BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA 819 0.0
dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA... 795 0.0
dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA... 547 e-153
gb|CF323675.1|CF323675 HDN--04-H15.g1 OsHDAC1-overexpressin... 525 e-146
gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (j... 496 e-137
gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (j... 458 e-126
gb|C26452.1|C26452 C26452 Rice callus cDNA Oryza sativa (ja... 430 e-118
dbj|AP005291.3| Oryza sativa (japonica cultivar-group) geno... 406 e-110
gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) c... 406 e-110
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 406 e-110
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 406 e-110
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 406 e-110
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 406 e-110
ref|XM_473336.1| Oryza sativa (japonica cultivar-group), p... 341 5e-091
gb|C27395.1|C27395 C27395 Rice callus cDNA Oryza sativa (ja... 272 4e-070
dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA,... 204 8e-050
gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) c... 204 8e-050
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 204 8e-050
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromoso... 204 8e-050
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 204 8e-050
gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library O... 196 2e-047
gb|AQ273370.1|AQ273370 nbxb0030C03f CUGI Rice BAC Library O... 176 2e-041
gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (j... 109 3e-021
dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA... 109 3e-021
gb|AQ687389.1|AQ687389 nbxb0074P05r CUGI Rice BAC Library O... 82 8e-013
dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.042
gb|CB684359.1|CB684359 OSJNEf13M15.f OSJNEf Oryza sativa (j... 44 0.17
dbj|AK069245.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
dbj|AK069675.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
dbj|AK072504.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
gb|AACV01013080.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 44 0.17
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 44 0.17
ref|XM_550348.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.17
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2113
Score = 819 bits (413), Expect = 0.0
Identities = 731/837 (87%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||| || |||||||| | ||||| ||||||||||| ||||| || ||||||| ||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || | || |||||| | | ||||| ||||| |||||||| || ||||| || ||||
Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
| | ||||| || ||||||||| |||| ||||| |||||||||| || ||||| || |
Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaag 1555
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1494 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 1435
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| | || ||||| || |
Sbjct: 1434 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 1375
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 1374 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 1315
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgct 914
|| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1314 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 1255
Query: 915 ccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgat 974
|||||||||| || || |||||||||||||| | |||||| ||||||||||| |||||||
Sbjct: 1254 ccaactctttctttgccctctcagcctcatttagcttttttagagtgtctggattccgat 1195
Query: 975 gctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttag 1034
|||||||||||||||||||| | ||||| |||||||| ||| | ||||||||||||||||
Sbjct: 1194 gctcagttagagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttag 1135
Query: 1035 caagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcag 1094
|||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1134 caagtttggctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcag 1075
Query: 1095 cacgaagttctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1074 cacgaagttcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 1018
>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full
insert sequence
Length = 2113
Score = 795 bits (401), Expect = 0.0
Identities = 728/837 (86%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||| || |||||||| | ||||| ||||||||||| ||||| || ||||||| ||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || | || |||||| | | ||||| ||||| |||||||| || ||||| || ||||
Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
| | ||||| || ||||||||| |||| ||||| ||||||||| || ||||| || |
Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggaccatgcttcaaaccggcctggtaag 1555
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1494 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 1435
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| | || ||||| || |
Sbjct: 1434 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 1375
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
||||| || |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 1374 ttctcccgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 1315
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgct 914
|| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1314 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 1255
Query: 915 ccaactcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgat 974
|||||||||| || || |||||||||||||| | |||||| ||||||||||| |||||||
Sbjct: 1254 ccaactctttctttgccctctcagcctcatttagcttttttagagtgtctggattccgat 1195
Query: 975 gctcagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttag 1034
|||||||||||||||||||| | ||||| |||||||| ||| | ||||||||||||||||
Sbjct: 1194 gctcagttagagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttag 1135
Query: 1035 caagcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcag 1094
|||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1134 caagtttggctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcag 1075
Query: 1095 cacgaagttctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1074 cacgaagttcccttcccctctccacagccttatcacagtccttaacgcattcatcgt 1018
>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full
insert sequence
Length = 1963
Score = 547 bits (276), Expect = e-153
Identities = 693/832 (83%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 1819 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 1760
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctcatga 437
| || ||| |||| || ||| | || ||||||||||| || | | |||||| |||||
Sbjct: 1759 tgagatgcgcctgagcagccttcggattctcctggaagtcggtcaacacctgctgcatga 1700
Query: 438 tagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtctttctt 497
|||| || | |||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 1699 taggatccttcagaatgttctggatttctgggtcctgcatagccttgttctgtctttctt 1640
Query: 498 gcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacctcc 557
||||||| ||||| || | ||| |||||| |||||||||| || | | | || ||||
Sbjct: 1639 gcaattcctcctggctcagttcccctctgctagccttgttgatccgctggacacatctcc 1580
Query: 558 taacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggttt 617
||||||||||||||| |||||||| |||||||||||||| | ||| |||||||||||||
Sbjct: 1579 taacaccatcaagcaactcctggttgttcgggtcatgctttaagccggcctgataggttt 1520
Query: 618 ccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtaccctt 677
||| || |||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct: 1519 ccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgtatccct 1460
Query: 678 tagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatgg 737
| | ||| || || |||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 1459 tggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcaggcattg 1400
Query: 738 ctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttc 797
|||| | |||||| || ||||| ||||| |||||||| ||||| |||||||| |||||||
Sbjct: 1399 ctccaagcttggtataacaggcggccctgttgctgtatacccttggatccttggggtttc 1340
Query: 798 tcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaact 857
|| ||||||| || |||| || || | ||||||||||||||| |||| ||||||||| |
Sbjct: 1339 tcctgagagcttcactgtaatgcttcactgcttctgggtatttctgctgcttgaagaatt 1280
Query: 858 cgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgctcca 917
| || |||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| |
Sbjct: 1279 cattacctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctcta 1220
Query: 918 actcttttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgct 977
||| || || ||| | ||||| ||||||| || || || || |||||||| | ||||
Sbjct: 1219 gctccttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgct 1160
Query: 978 cagttagagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaa 1037
|||| |||||||| ||||| ||||| ||||||| |||| |||| || || ||||||||
Sbjct: 1159 cagtcagagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaa 1100
Query: 1038 gcttgactagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcac 1097
||| | ||||| ||||| ||||| ||||||||||| || || |||||||||||||||
Sbjct: 1099 tcttagcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcat 1040
Query: 1098 gaagttctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
||||||| ||||||||||| ||||||||||||| ||| |||||||| |||||
Sbjct: 1039 gaagttcccttcccctctcaacagccttatcacggtcgttgatgcactcatc 988
>gb|CF323675.1|CF323675 HDN--04-H15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-H15, mRNA sequence
Length = 516
Score = 525 bits (265), Expect = e-146
Identities = 448/508 (88%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 572 agttcctggtttttcgggtcatgcttcaggccagcctgataggtttccatggccttgtca 631
|||||| |||| ||||| |||||||||| || ||||| || |||||||| |||||||||
Sbjct: 516 agttccgggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttgtca 457
Query: 632 tattctttcatgaagaattgaattgcaccttt--ccttgtgtaccctttagtgaaggtgg 689
|||||||||||||| || ||||||||||| || |||||| |||||||| | ||||||||
Sbjct: 456 tattctttcatgaaaaactgaattgcaccctttcccttgtataccctttggagaaggtgg 397
Query: 690 ggtctagttcaagacacttctctgcatctttaagaccttcaggcatggctcctaacttgg 749
| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 396 gatctagttcaatgcacttctctgcatctttaagaccttcaggcatggctcccaacttgg 337
Query: 750 tgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctcttgagagcct 809
||||||| ||||||||||||||||| ||| | || ||||| || |||||| ||| |||||
Sbjct: 336 tgtagcatgcagccctattgctgtacaccttcgggtccttaggatttctcctgatagcct 277
Query: 810 ccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcctttct 869
| ||||| || |||| || ||||| ||||||||||||||||| | || || |||||||
Sbjct: 276 cagtgtaatgctttaccgcgtctggatatttttgctccttgaaaagctgattacctttct 217
Query: 870 ctctctcctcatctgctaattttggatcatagtactcttgttgctccaactcttttttcg 929
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct: 216 ctctctcttcatctgctaactttggatcatagtactcttgttgctccaactctttctttg 157
Query: 930 ctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagttagagcct 989
| |||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 156 ccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagttagagcct 97
Query: 990 tctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttgactagag 1049
||||| | ||||| |||||||| ||| | |||||||||||||||||||| ||| |||| |
Sbjct: 96 tctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttggctaggg 37
Query: 1050 ctgttccttttcttgtcagtgcccttga 1077
||||||||||||||||||||||||||||
Sbjct: 36 ctgttccttttcttgtcagtgcccttga 9
>gb|CB663561.1|CB663561 OSJNEd08L01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08L01 3', mRNA sequence
Length = 746
Score = 496 bits (250), Expect = e-137
Identities = 520/610 (85%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 126 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 185
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||| || |||||||| ||||| ||||||||||| ||||| || ||||||| ||
Sbjct: 186 tcttaagatgctcctgaaaagccctagggttctcctgcaaatcgaccagtacctgtcgca 245
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||| || || |||| ||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 246 tgatgggatctgtaaaaatattctggatctctggatcctgcatagccttgttctgtcgtt 305
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || | || |||||| | | ||||| ||||| |||||||| || ||||| || ||||
Sbjct: 306 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 365
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
| | ||||| || ||||||||| |||| ||||| |||||||||| || ||||| | |
Sbjct: 366 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggaaag 425
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 426 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 485
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 486 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 545
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| | || ||||| || |
Sbjct: 546 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 605
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 606 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 665
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttgct 914
|| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 666 gctgattacctttctctctctcttcatctgctaactttggatcatagtactcttgttgct 725
Query: 915 ccaactcttt 924
||||||||||
Sbjct: 726 ccaactcttt 735
>gb|CB646111.1|CB646111 OSJNEb08F02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08F02 3', mRNA sequence
Length = 847
Score = 458 bits (231), Expect = e-126
Identities = 495/583 (84%)
Strand = Plus / Plus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 265 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 324
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctgtctca 434
|||| || |||||||| | ||||| ||||||||||| ||||| || ||||||| ||
Sbjct: 325 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 384
Query: 435 tgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgtcttt 494
|||| || || |||||||| |||||||||||||| || |||||||| |||||||||| ||
Sbjct: 385 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 444
Query: 495 cttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaatgcacc 554
| || | || |||||| | | ||||| ||||| |||||||| || ||||| || ||||
Sbjct: 445 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 504
Query: 555 tcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgatagg 614
| | ||||| || ||||||||| |||| ||||| |||||||||| || ||||| || |
Sbjct: 505 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaag 564
Query: 615 tttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacc 674
||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct: 565 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 624
Query: 675 ctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggca 734
|||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 ctttggagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggca 684
Query: 735 tggctcctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggt 794
||||||| |||||||||||||| ||||||||||||||||| ||| | || ||||| || |
Sbjct: 685 tggctcccaacttggtgtagcatgcagccctattgctgtacaccttcgggtccttaggat 744
Query: 795 ttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaaga 854
||||| ||| |||||| ||||| || |||| || ||||| ||||||||||||||||| |
Sbjct: 745 ttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgctccttgaaaa 804
Query: 855 actcgttgcctttctctctctcctcatctgctaattttggatc 897
|| | |||||||||||||| ||||||||||| ||||||||
Sbjct: 805 gctgaatacctttctctctctcttcatctgctaactttggatc 847
>gb|C26452.1|C26452 C26452 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12349_1A, mRNA sequence
Length = 445
Score = 430 bits (217), Expect = e-118
Identities = 382/434 (88%), Gaps = 4/434 (0%)
Strand = Plus / Minus
Query: 719 ttaagaccttcaggcatggctcctaacttggtgtagcaggcagccctattgctgtaaacc 778
|||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||| ||
Sbjct: 444 ttaagacctt-aggcatggctccnaacttggtgnagcatgcagccctattgctgtacacn 386
Query: 779 ctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtat 838
| || ||||| || || | | ||| |||||| ||||| || |||| || |||| |||
Sbjct: 385 -tcgggtccttaggatt-cncctgatagcctcagtgtaatgctttaccgcgcctggatat 328
Query: 839 ttttgctccttgaagaactcgttgcctttctctctctcct-catctgctaattttggatc 897
|||||||||||||| | || || |||||||||||||||| |||||||||| ||||||||
Sbjct: 327 ttttgctccttgaaaagctgattacctttctctctctccttcatctgctaactttggatc 268
Query: 898 atagtactcttgttgctccaactcttttttcgctctctcagcctcattcaactttttaag 957
||||||||||||||||||||||||||| || || |||||||||| ||| | |||||| ||
Sbjct: 267 atagtactcttgttgctccaactctttctttgccctctcagcctnatttagcttttttag 208
Query: 958 agtgtctgggttccgatgctcagttagagccttctggtaggtctcgatggcaatatcaaa 1017
||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| | | |
Sbjct: 207 agtgtctggattccgatgctcagttagagccttctggaaagtctcaatggcaatgtnata 148
Query: 1018 atccttagaggtcttagcaagcttgactagagctgttccttttcttgtcagtgcccttga 1077
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 147 gtccttagaggtcttagcaagtttggctagggctgttccttttcttgtcagtgcccttga 88
Query: 1078 aatcatcttgaaatcagcacgaagttctcttcccctctccacagccttatcacagtcctt 1137
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 87 gatcatcttgaaatcagcacgaagttcccttcccctctccacagccttatnacagtcctt 28
Query: 1138 gatgcattcatcgt 1151
|||||||||||||
Sbjct: 27 aatgcattcatcgt 14
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_H11
Length = 143314
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 68041 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 67982
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 67981 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 67922
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 67921 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 67862
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 67861 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 67802
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 67801 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 67753
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 68825 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 68766
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 68765 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 68706
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 68705 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 68646
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 68645 cccaacttggtgtagcatgcagccctattgctgta 68611
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 69447 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 69388
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 69387 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 69345
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 69232 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 69173
Query: 485 ttct 488
||||
Sbjct: 69172 ttct 69169
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 68283 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 68224
Query: 845 tccttgaa 852
||||||||
Sbjct: 68223 tccttgaa 68216
>gb|AACV01005016.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005016, whole
genome shotgun sequence
Length = 29067
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 22263 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 22204
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 22203 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 22144
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 22143 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 22084
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22083 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 22024
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 22023 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 21975
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 23047 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 22988
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 22987 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 22928
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22927 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 22868
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 22867 cccaacttggtgtagcatgcagccctattgctgta 22833
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 23669 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 23610
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 23609 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 23567
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 23454 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 23395
Query: 485 ttct 488
||||
Sbjct: 23394 ttct 23391
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 22505 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 22446
Query: 845 tccttgaa 852
||||||||
Sbjct: 22445 tccttgaa 22438
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1081699 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 1081640
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 1081639 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 1081580
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 1081579 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 1081520
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1081519 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 1081460
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1081459 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 1081411
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 1082483 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 1082424
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 1082423 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 1082364
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1082363 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 1082304
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 1082303 cccaacttggtgtagcatgcagccctattgctgta 1082269
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 1083105 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1083046
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 1083045 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 1083003
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 1082890 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 1082831
Query: 485 ttct 488
||||
Sbjct: 1082830 ttct 1082827
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 1081941 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 1081882
Query: 845 tccttgaa 852
||||||||
Sbjct: 1081881 tccttgaa 1081874
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12294628 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 12294569
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 12294568 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 12294509
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 12294508 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 12294449
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12294448 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 12294389
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12294388 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 12294340
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 12295412 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 12295353
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 12295352 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 12295293
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 12295292 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 12295233
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 12295232 cccaacttggtgtagcatgcagccctattgctgta 12295198
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 12296034 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 12295975
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 12295974 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 12295932
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 12295819 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 12295760
Query: 485 ttct 488
||||
Sbjct: 12295759 ttct 12295756
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 12294870 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 12294811
Query: 845 tccttgaa 852
||||||||
Sbjct: 12294810 tccttgaa 12294803
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 25747692 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 25747633
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 25747632 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 25747573
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 25747572 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 25747513
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 25747512 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 25747453
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25747452 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 25747404
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 25748476 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 25748417
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 25748416 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 25748357
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 25748356 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 25748297
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 25748296 cccaacttggtgtagcatgcagccctattgctgta 25748262
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 25749098 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25749039
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 25749038 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25748996
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 25748883 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 25748824
Query: 485 ttct 488
||||
Sbjct: 25748823 ttct 25748820
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 25747934 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 25747875
Query: 845 tccttgaa 852
||||||||
Sbjct: 25747874 tccttgaa 25747867
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 406 bits (205), Expect = e-110
Identities = 268/289 (92%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 25916700 cctttctctctctcttcatctgctaactttggatcatagtactcttgttgctccaactct 25916641
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || || |||||||||||||| | |||||| ||||||||||| |||||||||||||||
Sbjct: 25916640 ttctttgccctctcagcctcatttagcttttttagagtgtctggattccgatgctcagtt 25916581
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||||||| | ||||| |||||||| ||| | |||||||||||||||||||| |||
Sbjct: 25916580 agagccttctggaaagtctcaatggcaatgtcatagtccttagaggtcttagcaagtttg 25916521
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 25916520 gctagggctgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagt 25916461
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatcgt 1151
|| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25916460 tcccttcccctctccacagccttatcacagtccttaatgcattcatcgt 25916412
Score = 260 bits (131), Expect = 2e-066
Identities = 194/215 (90%)
Strand = Plus / Minus
Query: 560 acaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgataggtttcc 619
||||| || ||||||||| |||| ||||| |||||||||| || ||||| || ||||||
Sbjct: 25917484 acaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttcc 25917425
Query: 620 atggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgtacccttta 679
|| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 25917424 attgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtataccctttg 25917365
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 25917364 gagaaggtgggatctagttcaatgcacttctctgcatctttaagaccttcaggcatggct 25917305
Query: 740 cctaacttggtgtagcaggcagccctattgctgta 774
|| |||||||||||||| |||||||||||||||||
Sbjct: 25917304 cccaacttggtgtagcatgcagccctattgctgta 25917270
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 25918106 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25918047
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 25918046 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25918004
Score = 63.9 bits (32), Expect = 2e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 425 acctgtctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttg 484
||||||| |||||| || || |||||||| |||||||||||||| || |||||||| |||
Sbjct: 25917891 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagccttg 25917832
Query: 485 ttct 488
||||
Sbjct: 25917831 ttct 25917828
Score = 48.1 bits (24), Expect = 0.011
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 785 tcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctgggtatttttgc 844
||||| || |||||| ||| |||||| ||||| || |||| || ||||| |||||||||
Sbjct: 25916942 tccttaggatttctcctgatagcctcagtgtaatgctttaccgcgtctggatatttttgc 25916883
Query: 845 tccttgaa 852
||||||||
Sbjct: 25916882 tccttgaa 25916875
>ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2241
Score = 341 bits (172), Expect = 5e-091
Identities = 427/512 (83%)
Strand = Plus / Minus
Query: 344 agcttctgaatcttttgcataactccagggttcttcaggtgctcctgggccgcccttggg 403
|||||||| ||||| ||||| ||||| |||||||| || ||| |||| || ||| | ||
Sbjct: 2228 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 2169
Query: 404 ttctcctggaaatcatttagcacctgtctcatgatagggtcggtaagaatgttctggatc 463
||||||||||| || | | |||||| ||||||||| || | ||||||||||||||
Sbjct: 2168 ttctcctggaagtcggtcaacacctgctgcatgataggatccttcagaatgttctggatt 2109
Query: 464 tctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctgacttatttcacct 523
|||||||| |||||||| ||||||||||||||||||||||| ||||| || | ||| |||
Sbjct: 2108 tctgggtcctgcatagccttgttctgtctttcttgcaattcctcctggctcagttcccct 2049
Query: 524 ctgttagccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcctggttt 583
||| |||||||||| || | | | || ||||||||||||||||||| ||||||||
Sbjct: 2048 ctgctagccttgttgatccgctggacacatctcctaacaccatcaagcaactcctggttg 1989
Query: 584 ttcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatattctttcatg 643
|||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 1988 ttcgggtcatgctttaggccggcctgataggtttccagtgctttgtcatattctttcatg 1929
Query: 644 aagaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagttcaaga 703
|| ||||| |||||||||||||||||||| || || | ||| || || ||||||||||
Sbjct: 1928 aaaaattggattgcacctttccttgtgtatcccttggagaatgtaggatctagttcaatg 1869
Query: 704 cacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcaggcagcc 763
|| || || |||||||| |||||||||||||| ||||| | |||||| || ||||| |||
Sbjct: 1868 catttttcagcatctttgagaccttcaggcattgctccaagcttggtataacaggcggcc 1809
Query: 764 ctattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgtagtgtttt 823
|| |||||||| ||||| |||||||| ||||||||| ||||||| || |||| || ||
Sbjct: 1808 ctgttgctgtatacccttggatccttggggtttctcctgagagcttcactgtaatgcttc 1749
Query: 824 attgcttctgggtatttttgctccttgaagaa 855
| ||||||||||||||| |||| |||||||||
Sbjct: 1748 actgcttctgggtatttctgctgcttgaagaa 1717
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 1664 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 1605
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 1604 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 1545
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 1544 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 1485
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 1484 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 1425
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 1424 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 1378
>gb|C27395.1|C27395 C27395 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51776_1A, mRNA sequence
Length = 382
Score = 272 bits (137), Expect = 4e-070
Identities = 258/299 (86%)
Strand = Plus / Plus
Query: 518 tcacctctgttagccttgttaatttgttcaatgcacctcctaacaccatcaagcagttcc 577
||||| ||||| |||||||| || ||||| || ||||| | ||||| || |||||||||
Sbjct: 39 tcacccctgttggccttgttgatctgttcgatacaccttttcacaccgtccagcagttcc 98
Query: 578 tggtttttcgggtcatgcttcaggccagcctgataggtttccatggccttgtcatattct 637
|||| ||||| |||||||||| || ||||| || |||||||| |||||||||||||||
Sbjct: 99 gggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttgtcatattct 158
Query: 638 ttcatgaagaattgaattgcacctttccttgtgtaccctttagtgaaggtggggtctagt 697
||||||| || |||||||||||||||||||| |||||||| | ||||||||| ||||||
Sbjct: 159 ntcatgaaaaactgaattgcacctttccttgtataccctttggagaaggtgggatctagt 218
Query: 698 tcaagacacttctctgcatctttaagaccttcaggcatggctcctaacttggtgtagcag 757
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 219 tcaatgcacttctctgcatctttaagaccttcaggcatggctcccaacttggtgtagcat 278
Query: 758 gcagccctattgctgtaaaccctaggatcctttgggtttctcttgagagcctccgtgta 816
||||||||||||||||| | | | || ||||| || |||||| ||| |||||| |||||
Sbjct: 279 gcagccctattgctgtacancttcgggtccttaggatttctcctgatagcctcagtgta 337
>dbj|AG208077.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12882T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 730
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Plus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 171 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 230
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 231 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 290
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 291 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 350
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 351 gcattgctccaagcttggtataacaggcggccctgttgctgta 393
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 20 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 70
>gb|AACV01010199.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010199, whole
genome shotgun sequence
Length = 11181
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 5419 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 5360
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 5359 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 5300
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 5299 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 5240
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 5239 gcattgctccaagcttggtataacaggcggccctgttgctgta 5197
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 4766 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 4707
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 4706 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 4647
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 4646 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 4587
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 4586 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 4527
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 4526 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 4480
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 6288 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 6229
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 6228 tgagatgcgcctgagcagccttcggattctcctggaa 6192
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 4944 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 4885
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 4884 tatttctgctgcttgaagaa 4865
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 6065 agaatgttctggatttctgggtcctgcatagccttgttctg 6025
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 5570 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 5520
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 665679 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 665620
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 665619 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 665560
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 665559 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 665500
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 665499 gcattgctccaagcttggtataacaggcggccctgttgctgta 665457
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 665026 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 664967
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 664966 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 664907
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 664906 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 664847
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 664846 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 664787
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 664786 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 664740
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 666548 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 666489
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 666488 tgagatgcgcctgagcagccttcggattctcctggaa 666452
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 665204 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 665145
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 665144 tatttctgctgcttgaagaa 665125
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 666325 agaatgttctggatttctgggtcctgcatagccttgttctg 666285
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 665830 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 665780
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 4710392 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 4710333
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 4710332 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 4710273
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 4710272 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 4710213
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 4710212 gcattgctccaagcttggtataacaggcggccctgttgctgta 4710170
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 4709739 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 4709680
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 4709679 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 4709620
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 4709619 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 4709560
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 4709559 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 4709500
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 4709499 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 4709453
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 4711261 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 4711202
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 4711201 tgagatgcgcctgagcagccttcggattctcctggaa 4711165
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 4709917 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 4709858
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 4709857 tatttctgctgcttgaagaa 4709838
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 4711038 agaatgttctggatttctgggtcctgcatagccttgttctg 4710998
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 4710543 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 4710493
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 23854491 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 23854432
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 23854431 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 23854372
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 23854371 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 23854312
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 23854311 gcattgctccaagcttggtataacaggcggccctgttgctgta 23854269
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 23853838 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 23853779
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 23853778 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 23853719
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 23853718 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 23853659
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 23853658 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 23853599
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 23853598 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 23853552
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 23855360 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 23855301
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 23855300 tgagatgcgcctgagcagccttcggattctcctggaa 23855264
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 23854016 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 23853957
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 23853956 tatttctgctgcttgaagaa 23853937
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 23855137 agaatgttctggatttctgggtcctgcatagccttgttctg 23855097
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 23854642 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 23854592
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
complete sequence
Length = 174570
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 110195 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 110136
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 110135 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 110076
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 110075 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 110016
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 110015 gcattgctccaagcttggtataacaggcggccctgttgctgta 109973
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 109542 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 109483
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 109482 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 109423
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 109422 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 109363
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 109362 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 109303
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 109302 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 109256
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 111064 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 111005
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 111004 tgagatgcgcctgagcagccttcggattctcctggaa 110968
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 109720 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 109661
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 109660 tatttctgctgcttgaagaa 109641
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 110841 agaatgttctggatttctgggtcctgcatagccttgttctg 110801
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 110346 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 110296
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 204 bits (103), Expect = 8e-050
Identities = 193/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 26889135 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 26889076
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 26889075 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 26889016
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 26889015 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 26888956
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | |||||| || ||||| ||||| ||||||||
Sbjct: 26888955 gcattgctccaagcttggtataacaggcggccctgttgctgta 26888913
Score = 196 bits (99), Expect = 2e-047
Identities = 240/287 (83%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttgctccaactct 922
|||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | |||
Sbjct: 26888482 cctttctctcgctcctcatcagctatttttggatcatagtactcttgctgctctagctcc 26888423
Query: 923 tttttcgctctctcagcctcattcaactttttaagagtgtctgggttccgatgctcagtt 982
|| || ||| | ||||| ||||||| || || || || |||||||| | ||||||||
Sbjct: 26888422 ttctttgctatttcagcatcattcagtttcttcagggtatctgggtttctgtgctcagtc 26888363
Query: 983 agagccttctggtaggtctcgatggcaatatcaaaatccttagaggtcttagcaagcttg 1042
|||||||| ||||| ||||| ||||||| |||| |||| || || |||||||| |||
Sbjct: 26888362 agagccttttggtaagtctcaatggcaacatcataatctttgaagcacttagcaatctta 26888303
Query: 1043 actagagctgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagt 1102
| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct: 26888302 gcaagagcagttccctttctggtcagtgccctagagatgatcttgaaatcagcatgaagt 26888243
Query: 1103 tctcttcccctctccacagccttatcacagtccttgatgcattcatc 1149
|| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 26888242 tcccttcccctctcaacagccttatcacagtcgttgatgcactcatc 26888196
Score = 81.8 bits (41), Expect = 8e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 318 tcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggttct 377
|||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct: 26890004 tcatttggactatccctgcacttactagcttctggatcttctgcatcactccggggttct 26889945
Query: 378 tcaggtgctcctgggccgcccttgggttctcctggaa 414
| || ||| |||| || ||| | || |||||||||||
Sbjct: 26889944 tgagatgcgcctgagcagccttcggattctcctggaa 26889908
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 776 accctaggatcctttgggtttctcttgagagcctccgtgtagtgttttattgcttctggg 835
||||| |||||||| ||||||||| ||||||| || |||| || || | ||||||||||
Sbjct: 26888660 acccttggatccttggggtttctcctgagagcttcactgtaatgcttcactgcttctggg 26888601
Query: 836 tatttttgctccttgaagaa 855
||||| |||| |||||||||
Sbjct: 26888600 tatttctgctgcttgaagaa 26888581
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 449 agaatgttctggatctctgggtcttgcatagctttgttctg 489
|||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 26889781 agaatgttctggatttctgggtcctgcatagccttgttctg 26889741
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 26889286 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 26889236
>gb|AQ271754.1|AQ271754 nbxb0026L09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0026L09r, DNA sequence
Length = 837
Score = 196 bits (99), Expect = 2e-047
Identities = 192/223 (86%)
Strand = Plus / Minus
Query: 552 acctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctgat 611
||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct: 249 acctcctaacaccatcaagcaactcctggttgttcgggtcatgctttaggccggcctgat 190
Query: 612 aggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgtgt 671
||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 189 aggtttccagtgctttgtcatattctttcatgaaaaattggattgcacctttccttgtgt 130
Query: 672 accctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcag 731
| || || | ||| || || |||||||||| || || || |||||||| ||||||||||
Sbjct: 129 atcccttggagaatgtaggatctagttcaatgcatttttcagcatctttgagaccttcag 70
Query: 732 gcatggctcctaacttggtgtagcaggcagccctattgctgta 774
|||| ||||| | ||||| || ||||| ||||| ||||||||
Sbjct: 69 gcattgctccaagattggtataacaggcggccctgttgctgta 27
Score = 54.0 bits (27), Expect = 2e-004
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 487 ctgtctttcttgcaattcgtcctgacttatttcacctctgttagccttgtt 537
|||||||||||||||||| ||||| || | ||| |||||| ||||||||||
Sbjct: 400 ctgtctttcttgcaattcctcctggctcagttcccctctgctagccttgtt 350
>gb|AQ273370.1|AQ273370 nbxb0030C03f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030C03f, DNA sequence
Length = 567
Score = 176 bits (89), Expect = 2e-041
Identities = 98/101 (97%)
Strand = Plus / Minus
Query: 1051 tgttccttttcttgtcagtgcccttgaaatcatcttgaaatcagcacgaagttctcttcc 1110
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 565 tgttccttttcttgtcagtgcccttgagatcatcttgaaatcagcacgaagttcccttcc 506
Query: 1111 cctctccacagccttatcacagtccttgatgcattcatcgt 1151
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 cctctccacagccttatcacagtccttaatgcattcatcgt 465
>gb|AU092316.2|AU092316 AU092316 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12349, mRNA sequence
Length = 381
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 109 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 50
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 49 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 7
>dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D09, full
insert sequence
Length = 418
Score = 109 bits (55), Expect = 3e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 315 atctcatttggactatcccagcacttacaagcttctgaatcttttgcataactccagggt 374
|||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 139 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 80
Query: 375 tcttcaggtgctcctgggccgcccttgggttctcctggaaatc 417
|||| || |||||||| | ||||| ||||||||||| |||||
Sbjct: 79 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 37
>gb|AQ687389.1|AQ687389 nbxb0074P05r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0074P05r, DNA sequence
Length = 812
Score = 81.8 bits (41), Expect = 8e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 1071 cccttgaaatcatcttgaaatcagcacgaagttctcttcccctctccacagccttatcac 1130
||||||||||| || ||||| |||| | |||| ||| |||||||||||||||||||||
Sbjct: 580 cccttgaaatcctcgtgaaaacagccaggagtttcctttccctctccacagccttatcac 521
Query: 1131 agtccttgatgcattcatcgt 1151
||||||| |||||||||||||
Sbjct: 520 agtccttaatgcattcatcgt 500
>dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full
insert sequence
Length = 871
Score = 46.1 bits (23), Expect = 0.042
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 344 agcttctgaatcttttgcataactccagggttcttcaggtgctcctgggccgcccttggg 403
|||||||| ||||| ||||| ||||| |||||||| || ||| |||| || ||| | ||
Sbjct: 94 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 35
Query: 404 ttctcctggaa 414
|||||||||||
Sbjct: 34 ttctcctggaa 24
>gb|CB684359.1|CB684359 OSJNEf13M15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13M15 5', mRNA sequence
Length = 848
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 195 tctgcatcttcaagaccttcaggcaatgctccta 162
>dbj|AK069245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014O10, full
insert sequence
Length = 2826
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 757 tctgcatcttcaagaccttcaggcaatgctccta 724
>dbj|AK069675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027M09, full
insert sequence
Length = 3209
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 732 tctgcatcttcaagaccttcaggcaatgctccta 699
>dbj|AK072504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E09, full
insert sequence
Length = 1736
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 732 tctgcatcttcaagaccttcaggcaatgctccta 699
>gb|AACV01013080.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013080, whole
genome shotgun sequence
Length = 7880
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 5492 tctgcatcttcaagaccttcaggcaatgctccta 5525
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone:P0681F10
Length = 170371
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 133125 tctgcatcttcaagaccttcaggcaatgctccta 133158
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 266971 tctgcatcttcaagaccttcaggcaatgctccta 267004
>ref|XM_550348.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2826
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 757 tctgcatcttcaagaccttcaggcaatgctccta 724
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 3070116 tctgcatcttcaagaccttcaggcaatgctccta 3070149
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 3070116 tctgcatcttcaagaccttcaggcaatgctccta 3070149
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 710 tctgcatctttaagaccttcaggcatggctccta 743
|||||||||| |||||||||||||| |||||||
Sbjct: 3178940 tctgcatcttcaagaccttcaggcaatgctccta 3178973
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,958,122
Number of Sequences: 438736
Number of extensions: 1958122
Number of successful extensions: 13837
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13511
Number of HSP's gapped (non-prelim): 312
length of query: 1151
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1130
effective length of database: 2,791,206,460
effective search space: 3154063299800
effective search space used: 3154063299800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)