BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405087.2.1
(737 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA... 591 e-166
dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA... 591 e-166
dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA... 591 e-166
ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA 591 e-166
ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-... 591 e-166
ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-... 591 e-166
dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA... 583 e-164
dbj|AP004066.2| Oryza sativa (japonica cultivar-group) geno... 460 e-127
gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) c... 460 e-127
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 460 e-127
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 460 e-127
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 460 e-127
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 460 e-127
gb|AQ689876.1|AQ689876 nbxb0080D20f CUGI Rice BAC Library O... 218 3e-054
gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germinati... 212 2e-052
gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (j... 212 2e-052
dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA... 176 1e-041
gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germinati... 145 4e-032
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 145 4e-032
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
dbj|AP003568.3| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) c... 145 4e-032
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 145 4e-032
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 145 4e-032
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 145 4e-032
gb|CB641944.1|CB641944 OSJNEb01N18.f OSJNEb Oryza sativa (j... 139 2e-030
gb|CB683436.1|CB683436 OSJNEf11M21.r OSJNEf Oryza sativa (j... 101 5e-019
gb|CB683879.1|CB683879 OSJNEf12N22.f OSJNEf Oryza sativa (j... 94 1e-016
gb|AZ046238.1|AZ046238 nbeb0091B05r CUGI Rice BAC Library (... 92 5e-016
gb|CA999246.1|CA999246 S234P_C03 Rice cold stress germinati... 54 1e-004
gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (j... 54 1e-004
dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
dbj|AP004041.2| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|BA000044.2| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 54 1e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|AY360393.2| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|AQ843521.1|AQ843521 nbxb0020K24f CUGI Rice BAC Library O... 52 4e-004
>dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D12, full
insert sequence
Length = 2711
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 782 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 841
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 842 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 901
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 902 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 958
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 959 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 1018
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 1019 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 1078
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 1079 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 1138
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 1139 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 1198
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1199 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 1258
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 1259 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 1318
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 1319 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 1378
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1379 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 1438
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 1439 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 1498
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 1499 tcccaggcactaaggt 1514
>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full
insert sequence
Length = 3326
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2010 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 2069
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2070 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2129
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2130 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2186
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2187 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2246
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2247 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2306
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2307 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2366
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2367 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2426
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2427 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2486
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2487 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2546
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2547 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2606
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2607 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2666
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2667 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2726
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2727 tcccaggcactaaggt 2742
>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full
insert sequence
Length = 3489
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2044 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 2103
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2104 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2163
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2164 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2220
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2221 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2280
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2281 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2340
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2341 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2400
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2401 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2460
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2461 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2520
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2521 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2580
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2581 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2640
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2641 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2700
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2701 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2760
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2761 tcccaggcactaaggt 2776
>ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3259
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1983 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 2042
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2043 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2102
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2103 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2159
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2160 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2219
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2220 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2279
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2280 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2339
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2340 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2399
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2400 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2459
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2460 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2519
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2520 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2579
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2580 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2639
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2640 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2699
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2700 tcccaggcactaaggt 2715
>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3490
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2045 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 2104
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2105 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2164
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2165 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2221
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2222 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2281
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2282 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2341
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2342 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2401
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2402 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2461
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2462 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2521
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2522 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2581
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2582 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2641
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2642 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2701
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2702 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2761
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2762 tcccaggcactaaggt 2777
>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3327
Score = 591 bits (298), Expect = e-166
Identities = 627/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 2011 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 2070
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2071 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2130
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2131 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2187
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2188 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2247
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2248 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2307
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2308 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2367
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2368 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2427
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2428 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2487
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2488 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2547
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2548 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2607
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2608 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2667
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2668 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2727
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2728 tcccaggcactaaggt 2743
>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full
insert sequence
Length = 3259
Score = 583 bits (294), Expect = e-164
Identities = 626/736 (85%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1983 agagagaatgggctaaagaatattcaccagttctcatggcctgaacattgcaagaattac 2042
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 2043 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 2102
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 2103 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 2159
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 2160 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 2219
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 2220 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 2279
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 2280 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2339
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2340 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2399
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2400 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2459
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2460 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2519
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2520 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2579
Query: 602 aatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgc 661
|||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 2580 aatcatctaccccctttaaaggagttgaggaaattgatgagaatccaatcactccgttgc 2639
Query: 662 aatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgc 721
||||| || ||||||||||| || |||||| | |||||||| || || |||||||||||
Sbjct: 2640 aatgccttgtataaccacagtgccaccagactctctgtagttcccattcacgcatcacgt 2699
Query: 722 tctcaggctctaaggt 737
|| ||||| |||||||
Sbjct: 2700 tcccaggcactaaggt 2715
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1572_F02
Length = 93626
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 86398 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 86457
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 86458 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 86517
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 86518 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 86574
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 86575 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 86634
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 86635 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 86694
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 86695 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 86754
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 86755 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 86814
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 86815 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 86874
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 86875 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 86934
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 86935 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 86994
Query: 602 aatcat 607
||||||
Sbjct: 86995 aatcat 87000
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 87126 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 87185
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 87186 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 87245
Query: 734 aggt 737
||||
Sbjct: 87246 aggt 87249
>gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003496, whole
genome shotgun sequence
Length = 32401
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Minus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3338 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 3279
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 3278 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 3219
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 3218 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 3162
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 3161 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 3102
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 3101 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 3042
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 3041 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 2982
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 2981 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 2922
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 2921 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 2862
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2861 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 2802
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 2801 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 2742
Query: 602 aatcat 607
||||||
Sbjct: 2741 aatcat 2736
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Minus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 2610 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 2551
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 2550 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 2491
Query: 734 aggt 737
||||
Sbjct: 2490 aggt 2487
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 86398 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 86457
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 86458 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 86517
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 86518 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 86574
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 86575 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 86634
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 86635 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 86694
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 86695 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 86754
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 86755 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 86814
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 86815 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 86874
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 86875 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 86934
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 86935 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 86994
Query: 602 aatcat 607
||||||
Sbjct: 86995 aatcat 87000
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 87126 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 87185
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 87186 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 87245
Query: 734 aggt 737
||||
Sbjct: 87246 aggt 87249
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4797605 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 4797664
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 4797665 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 4797724
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 4797725 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 4797781
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 4797782 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 4797841
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 4797842 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 4797901
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 4797902 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 4797961
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 4797962 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 4798021
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 4798022 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 4798081
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 4798082 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 4798141
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 4798142 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 4798201
Query: 602 aatcat 607
||||||
Sbjct: 4798202 aatcat 4798207
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 4798333 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 4798392
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 4798393 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 4798452
Query: 734 aggt 737
||||
Sbjct: 4798453 aggt 4798456
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4797605 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 4797664
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 4797665 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 4797724
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 4797725 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 4797781
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 4797782 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 4797841
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 4797842 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 4797901
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 4797902 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 4797961
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 4797962 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 4798021
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 4798022 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 4798081
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 4798082 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 4798141
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 4798142 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 4798201
Query: 602 aatcat 607
||||||
Sbjct: 4798202 aatcat 4798207
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 4798333 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 4798392
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 4798393 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 4798452
Query: 734 aggt 737
||||
Sbjct: 4798453 aggt 4798456
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 460 bits (232), Expect = e-127
Identities = 513/606 (84%), Gaps = 3/606 (0%)
Strand = Plus / Plus
Query: 2 agagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattac 61
||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 4714326 agagagaatgggctaaaaaatattcaccagttctcatggcctgaacattgcaagaattac 4714385
Query: 62 ctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgg 121
||||||||||| | || ||||| || || || |||||||||||| || | |||| | |
Sbjct: 4714386 ttgtcaaggatattgacacttggtccgagatcacctgctattggtggcaaacaggaacag 4714445
Query: 122 agtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaac 181
| | |||| || |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 4714446 a---aggcacccatatcaggaaggaagcatatcattgttatatctgtagactctgttaac 4714502
Query: 182 aaggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatg 241
||||||| ||||||| ||||||||||||| ||||||| |||| || | |||||| |||
Sbjct: 4714503 aaggaagatctagtccggataatcagaaacactattgaagtcacacgcacagaaaaaatg 4714562
Query: 242 tcgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactg 301
|| ||||||||||||||||||||||||||||| | || |||||||| |||| || |||
Sbjct: 4714563 tctggttcaactggttttgtgctgtcaacttcacttacaatatcagagatacgctcgctg 4714622
Query: 302 ctactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||| | |||| ||||||| | || |||| ||||||||||||||||||||||||||| |||
Sbjct: 4714623 ctagtgtctgcaggcatgttgcctactgtttttgatgctttcatctgcaatagtggaagt 4714682
Query: 362 aacatttactatccttcacattccagagaaacgtcaaacaactccaagattacatttgca 421
|| || || ||||||| |||| |||| ||| ||| || ||| || |||| ||||
Sbjct: 4714683 aatatctattatcctttgtattcgggagatacgccaagcagttcccaggttactcctgca 4714742
Query: 422 ttagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaa 481
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 4714743 atagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaagaaag 4714802
Query: 482 tatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagacaaatt 541
||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 4714803 tatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagacaaatt 4714862
Query: 542 atttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaatccc 601
||||||||||| || || |||||||| | ||||||||||||||||||||||| |||||
Sbjct: 4714863 atttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaatcca 4714922
Query: 602 aatcat 607
||||||
Sbjct: 4714923 aatcat 4714928
Score = 135 bits (68), Expect = 4e-029
Identities = 110/124 (88%)
Strand = Plus / Plus
Query: 614 cctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattatat 673
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 4715054 cctttaaaggagttgaggaaattgatgagaatccaatcactccgttgcaatgccttgtat 4715113
Query: 674 aaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctcta 733
|||||||| || |||||| | |||||||| || || ||||||||||| || ||||| |||
Sbjct: 4715114 aaccacagtgccaccagactctctgtagttcccattcacgcatcacgttcccaggcacta 4715173
Query: 734 aggt 737
||||
Sbjct: 4715174 aggt 4715177
>gb|AQ689876.1|AQ689876 nbxb0080D20f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0080D20f, DNA sequence
Length = 396
Score = 218 bits (110), Expect = 3e-054
Identities = 170/190 (89%)
Strand = Plus / Plus
Query: 418 tgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaaggcctaag 477
|||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 54 tgcaatagatcaaaatcaccaagcacatattgagtatcgatggggaggagaaggcctaag 113
Query: 478 gaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagagagaca 537
|| ||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||
Sbjct: 114 aaagtatctagtgaaatgggctacttcagtggtagaaagaaagggaagaatcgaaagaca 173
Query: 538 aattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtggttaa 597
||||||||||||||| || || |||||||| | ||||||||||||||||||||||| ||
Sbjct: 174 aattatttttgaagaccctgaacactcttcaacctattgtcttgcatttagagtggtcaa 233
Query: 598 tcccaatcat 607
||| ||||||
Sbjct: 234 tccaaatcat 243
>gb|CA999208.1|CA999208 S234O_C07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 599
Score = 212 bits (107), Expect = 2e-052
Identities = 272/327 (83%)
Strand = Plus / Plus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 121 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 180
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 181 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 240
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 241 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 300
Query: 591 tggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaat 650
|||| ||||| |||||| | ||||||||||||||| || |||||||||||||| || |
Sbjct: 301 tggtcaatccaaatcatttacctcctttaaaggagctgcaaaagttgatgagaattcagt 360
Query: 651 ctctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatcc 710
| |||||||| | || | |||||||| | ||||||||| |||||||| | || ||||
Sbjct: 361 cactccgttgtcacgctctgtataaccatggtgctaccagactatctgtaattccaatcc 420
Query: 711 acgcatcacgctctcaggctctaaggt 737
|||||||||| ||| ||||||||||||
Sbjct: 421 acgcatcacggtctaaggctctaaggt 447
Score = 63.9 bits (32), Expect = 1e-007
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 314 ggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 24 ggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 67
>gb|CB641942.1|CB641942 OSJNEb01N17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N17 5', mRNA sequence
Length = 814
Score = 212 bits (107), Expect = 2e-052
Identities = 272/327 (83%)
Strand = Plus / Plus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 320 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 379
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 380 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 439
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 440 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 499
Query: 591 tggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaat 650
|||| ||||| |||||| | ||||||||||||||| || |||||||||||||| || |
Sbjct: 500 tggtcaatccaaatcatttacctcctttaaaggagctgcaaaagttgatgagaattcagt 559
Query: 651 ctctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatcc 710
| |||||||| | || | |||||||| | ||||||||| |||||||| | || ||||
Sbjct: 560 cactccgttgtcacgctctgtataaccatggtgctaccagactatctgtaattccaatcc 619
Query: 711 acgcatcacgctctcaggctctaaggt 737
|||||||||| ||| ||||||||||||
Sbjct: 620 acgcatcacggtctaaggctctaaggt 646
Score = 65.9 bits (33), Expect = 3e-008
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 229 taaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatcaga 288
||||||||| |||| || || || ||||||||| ||||||||||| | || ||| ||
Sbjct: 138 taaagaaaatttgtcaggatcgacaggttttgtgttgtcaacttccctgacaatagggga 197
Query: 289 aatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcatctg 348
|||||||| || || | |||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 198 gatacattctctattaatgtctgctggcatgcttcctactgatttcgatgctttcatatg 257
Query: 349 caatagtgg 357
|||||||||
Sbjct: 258 caatagtgg 266
>dbj|AK071732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111F20, full
insert sequence
Length = 1067
Score = 176 bits (89), Expect = 1e-041
Identities = 233/281 (82%)
Strand = Plus / Plus
Query: 457 ttggggaggagaaggcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaag 516
||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 1 ttggggaggagaaggtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaag 60
Query: 517 aaagggaagaacagagagacaaattatttttgaagatccagagcactcttcggcgtattg 576
|| || || | || | |||| |||| || |||||||||||||||||||| | || ||
Sbjct: 61 aagagggaggattgaaaaacaagttatcttcgaagatccagagcactcttcaacatactg 120
Query: 577 tcttgcatttagagtggttaatcccaatcatcttcctcctttaaaggagttgaggaagtt 636
||||||||||| |||||| ||||| |||||| | ||||||||||||||| || |||||
Sbjct: 121 tcttgcatttaaagtggtcaatccaaatcatttacctcctttaaaggagctgcaaaagtt 180
Query: 637 gatgagaatccaatctctccgttgcaatgcattatataaccacagcgctaccagattatc 696
||||||||| || || |||||||| | || | |||||||| | ||||||||| ||||
Sbjct: 181 gatgagaattcagtcactccgttgtcacgctctgtataaccatggtgctaccagactatc 240
Query: 697 tgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||| | || |||||||||||||| ||| ||||||||||||
Sbjct: 241 tgtaattccaatccacgcatcacggtctaaggctctaaggt 281
>gb|CB000534.1|CB000534 S345C_D08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 592
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Plus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 394 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 453
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 454 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 513
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 514 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 573
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 574 tggtcaatccaaatcat 590
Score = 111 bits (56), Expect = 5e-022
Identities = 254/320 (79%)
Strand = Plus / Plus
Query: 38 tggcctgaacattgcaagaattacctgtcaaggatactaactcttggcccaaggtctcct 97
|||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 21 tggcctgaacattgcaagaattacttgtcaaggatatcaactcttggcccaaggcatcct 80
Query: 98 gctattggtaacagagaggagcggagtaatacacctatttcaggaaggaagaatatcatt 157
||| ||| | || || || |||| ||| |||||||| ||||||||| || ||| |
Sbjct: 81 gcttttgcaagcaatgaagaccggattaaggcacctattaagggaaggaagcatgtcact 140
Query: 158 gttatttctgtagactctgttaacaaggaaggtctagtcaggataatcagaaatgctatt 217
|||||| ||||||| ||||| | ||||||| ||| | | || |||||||| ||||
Sbjct: 141 gttattgctgtagattctgtcagtaaggaagatctgattcgcattgtcagaaattctatc 200
Query: 218 gaggtcatacataaagaaaacatgtcgggttcaactggttttgtgctgtcaacttcctta 277
|||| || ||||||||| |||| || || || ||||||||| ||||||||||| |
Sbjct: 201 gaggctgcacgtaaagaaaatttgtcaggatcgacaggttttgtgttgtcaacttccctg 260
Query: 278 acgatatcagaaatacattcactgctactatctggaggcatgcttcccactgattttgat 337
|| ||| || |||||||| || || | |||| ||||||||||| |||||||| |||
Sbjct: 261 acaataggggagatacattctctattaatgtctgctggcatgcttcctactgatttcgat 320
Query: 338 gctttcatctgcaatagtgg 357
|||||||| |||||||||||
Sbjct: 321 gctttcatatgcaatagtgg 340
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 3325742 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 3325683
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 3325682 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 3325623
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 3325622 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 3325563
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 3325562 tggtcaatccaaatcat 3325546
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 3326150 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 3326091
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 3326090 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 3326031
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 3326030 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 3325971
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 3325970 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 3325911
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 3325910 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 3325851
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 3325850 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 3325796
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 3325374 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 3325315
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 3325314 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 3325255
Query: 731 ctaaggt 737
|||||||
Sbjct: 3325254 ctaaggt 3325248
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 142461 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 142402
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 142401 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 142342
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 142341 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 142282
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 142281 tggtcaatccaaatcat 142265
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 142869 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 142810
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 142809 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 142750
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 142749 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 142690
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 142689 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 142630
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 142629 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 142570
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 142569 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 142515
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 142093 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 142034
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 142033 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 141974
Query: 731 ctaaggt 737
|||||||
Sbjct: 141973 ctaaggt 141967
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017B12
Length = 157424
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 15355 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 15296
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 15295 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 15236
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 15235 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 15176
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 15175 tggtcaatccaaatcat 15159
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 15763 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 15704
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 15703 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 15644
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 15643 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 15584
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 15583 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 15524
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 15523 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 15464
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 15463 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 15409
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 14987 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 14928
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 14927 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 14868
Query: 731 ctaaggt 737
|||||||
Sbjct: 14867 ctaaggt 14861
>gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014670, whole
genome shotgun sequence
Length = 47074
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 11035 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 10976
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 10975 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 10916
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 10915 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 10856
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 10855 tggtcaatccaaatcat 10839
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 11443 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 11384
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 11383 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 11324
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 11323 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 11264
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 11263 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 11204
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 11203 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 11144
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 11143 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 11089
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 10667 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 10608
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 10607 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 10548
Query: 731 ctaaggt 737
|||||||
Sbjct: 10547 ctaaggt 10541
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 7202018 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 7201959
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 7201958 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 7201899
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 7201898 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 7201839
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 7201838 tggtcaatccaaatcat 7201822
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 7202426 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 7202367
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 7202366 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 7202307
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 7202306 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 7202247
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 7202246 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 7202187
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 7202186 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 7202127
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 7202126 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 7202072
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 7201650 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 7201591
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 7201590 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 7201531
Query: 731 ctaaggt 737
|||||||
Sbjct: 7201530 ctaaggt 7201524
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 24900755 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 24900696
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 24900695 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 24900636
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 24900635 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 24900576
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 24900575 tggtcaatccaaatcat 24900559
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 24901163 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 24901104
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 24901103 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 24901044
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 24901043 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 24900984
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 24900983 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 24900924
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 24900923 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 24900864
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 24900863 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 24900809
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 24900387 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 24900328
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 24900327 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 24900268
Query: 731 ctaaggt 737
|||||||
Sbjct: 24900267 ctaaggt 24900261
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 145 bits (73), Expect = 4e-032
Identities = 166/197 (84%)
Strand = Plus / Minus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||
Sbjct: 25860257 ttacatttgcattagatcgtagttaccaatcacatatagagtatcattggggaggagaag 25860198
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||||||||| ||||||||||| |||| ||||||||||||| || || | |
Sbjct: 25860197 gtttaaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattg 25860138
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||||||||||||||| | || ||||||||||||| ||
Sbjct: 25860137 aaaaacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaag 25860078
Query: 591 tggttaatcccaatcat 607
|||| ||||| ||||||
Sbjct: 25860077 tggtcaatccaaatcat 25860061
Score = 125 bits (63), Expect = 4e-026
Identities = 282/355 (79%)
Strand = Plus / Minus
Query: 3 gagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaattacc 62
|||||||||| |||| |||||| || || || || ||||||||||||||||||||||||
Sbjct: 25860665 gagagaatgggctgaaaaatatacatcagttttcttggcctgaacattgcaagaattact 25860606
Query: 63 tgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcgga 122
||||||||||| |||||||||||||||| ||||||| ||| | || || || ||||
Sbjct: 25860605 tgtcaaggatatcaactcttggcccaaggcatcctgcttttgcaagcaatgaagaccgga 25860546
Query: 123 gtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaaca 182
||| |||||||| ||||||||| || ||| ||||||| ||||||| ||||| | |
Sbjct: 25860545 ttaaggcacctattaagggaaggaagcatgtcactgttattgctgtagattctgtcagta 25860486
Query: 183 aggaaggtctagtcaggataatcagaaatgctattgaggtcatacataaagaaaacatgt 242
|||||| ||| | | || |||||||| |||| |||| || ||||||||| |||
Sbjct: 25860485 aggaagatctgattcgcattgtcagaaattctatcgaggctgcacgtaaagaaaatttgt 25860426
Query: 243 cgggttcaactggttttgtgctgtcaacttccttaacgatatcagaaatacattcactgc 302
| || || || ||||||||| ||||||||||| | || ||| || |||||||| ||
Sbjct: 25860425 caggatcgacaggttttgtgttgtcaacttccctgacaataggggagatacattctctat 25860366
Query: 303 tactatctggaggcatgcttcccactgattttgatgctttcatctgcaatagtgg 357
|| | |||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 25860365 taatgtctgctggcatgcttcctactgatttcgatgctttcatatgcaatagtgg 25860311
Score = 77.8 bits (39), Expect = 8e-012
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 611 cctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcatta 670
||||||||||||||| || |||||||||||||| || || |||||||| | || |
Sbjct: 25859889 cctcctttaaaggagctgcaaaagttgatgagaattcagtcactccgttgtcacgctctg 25859830
Query: 671 tataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggct 730
|||||||| | ||||||||| |||||||| | || |||||||||||||| ||| |||||
Sbjct: 25859829 tataaccatggtgctaccagactatctgtaattccaatccacgcatcacggtctaaggct 25859770
Query: 731 ctaaggt 737
|||||||
Sbjct: 25859769 ctaaggt 25859763
>gb|CB641944.1|CB641944 OSJNEb01N18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb01N18 5', mRNA sequence
Length = 665
Score = 139 bits (70), Expect = 2e-030
Identities = 262/326 (80%)
Strand = Plus / Plus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
|||||||||||||||||| | | |||| |||||||| || ||| |||||||||||||
Sbjct: 319 ttacatttgcattagatcgtagttaccaatcacatatacagaatcattggggaggagaac 378
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||| ||||||||| ||||||||||| |||| |||||| ||| || || || | |
Sbjct: 379 gtttaacgaaatatctagtgaagtgggcttcttccgtggtacaaataacagggaggattg 438
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | |||| |||| || |||||||| |||||||||| | || ||||||||||||| ||
Sbjct: 439 aaaaacaagttatcttctaagatccacagcactcttcaacatactgtcttgcatttaaag 498
Query: 591 tggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaat 650
|||| ||||| |||||| | ||||||||||||||| || |||||||||||||| || |
Sbjct: 499 tggtcaatccaaatcatttacctcctttaaaggagctgcaaaagttgatgagaattcagt 558
Query: 651 ctctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatcc 710
| |||||||| | || | |||||||| | ||||||| | |||||||| | || ||||
Sbjct: 559 cactccgttgtcacgctctgtataaccatggtgctaccatactatctgtaattccaatcc 618
Query: 711 acgcatcacgctctcaggctctaagg 736
|||||||||| ||| |||||||||||
Sbjct: 619 acgcatcacggtctaaggctctaagg 644
Score = 60.0 bits (30), Expect = 2e-006
Identities = 102/126 (80%)
Strand = Plus / Plus
Query: 229 taaagaaaacatgtcgggttcaactggttttgtgctgtcaacttccttaacgatatcaga 288
||||||||| |||| || || || ||||||||| ||||||||||| | || ||| ||
Sbjct: 137 taaagaaaatttgtcaggatcgacaggttttgtgttgtcaacttccctgacaatagggga 196
Query: 289 aatacattcactgctactatctggaggcatgcttcccactgattttgatgctttcatctg 348
|||||||| || || | |||| ||||||||||| |||||||| ||||||||||| ||
Sbjct: 197 gatacattctctattaatgtctgctggcatgcttcctactgatttcgatgctttcatatg 256
Query: 349 caatag 354
||||||
Sbjct: 257 caatag 262
>gb|CB683436.1|CB683436 OSJNEf11M21.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11M21 3', mRNA sequence
Length = 793
Score = 101 bits (51), Expect = 5e-019
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 635 ttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgctaccagatta 694
||||||||||||||||| |||||||||||||| || ||||||||||| || |||||| |
Sbjct: 755 ttgatgagaatccaatcactccgttgcaatgccttgtataaccacagtgccaccagactc 696
Query: 695 tctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||||||| || || ||||||||||| || ||||| |||||||
Sbjct: 695 tctgtagttcccattcacgcatcacgttcccaggcactaaggt 653
>gb|CB683879.1|CB683879 OSJNEf12N22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf12N22 5', mRNA sequence
Length = 707
Score = 93.7 bits (47), Expect = 1e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 635 ttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgctaccagatta 694
|||||||||||||| || |||||||||||||| || ||||||||||| || |||||| |
Sbjct: 3 ttgatgagaatccattcactccgttgcaatgccttgtataaccacagtgccaccagactc 62
Query: 695 tctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||||||| || || ||||||||||| || ||||| |||||||
Sbjct: 63 tctgtagttcccattcacgcatcacgttcccaggcactaaggt 105
>gb|AZ046238.1|AZ046238 nbeb0091B05r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0091B05r, DNA
sequence
Length = 902
Score = 91.7 bits (46), Expect = 5e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 474 taaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacagaga 533
||||||||||||| ||||||||||| |||| ||||||||||||| || || | || |
Sbjct: 235 taaggaaatatctagtgaagtgggcttcttccgtggtagaaagaagagggaggattgaaa 176
Query: 534 gacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagagtgg 593
|||| |||| || |||||||||||||||||||| | || ||||||||||||| |||||
Sbjct: 175 aacaagttatcttcgaagatccagagcactcttcaacatactgtcttgcatttaaagtgg 116
Query: 594 ttaatcccaatcat 607
| ||||| ||||||
Sbjct: 115 tcaatccaaatcat 102
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 317 atgcttcccactgattttgatgctttcatctgcaatagtgg 357
|||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 391 atgcttcctactgatttcgatgctttcatatgcaatagtgg 351
>gb|CA999246.1|CA999246 S234P_C03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 519
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 79 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 125
>gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14H08 5', mRNA sequence
Length = 846
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 142 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 188
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
insert sequence
Length = 3858
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 2179 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 2225
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1115_A07
Length = 165126
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 15530 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 15576
>gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017983, whole
genome shotgun sequence
Length = 17582
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 6027 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 6073
>dbj|BA000044.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
centromeric region
Length = 1992366
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 462996 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 463042
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3201
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 1984 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 2030
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 12171817 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 12171863
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 4162146 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 4162192
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 11764152 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 11764198
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 12411501 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 12411547
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 8 aatggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
||||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 80816 aatggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 80862
>gb|AQ843521.1|AQ843521 nbxb0020K24f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0020K24f, DNA
sequence
Length = 388
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 9 atggactgacaaatattcaccaattctcgtggcctgaacattgcaa 54
|||| |||| ||||||||| ||||| || |||||||||||||||||
Sbjct: 37 atggtctgaaaaatattcatcaattttcttggcctgaacattgcaa 82
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,192,976
Number of Sequences: 438736
Number of extensions: 1192976
Number of successful extensions: 8227
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7888
Number of HSP's gapped (non-prelim): 328
length of query: 737
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 716
effective length of database: 2,791,206,460
effective search space: 1998503825360
effective search space used: 1998503825360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)