgtag 412888
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 8235261 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 8235202
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 8235201 cgcgtcaagacggactggtc 8235182
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 9886768 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 9886824
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 327 caagtacatgatctacaactactgcaccgacccc 360
|||||||||||||||||||||||||| |||||||
Sbjct: 8226319 caagtacatgatctacaactactgcaacgacccc 8226286
Score = 58.0 bits (29), Expect = 8e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 74 agcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||||| || |||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 8269869 agcctgtggagcgcggaggactgggcgacgcaggggggccgggtcaagaccgactgg 8269925
Score = 52.0 bits (26), Expect = 5e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 75 gcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||| | |||| ||||||||||||||| |||| || ||| ||||||| ||||||||
Sbjct: 8226539 gcctgtgggacgccgacgactgggcgacggagggtggccgcatcaagaccgactggtc 8226482
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 8235051 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 8234992
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 8234991 tgctccatgccgtag 8234977
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 245 ccgcctccgccgccggcgccggggactgg 273
|||||||||||||||||||| ||| ||||
Sbjct: 8976853 ccgcctccgccgccggcgcctggggctgg 8976825
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 27379360 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 27379301
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 27379300 cgcgtcaagacggactggtc 27379281
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 29030867 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 29030923
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 327 caagtacatgatctacaactactgcaccgacccc 360
|||||||||||||||||||||||||| |||||||
Sbjct: 27370418 caagtacatgatctacaactactgcaacgacccc 27370385
Score = 58.0 bits (29), Expect = 8e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 74 agcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||||| || |||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 27413968 agcctgtggagcgcggaggactgggcgacgcaggggggccgggtcaagaccgactgg 27414024
Score = 52.0 bits (26), Expect = 5e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 75 gcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||| | |||| ||||||||||||||| |||| || ||| ||||||| ||||||||
Sbjct: 27370638 gcctgtgggacgccgacgactgggcgacggagggtggccgcatcaagaccgactggtc 27370581
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 27379150 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 27379091
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 27379090 tgctccatgccgtag 27379076
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 245 ccgcctccgccgccggcgccggggactgg 273
|||||||||||||||||||| ||| ||||
Sbjct: 28120952 ccgcctccgccgccggcgcctggggctgg 28120924
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
complete sequence
Length = 166804
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 150039 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 149980
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 149979 cgcgtcaagacggactggtc 149960
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 327 caagtacatgatctacaactactgcaccgacccc 360
|||||||||||||||||||||||||| |||||||
Sbjct: 141189 caagtacatgatctacaactactgcaacgacccc 141156
Score = 52.0 bits (26), Expect = 5e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 75 gcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||| | |||| ||||||||||||||| |||| || ||| ||||||| ||||||||
Sbjct: 141409 gcctgtgggacgccgacgactgggcgacggagggtggccgcatcaagaccgactggtc 141352
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 149829 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 149770
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 149769 tgctccatgccgtag 149755
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 95.6 bits (48), Expect = 4e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||| ||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 30516662 cagcggatgcggctgtacgggagcctgtggaacgccgacgactgggccacgcagggcggg 30516603
Query: 113 cgcgtcaagacggactggtc 132
||||||||||||||||||||
Sbjct: 30516602 cgcgtcaagacggactggtc 30516583
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 32180771 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 32180827
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 327 caagtacatgatctacaactactgcaccgacccc 360
|||||||||||||||||||||||||| |||||||
Sbjct: 30507812 caagtacatgatctacaactactgcaacgacccc 30507779
Score = 58.0 bits (29), Expect = 8e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 74 agcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
||||||| || |||||| ||||||||||||||||| || || |||||||| ||||||
Sbjct: 30553832 agcctgtggagcgcggaggactgggcgacgcaggggggccgggtcaagaccgactgg 30553888
Score = 52.0 bits (26), Expect = 5e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 75 gcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||| | |||| ||||||||||||||| |||| || ||| ||||||| ||||||||
Sbjct: 30508032 gcctgtgggacgccgacgactgggcgacggagggtggccgcatcaagaccgactggtc 30507975
Score = 46.1 bits (23), Expect = 0.029
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 331 tacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctccccgccgag 390
|||||| | ||| |||||||| ||||| |||||| | || ||||||| |||| |||||
Sbjct: 30516452 tacatggtgtacgactactgcgccgacagcaagcggttcccgcagggcttcccgcccgag 30516393
Query: 391 tgctccatgcagtag 405
|||||||||| ||||
Sbjct: 30516392 tgctccatgccgtag 30516378
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 245 ccgcctccgccgccggcgccggggactgg 273
|||||||||||||||||||| ||| ||||
Sbjct: 31283272 ccgcctccgccgccggcgcctggggctgg 31283244
>dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C07, full
insert sequence
Length = 1279
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 686 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 742
>dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024P08, full
insert sequence
Length = 1199
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 682 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 738
>gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010531, whole
genome shotgun sequence
Length = 30800
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 13237 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 13293
>ref|NT_107200.1| Oryza sativa (japonica cultivar-group)
Length = 1324591
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 999249 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 999305
Score = 42.1 bits (21), Expect = 0.45
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 245 ccgcctccgccgccggcgccggggactgg 273
|||||||||||||||||||| ||| ||||
Sbjct: 104874 ccgcctccgccgccggcgcctggggctgg 104846
>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13,
complete sequence
Length = 127135
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct: 76460 gaacgcggacgactgggcgacgcagggcgggcgggtgaagacggactggtcgcacgc 76516
>gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P16 5', mRNA sequence
Length = 669
Score = 87.7 bits (44), Expect = 9e-015
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||| | ||||||||| | |||||| | |||||||| |||| |||||||||
Sbjct: 586 gatcagggacttcaggaacctggaggggaaggggatcgcgttcccgaagaaccagccgat 645
Query: 61 gcggctctactccagcctgt 80
| ||||||||||||||||||
Sbjct: 646 gaggctctactccagcctgt 665
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 118627 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 118568
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 118567 ggaggcacccttcttcgcctactaccg 118541
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 323 agcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctcc 382
||||||| |||||| ||||||||||||| ||||| | ||||| || |||||| |||
Sbjct: 62714 agcgcaactacatgtcctacaactactgcgccgacggctggcgcttcccccagggcttcc 62773
Query: 383 ccgccgagtgct 394
||||||||||||
Sbjct: 62774 ccgccgagtgct 62785
>gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017696, whole
genome shotgun sequence
Length = 20538
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 2698 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 2639
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 2638 ggaggcacccttcttcgcctactaccg 2612
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 906
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 615 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 674
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 675 ggaggcacccttcttcgcctactaccg 701
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 8146044 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 8145985
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 8145984 ggaggcacccttcttcgcctactaccg 8145958
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 323 agcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctcc 382
||||||| |||||| ||||||||||||| ||||| | ||||| || |||||| |||
Sbjct: 8090131 agcgcaactacatgtcctacaactactgcgccgacggctggcgcttcccccagggcttcc 8090190
Query: 383 ccgccgagtgct 394
||||||||||||
Sbjct: 8090191 ccgccgagtgct 8090202
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 234 caccggcgcccccgcctccgccgccg 259
|||||||||| |||||||||||||||
Sbjct: 9300552 caccggcgcctccgcctccgccgccg 9300527
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 133702 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 133643
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 133642 ggaggcacccttcttcgcctactaccg 133616
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 234 caccggcgcccccgcctccgccgccg 259
|||||||||| |||||||||||||||
Sbjct: 1379297 caccggcgcctccgcctccgccgccg 1379272
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 7735708 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 7735649
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 7735648 ggaggcacccttcttcgcctactaccg 7735622
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 234 caccggcgcccccgcctccgccgccg 259
|||||||||| |||||||||||||||
Sbjct: 8981303 caccggcgcctccgcctccgccgccg 8981278
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 85.7 bits (43), Expect = 3e-014
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 73 cagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtc 132
|||||||| |||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 8378518 cagcctgtggaacgccgacgactgggcgacgcagggcgggagggtgaagacggactggtc 8378459
Query: 133 ccacgcccccttctccgcctcctaccg 159
| || ||||||| ||||| ||||||
Sbjct: 8378458 ggaggcacccttcttcgcctactaccg 8378432
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 323 agcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctcc 382
||||||| |||||| ||||||||||||| ||||| | ||||| || |||||| |||
Sbjct: 8322605 agcgcaactacatgtcctacaactactgcgccgacggctggcgcttcccccagggcttcc 8322664
Query: 383 ccgccgagtgct 394
||||||||||||
Sbjct: 8322665 ccgccgagtgct 8322676
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 234 caccggcgcccccgcctccgccgccg 259
|||||||||| |||||||||||||||
Sbjct: 9533026 caccggcgcctccgcctccgccgccg 9533001
>gb|AU070542.1|AU070542 AU070542 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2643_22A, mRNA sequence
Length = 291
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 178 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 237
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 238 ggcacccccgccgagtgc 255
>dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E08, full
insert sequence
Length = 634
Score = 67.9 bits (34), Expect = 8e-009
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcag 375
||||||||| | |||| ||||||||||||||||||||| ||| ||||||| | || |||
Sbjct: 324 tgggtgcagaggaagttcatgatctacaactactgcactgacgccaagcggttcccccag 383
Query: 376 ggcctccccgccgagtgc 393
||| |||||||||||||
Sbjct: 384 ggcacccccgccgagtgc 401
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full
insert sequence
Length = 1053
Score = 65.9 bits (33), Expect = 3e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 52 ccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgg 111
|||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||
Sbjct: 585 ccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgg 644
Query: 112 gcgcgtcaagacggactggtc 132
||| | ||||| ||||||||
Sbjct: 645 gcgggagaagaccgactggtc 665
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full
insert sequence
Length = 977
Score = 65.9 bits (33), Expect = 3e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 52 ccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgg 111
|||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||
Sbjct: 588 ccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgg 647
Query: 112 gcgcgtcaagacggactggtc 132
||| | ||||| ||||||||
Sbjct: 648 gcgggagaagaccgactggtc 668
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0007D07, complete sequence
Length = 133930
Score = 65.9 bits (33), Expect = 3e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 52 ccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgg 111
|||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||
Sbjct: 15072 ccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgg 15131
Query: 112 gcgcgtcaagacggactggtc 132
||| | ||||| ||||||||
Sbjct: 15132 gcgggagaagaccgactggtc 15152
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
complete sequence
Length = 148829
Score = 65.9 bits (33), Expect = 3e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 52 ccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgg 111
|||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||
Sbjct: 115453 ccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgg 115512
Query: 112 gcgcgtcaagacggactggtc 132
||| | ||||| ||||||||
Sbjct: 115513 gcgggagaagaccgactggtc 115533
>ref|NT_107129.1| Oryza sativa (japonica cultivar-group)
Length = 234310
Score = 65.9 bits (33), Expect = 3e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 52 ccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgg 111
|||||||||| ||||||||||||||||| |||||| ||||||||||| || | |||||
Sbjct: 115453 ccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgg 115512
Query: 112 gcgcgtcaagacggactggtc 132
||| | ||||| ||||||||
Sbjct: 115513 gcgggagaagaccgactggtc 115533
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,286,962
Number of Sequences: 438736
Number of extensions: 1286962
Number of successful extensions: 30049
Number of sequences better than 0.5: 228
Number of HSP's better than 0.5 without gapping: 251
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 25644
Number of HSP's gapped (non-prelim): 4385
length of query: 800
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 779
effective length of database: 2,791,206,460
effective search space: 2174349832340
effective search space used: 2174349832340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)