BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110700.1| Oryza sativa (japonica cultivar-group) cDNA... 385 e-104
ref|XM_472389.1| Oryza sativa (japonica cultivar-group), p... 385 e-104
ref|NT_107197.1| Oryza sativa (japonica cultivar-group) 385 e-104
emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromoso... 385 e-104
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 385 e-104
gb|AACV01009681.1| Oryza sativa (japonica cultivar-group) c... 335 3e-089
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 335 3e-089
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 335 3e-089
gb|AACV01008846.1| Oryza sativa (japonica cultivar-group) c... 210 1e-051
ref|XM_474657.1| Oryza sativa (japonica cultivar-group), p... 210 1e-051
ref|NT_107203.1| Oryza sativa (japonica cultivar-group) 210 1e-051
gb|CH401188.1| Oryza sativa (japonica cultivar-group) chrom... 210 1e-051
emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromoso... 210 1e-051
emb|AL662933.4|OSJN00145 Oryza sativa (japonica cultivar-gr... 210 1e-051
dbj|AK103462.1| Oryza sativa (japonica cultivar-group) cDNA... 192 2e-046
dbj|AK106087.1| Oryza sativa (japonica cultivar-group) cDNA... 192 2e-046
ref|XM_474658.1| Oryza sativa (japonica cultivar-group), p... 192 2e-046
dbj|AK120852.1| Oryza sativa (japonica cultivar-group) cDNA... 184 6e-044
gb|C71973.1|C71973 C71973 Rice panicle at flowering stage O... 90 3e-015
gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (j... 48 0.009
dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 ... 48 0.009
gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 ... 48 0.009
gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 48 0.009
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|C73859.1|C73859 C73859 Rice panicle (longer than 10cm) O... 44 0.14
gb|AU101071.1|AU101071 AU101071 Rice panicle at flowering s... 44 0.14
gb|CB653081.1|CB653081 OSJNEc03M10.f OSJNEc Oryza sativa (j... 44 0.14
gb|CF278557.1|CF278557 14ETL--04-I04.g1 Rice etiolated leaf... 44 0.14
gb|CF281026.1|CF281026 14ETL--07-O17.g1 Rice etiolated leaf... 44 0.14
gb|CV723935.1|CV723935 root--05-E02.g1 Rice root lambda pha... 44 0.14
gb|CV728855.1|CV728855 FLO--01-G09.g1 Rice flower lambda ph... 44 0.14
emb|AJ427970.1|OSA427970 Oryza sativa partial mRNA for puta... 44 0.14
dbj|AK060010.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK070201.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK100669.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK101722.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK105723.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK105938.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK107157.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK109088.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK119883.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK119891.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 ... 44 0.14
gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 ... 44 0.14
dbj|AP004274.5| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP005931.2| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01008143.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01009666.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01014859.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01016970.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01016974.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01016975.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01019243.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NM_186071.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|XM_472368.1| Oryza sativa (japonica cultivar-group), p... 44 0.14
ref|XM_479430.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|XM_479435.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 44 0.14
dbj|AP003825.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP005738.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP005452.5| Oryza sativa (japonica cultivar-group) geno... 44 0.14
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.14
gb|CH401233.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromoso... 44 0.14
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
>dbj|AK110700.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-B08, full
insert sequence
Length = 1055
Score = 385 bits (194), Expect = e-104
Identities = 493/592 (83%), Gaps = 3/592 (0%)
Strand = Plus / Plus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 255 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 314
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 315 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 374
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 375 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 434
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 435 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 494
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgt 328
|||| || |||||||| |||||| ||||| | ||| |||| ||| | ||| | |||||
Sbjct: 495 gcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgc 554
Query: 329 acgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagc 388
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 555 acgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagc 614
Query: 389 tcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||||
Sbjct: 615 tgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctgg 674
Query: 449 ccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggcca 508
||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | ||||||
Sbjct: 675 ccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggcca 734
Query: 509 acctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctgg 568
|||||||||||||| || || || ||| | ||| ||||||||||||||| ||||| |
Sbjct: 735 acctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcctcg 791
Query: 569 ccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 792 ccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 843
>ref|XM_472389.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 828
Score = 385 bits (194), Expect = e-104
Identities = 493/592 (83%), Gaps = 3/592 (0%)
Strand = Plus / Plus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 197 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 256
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 257 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 316
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 317 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 376
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 377 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 436
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgt 328
|||| || |||||||| |||||| ||||| | ||| |||| ||| | ||| | |||||
Sbjct: 437 gcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgc 496
Query: 329 acgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagc 388
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 497 acgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagc 556
Query: 389 tcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||||
Sbjct: 557 tgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctgg 616
Query: 449 ccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggcca 508
||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | ||||||
Sbjct: 617 ccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggcca 676
Query: 509 acctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctgg 568
|||||||||||||| || || || ||| | ||| ||||||||||||||| ||||| |
Sbjct: 677 acctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcctcg 733
Query: 569 ccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 734 ccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 785
>ref|NT_107197.1| Oryza sativa (japonica cultivar-group)
Length = 297308
Score = 385 bits (194), Expect = e-104
Identities = 493/592 (83%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 273743 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 273684
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 273683 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 273624
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 273623 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 273564
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 273563 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 273504
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgt 328
|||| || |||||||| |||||| ||||| | ||| |||| ||| | ||| | |||||
Sbjct: 273503 gcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgc 273444
Query: 329 acgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagc 388
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 273443 acgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagc 273384
Query: 389 tcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||||
Sbjct: 273383 tgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctgg 273324
Query: 449 ccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggcca 508
||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | ||||||
Sbjct: 273323 ccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggcca 273264
Query: 509 acctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctgg 568
|||||||||||||| || || || ||| | ||| ||||||||||||||| ||||| |
Sbjct: 273263 acctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcctcg 273207
Query: 569 ccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 273206 ccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 273155
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 54874 acgtcgccgccgccgagcgcttcctg 54899
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
complete sequence
Length = 112404
Score = 385 bits (194), Expect = e-104
Identities = 493/592 (83%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 88839 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 88780
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 88779 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 88720
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 88719 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 88660
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 88659 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 88600
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgt 328
|||| || |||||||| |||||| ||||| | ||| |||| ||| | ||| | |||||
Sbjct: 88599 gcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgc 88540
Query: 329 acgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagc 388
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 88539 acgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagc 88480
Query: 389 tcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||||
Sbjct: 88479 tgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctgg 88420
Query: 449 ccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggcca 508
||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | ||||||
Sbjct: 88419 ccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggcca 88360
Query: 509 acctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctgg 568
|||||||||||||| || || || ||| | ||| ||||||||||||||| ||||| |
Sbjct: 88359 acctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcctcg 88303
Query: 569 ccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 88302 ccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 88251
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 385 bits (194), Expect = e-104
Identities = 493/592 (83%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 20118934 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 20118875
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 20118874 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 20118815
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 20118814 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 20118755
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 20118754 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 20118695
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgt 328
|||| || |||||||| |||||| ||||| | ||| |||| ||| | ||| | |||||
Sbjct: 20118694 gcggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggccggcacggcgtcgc 20118635
Query: 329 acgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagc 388
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 20118634 acgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggagc 20118575
Query: 389 tcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||||
Sbjct: 20118574 tgggccgccacgggatccgcgtcaactgcgtgtcgcccgccgcggcggcgacgccgctgg 20118515
Query: 449 ccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggcca 508
||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | ||||||
Sbjct: 20118514 ccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtggcca 20118455
Query: 509 acctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctgg 568
|||||||||||||| || || || ||| | ||| ||||||||||||||| ||||| |
Sbjct: 20118454 acctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcctcg 20118398
Query: 569 ccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 20118397 ccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 20118346
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 5345780 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 5345721
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 5345720 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 5345661
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 5345660 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 5345601
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 5345600 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 5345543
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 5351544 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 5351485
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 5351484 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 5351425
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 5351424 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 5351365
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 5351364 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 5351305
Query: 272 g 272
|
Sbjct: 5351304 g 5351304
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 5351212 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 5351153
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 5351152 gccggggtcgccacgccgctg 5351132
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 5345448 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 5345389
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 5345388 gccgcggtcgccacgccgctg 5345368
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 5345278 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 5345219
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 5345218 cggccagaacctgcgcgtcgacggcgg 5345192
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 19900066 acgtcgccgccgccgagcgcttcctg 19900091
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 5351040 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 5350981
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 5350980 agaacctgcgcgtcgacggcgg 5350959
>gb|AACV01009681.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009681, whole
genome shotgun sequence
Length = 29302
Score = 335 bits (169), Expect = 3e-089
Identities = 492/595 (82%), Gaps = 6/595 (1%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 18274 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 18215
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 18214 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 18155
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 18154 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 18095
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 18094 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 18035
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagt-gactggcgtgtcgtcg 327
||| || |||||||| |||||| ||||| | ||| |||| || | | ||| | |||||
Sbjct: 18034 ccggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggcccggcacggcgtcg 17975
Query: 328 tacgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggag 387
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 17974 cacgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggag 17915
Query: 388 ctcggccagcacggcattcgcgt-gaactgcgt-ctcccccgcgggggtcgccacgccgc 445
|| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||
Sbjct: 17914 ctgggccgccacgggatccgcgtaaaactgcgtgttcgcccgccgcggcggcgacgccgc 17855
Query: 446 tgaccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatgg 505
|| ||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | |||
Sbjct: 17854 tggccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtgg 17795
Query: 506 ccaacctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcc 565
||||||||||||||||| || || || ||| | ||| ||||||||||||||| ||||
Sbjct: 17794 ccaacctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcc 17738
Query: 566 tggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
| |||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 17737 tcgccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 17683
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 335 bits (169), Expect = 3e-089
Identities = 492/595 (82%), Gaps = 6/595 (1%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 9867626 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 9867567
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 9867566 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 9867507
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 9867506 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 9867447
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 9867446 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 9867387
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagt-gactggcgtgtcgtcg 327
||| || |||||||| |||||| ||||| | ||| |||| || | | ||| | |||||
Sbjct: 9867386 ccggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggcccggcacggcgtcg 9867327
Query: 328 tacgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggag 387
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 9867326 cacgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggag 9867267
Query: 388 ctcggccagcacggcattcgcgt-gaactgcgt-ctcccccgcgggggtcgccacgccgc 445
|| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||
Sbjct: 9867266 ctgggccgccacgggatccgcgtaaaactgcgtgttcgcccgccgcggcggcgacgccgc 9867207
Query: 446 tgaccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatgg 505
|| ||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | |||
Sbjct: 9867206 tggccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtgg 9867147
Query: 506 ccaacctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcc 565
||||||||||||||||| || || || ||| | ||| ||||||||||||||| ||||
Sbjct: 9867146 ccaacctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcc 9867090
Query: 566 tggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
| |||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 9867089 tcgccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 9867035
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 9616054 acgtcgccgccgccgagcgcttcctg 9616079
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 335 bits (169), Expect = 3e-089
Identities = 492/595 (82%), Gaps = 6/595 (1%)
Strand = Plus / Minus
Query: 29 ccgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacc 88
||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 17214988 ccgccagctacgtgcggtgcgacgtgacgagcgaggacgacgtcgcggccgcggtggacc 17214929
Query: 89 acgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggc 148
|||||||||||| || ||| ||||||| |||||||||||||||| || || ||||
Sbjct: 17214928 acgccgtggcgaggtacgggaagctggacgtcatgttcaacaacgccgggatcggcggcg 17214869
Query: 149 cggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtga 208
|||||||| ||||| ||| ||||||| |||||| ||||| || ||||||||||||||||
Sbjct: 17214868 cggcgtgccacagcatcctggagagcaccaaggccgactttgaccgcgtgctggccgtga 17214809
Query: 209 atctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgcc 268
| ||| |||||||||||| ||||| |||||||||||||||||||||||| || || | |
Sbjct: 17214808 acctgacgggcccgttcctgggcacgaagcacgcggcgcgggtgatggtggccgcggggc 17214749
Query: 269 gcggtggctgcatcatagggacgtcgagcgtggcggcggcagt-gactggcgtgtcgtcg 327
||| || |||||||| |||||| ||||| | ||| |||| || | | ||| | |||||
Sbjct: 17214748 ccggcgggtgcatcatcgggacggcgagcctcgcgtcggcggtggcccggcacggcgtcg 17214689
Query: 328 tacgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggag 387
|||||||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 17214688 cacgcgtacacgtgcgccaagcgcgcgctggtggggctgacggagaacgcggcggcggag 17214629
Query: 388 ctcggccagcacggcattcgcgt-gaactgcgt-ctcccccgcgggggtcgccacgccgc 445
|| |||| ||||| || ||||| |||||||| || ||||| | || || |||||||
Sbjct: 17214628 ctgggccgccacgggatccgcgtaaaactgcgtgttcgcccgccgcggcggcgacgccgc 17214569
Query: 446 tgaccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatgg 505
|| ||| | ||||| ||||||| |||| ||||||||| ||| || ||||||| | |||
Sbjct: 17214568 tggccacggggtacgtgggcctggagggggaggcgttcgaggccgccatggaggccgtgg 17214509
Query: 506 ccaacctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcc 565
||||||||||||||||| || || || ||| | ||| ||||||||||||||| ||||
Sbjct: 17214508 ccaacctcaagggcgtgcgc---ctccgcgtggaggacatcgccgccgccgtgctgttcc 17214452
Query: 566 tggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacggcgg 620
| |||||||| |||||| | ||| ||||||||||||||||| || ||||||||||
Sbjct: 17214451 tcgccagcgacgacgcgcgctacgtcagcggccacaacctgctcatcgacggcgg 17214397
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 6955289 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 6955348
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 6955349 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 6955408
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 6955409 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 6955468
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 6955469 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 6955526
Score = 184 bits (93), Expect = 6e-044
Identities = 204/241 (84%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 6949525 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 6949584
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 6949585 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 6949644
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||| | |
Sbjct: 6949645 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgtacc 6949704
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 6949705 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 6949764
Query: 272 g 272
|
Sbjct: 6949765 g 6949765
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 6949857 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 6949916
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 6949917 gccggggtcgccacgccgctg 6949937
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 6955621 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 6955680
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 6955681 gccgcggtcgccacgccgctg 6955701
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 6955791 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 6955850
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 6955851 cggccagaacctgcgcgtcgacggcgg 6955877
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 16963416 acgtcgccgccgccgagcgcttcctg 16963441
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 6950029 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 6950088
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 6950089 agaacctgcgcgtcgacggcgg 6950110
>gb|AACV01008846.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008846, whole
genome shotgun sequence
Length = 16376
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 8749 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 8690
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 8689 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 8630
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 8629 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 8570
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 8569 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 8512
Score = 184 bits (93), Expect = 6e-044
Identities = 204/241 (84%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 14513 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 14454
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 14453 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 14394
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||| | |
Sbjct: 14393 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgtacc 14334
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 14333 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 14274
Query: 272 g 272
|
Sbjct: 14273 g 14273
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 14181 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 14122
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 14121 gccggggtcgccacgccgctg 14101
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 8417 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 8358
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 8357 gccgcggtcgccacgccgctg 8337
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 8247 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 8188
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 8187 cggccagaacctgcgcgtcgacggcgg 8161
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 14009 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 13950
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 13949 agaacctgcgcgtcgacggcgg 13928
>ref|XM_474657.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 825
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 194 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 253
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 254 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 313
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 314 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 373
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 374 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 431
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 526 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 585
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 586 gccgcggtcgccacgccgctg 606
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 696 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 755
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 756 cggccagaacctgcgcgtcgacggcgg 782
>ref|NT_107203.1| Oryza sativa (japonica cultivar-group)
Length = 2359875
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 46429 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 46370
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 46369 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 46310
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 46309 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 46250
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 46249 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 46192
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 52193 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 52134
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 52133 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 52074
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 52073 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 52014
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 52013 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 51954
Query: 272 g 272
|
Sbjct: 51953 g 51953
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 51861 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 51802
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 51801 gccggggtcgccacgccgctg 51781
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 46097 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 46038
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 46037 gccgcggtcgccacgccgctg 46017
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 45927 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 45868
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 45867 cggccagaacctgcgcgtcgacggcgg 45841
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 51689 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 51630
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 51629 agaacctgcgcgtcgacggcgg 51608
>gb|CH401188.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000025
genomic scaffold, whole genome shotgun sequence
Length = 1620156
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 391974 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 391915
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 391914 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 391855
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 391854 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 391795
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 391794 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 391737
Score = 184 bits (93), Expect = 6e-044
Identities = 204/241 (84%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 397738 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 397679
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 397678 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 397619
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||| | |
Sbjct: 397618 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgtacc 397559
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 397558 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 397499
Query: 272 g 272
|
Sbjct: 397498 g 397498
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 397406 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 397347
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 397346 gccggggtcgccacgccgctg 397326
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 391642 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 391583
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 391582 gccgcggtcgccacgccgctg 391562
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 391472 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 391413
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 391412 cggccagaacctgcgcgtcgacggcgg 391386
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 397234 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 397175
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 397174 agaacctgcgcgtcgacggcgg 397153
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16,
complete sequence
Length = 155702
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 46429 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 46370
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 46369 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 46310
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 46309 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 46250
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 46249 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 46192
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 52193 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 52134
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 52133 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 52074
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 52073 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 52014
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 52013 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 51954
Query: 272 g 272
|
Sbjct: 51953 g 51953
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 51861 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 51802
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 51801 gccggggtcgccacgccgctg 51781
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 46097 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 46038
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 46037 gccgcggtcgccacgccgctg 46017
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 45927 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 45868
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 45867 cggccagaacctgcgcgtcgacggcgg 45841
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 51689 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 51630
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 51629 agaacctgcgcgtcgacggcgg 51608
>emb|AL662933.4|OSJN00145 Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0096F01,
*** SEQUENCING IN PROGRESS ***, 2 ordered pieces
Length = 145262
Score = 210 bits (106), Expect = 1e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 133913 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 133854
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || |||||||| ||| ||| |||||||||||||||| ||||||| ||| |||
Sbjct: 133853 ccgtcgccacgttcgggaagctcgacgtcatgttcaacaacgccggcgtcaccggcccgc 133794
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| || |||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 133793 cgtgcttcaggatcaccgagagcaccaaggaggacttcgagcgcgtgctggccgtgaacc 133734
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 133733 tgatcggcccgttcctcggcaccaagcacgcggcgcgggtgatggcgccggcgcgccg 133676
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Minus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 139677 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 139618
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 139617 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 139558
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 139557 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 139498
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 139497 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 139438
Query: 272 g 272
|
Sbjct: 139437 g 139437
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 139345 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 139286
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 139285 gccggggtcgccacgccgctg 139265
Score = 65.9 bits (33), Expect = 4e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||| | |||| |||||| || ||||| |||||||| ||||||
Sbjct: 133581 acggagaacgcggccggcgagttgggccggcacgggatccgcgtcaactgcgtttccccc 133522
Query: 427 gcgggggtcgccacgccgctg 447
|| | ||||||||||||||||
Sbjct: 133521 gccgcggtcgccacgccgctg 133501
Score = 54.0 bits (27), Expect = 1e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 534 ggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcag 593
|||| ||||| |||||||||| | || ||||| |||||||| |||| | ||||| | ||
Sbjct: 133411 ggtggacgacatcgccgccgcggcgctgttcctcgccagcgacgacgggcggtacgtgag 133352
Query: 594 cggccacaacctgttcgtcgacggcgg 620
|||||| |||||| ||||||||||||
Sbjct: 133351 cggccagaacctgcgcgtcgacggcgg 133325
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 139173 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 139114
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 139113 agaacctgcgcgtcgacggcgg 139092
>dbj|AK103462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129M10, full
insert sequence
Length = 1265
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 284 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 343
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 344 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 403
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 404 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 463
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 464 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 523
Query: 272 g 272
|
Sbjct: 524 g 524
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 616 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 675
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 676 gccggggtcgccacgccgctg 696
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 788 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 847
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 848 agaacctgcgcgtcgacggcgg 869
>dbj|AK106087.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B04, full
insert sequence
Length = 1136
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 282 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 341
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 342 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 401
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 402 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 461
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 462 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 521
Query: 272 g 272
|
Sbjct: 522 g 522
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 614 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 673
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 674 gccggggtcgccacgccgctg 694
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 786 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 845
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 846 agaacctgcgcgtcgacggcgg 867
>ref|XM_474658.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 825
Score = 192 bits (97), Expect = 2e-046
Identities = 205/241 (85%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 197 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 256
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 257 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 316
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 317 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 376
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccgcg 271
|||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 377 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatggcgccggcgcgccgcg 436
Query: 272 g 272
|
Sbjct: 437 g 437
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 529 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 588
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 589 gccggggtcgccacgccgctg 609
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 701 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 760
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 761 agaacctgcgcgtcgacggcgg 782
>dbj|AK120852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023N20, full
insert sequence
Length = 1133
Score = 184 bits (93), Expect = 6e-044
Identities = 192/225 (85%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 279 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 338
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggccgg 151
|||| || | |||||| ||| ||| |||||||||||||||| |||||||| || |||
Sbjct: 339 ccgtcgccaggttcgggaagctcgacgtcatgttcaacaacgccggcgtcagtggcccgc 398
Query: 152 cgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaatc 211
|||||| ||| | | ||| || ||||| ||||||||||||||||| |||||||| |
Sbjct: 399 cgtgcttcaggatgagcgagtgcaccaaggaggacttcgagcgcgtgctcgccgtgaacc 458
Query: 212 tggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatgg 256
|||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 459 tggtcggcccgttcctgggcaccaagcacgcggcgcgggtgatgg 503
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 367 acggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctccccc 426
|||||||||||||| | ||||| |||| |||||| || ||||| |||||||| || |||
Sbjct: 611 acggagaacgcggccggcgagctgggccggcacgggatccgcgtcaactgcgtttcgccc 670
Query: 427 gcgggggtcgccacgccgctg 447
|| ||||||||||||||||||
Sbjct: 671 gccggggtcgccacgccgctg 691
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 783 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 842
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 843 agaacctgcgcgtcgacggcgg 864
>gb|C71973.1|C71973 C71973 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0715_1A, mRNA sequence
Length = 420
Score = 89.7 bits (45), Expect = 3e-015
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 32 ccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacg 91
|||||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||
Sbjct: 265 ccagctacgtgcactgcgacgtcacgaacgagggcgacgtcgccgccgcggtcgaccacg 324
Query: 92 ccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgt 140
|||| || | |||||| | | ||| |||||||||||||||| |||||
Sbjct: 325 ccgtcgccaggttcgggaagttcgacgtcatgttcaacaacgccggcgt 373
>gb|CB661935.1|CB661935 OSJNEd05G23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05G23 5', mRNA sequence
Length = 719
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 510 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 569
Query: 445 ctga 448
||||
Sbjct: 570 ctga 573
>dbj|AK068662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161B14, full
insert sequence
Length = 1042
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 550 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 609
Query: 445 ctga 448
||||
Sbjct: 610 ctga 613
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 752 tcagcggccacaacctcgtcgtcgacggcg 781
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
sequence
Length = 164236
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 157435 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 157494
Query: 445 ctga 448
||||
Sbjct: 157495 ctga 157498
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 157637 tcagcggccacaacctcgtcgtcgacggcg 157666
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
sequence
Length = 164352
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 162932 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 162873
Query: 445 ctga 448
||||
Sbjct: 162872 ctga 162869
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 162730 tcagcggccacaacctcgtcgtcgacggcg 162701
>gb|AACV01008216.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008216, whole
genome shotgun sequence
Length = 21283
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 17293 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 17352
Query: 445 ctga 448
||||
Sbjct: 17353 ctga 17356
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 17495 tcagcggccacaacctcgtcgtcgacggcg 17524
>ref|XM_470168.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 783
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 505 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 564
Query: 445 ctga 448
||||
Sbjct: 565 ctga 568
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 707 tcagcggccacaacctcgtcgtcgacggcg 736
>ref|XM_470312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1369
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 877 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 936
Query: 445 ctga 448
||||
Sbjct: 937 ctga 940
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 1079 tcagcggccacaacctcgtcgtcgacggcg 1108
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 1421 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 1480
Query: 445 ctga 448
||||
Sbjct: 1481 ctga 1484
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 1623 tcagcggccacaacctcgtcgtcgacggcg 1652
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 1356915 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 1356974
Query: 445 ctga 448
||||
Sbjct: 1356975 ctga 1356978
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 1357117 tcagcggccacaacctcgtcgtcgacggcg 1357146
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 293544 tggcaagcgatgaagcgaggtacatcagcg 293573
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 8424237 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 8424296
Query: 445 ctga 448
||||
Sbjct: 8424297 ctga 8424300
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 8424439 tcagcggccacaacctcgtcgtcgacggcg 8424468
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 7329803 tggcaagcgatgaagcgaggtacatcagcg 7329832
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 35690400 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 35690459
Query: 445 ctga 448
||||
Sbjct: 35690460 ctga 35690463
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 35690602 tcagcggccacaacctcgtcgtcgacggcg 35690631
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 34595966 tggcaagcgatgaagcgaggtacatcagcg 34595995
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 34789790 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 34789849
Query: 445 ctga 448
||||
Sbjct: 34789850 ctga 34789853
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 34789992 tcagcggccacaacctcgtcgtcgacggcg 34790021
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 33727609 tggcaagcgatgaagcgaggtacatcagcg 33727638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.009
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 385 gagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccg 444
|||||||| | ||||||| | |||||||||||||| ||||||| || || || ||||||
Sbjct: 34699718 gagctcgggcggcacggcgtgcgcgtgaactgcgtgtcccccggcggcgtggcgacgccg 34699777
Query: 445 ctga 448
||||
Sbjct: 34699778 ctga 34699781
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 590 tcagcggccacaacctgttcgtcgacggcg 619
|||||||||||||||| ||||||||||||
Sbjct: 34699920 tcagcggccacaacctcgtcgtcgacggcg 34699949
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 33637137 tggcaagcgatgaagcgaggtacatcagcg 33637166
>gb|C73859.1|C73859 C73859 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20829_1A, mRNA sequence
Length = 351
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 36 acgtcgccgccgccgagcgcttcctg 61
>gb|AU101071.1|AU101071 AU101071 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0715, mRNA sequence
Length = 485
Score = 44.1 bits (22), Expect = 0.14
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 539 acgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatcagcggcc 598
||||| |||||||||| | || ||||| |||||||| |||| ||||| | |||||||
Sbjct: 140 acgacatcgccgccgcggcgctgttcctcgccagcgacgacggccggtacgtgagcggcc 199
Query: 599 acaacctgttcgtcgacggcgg 620
| |||||| ||||||||||||
Sbjct: 200 agaacctgcgcgtcgacggcgg 221
>gb|CB653081.1|CB653081 OSJNEc03M10.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc03M10 5', mRNA sequence
Length = 793
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 535 gtgcacgacgtcgccgccgccg 556
||||||||||||||||||||||
Sbjct: 25 gtgcacgacgtcgccgccgccg 4
>gb|CF278557.1|CF278557 14ETL--04-I04.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--04-I04, mRNA sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 296 tggcaagcgatgaagcgaggtacatcagcg 267
>gb|CF281026.1|CF281026 14ETL--07-O17.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--07-O17, mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 361 tggcaagcgatgaagcgaggtacatcagcg 332
>gb|CV723935.1|CV723935 root--05-E02.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--05-E02, mRNA sequence
Length = 313
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 535 gtgcacgacgtcgccgccgccg 556
||||||||||||||||||||||
Sbjct: 54 gtgcacgacgtcgccgccgccg 33
>gb|CV728855.1|CV728855 FLO--01-G09.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-G09,
mRNA sequence
Length = 478
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 279 tggcaagcgatgaagcgaggtacatcagcg 250
>emb|AJ427970.1|OSA427970 Oryza sativa partial mRNA for putative potassium transporter (HAK1
gene)
Length = 2304
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 1730 acgtcgccgccgccgagcgcttcctg 1755
>dbj|AK060010.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E01, full
insert sequence
Length = 1166
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 866 tggcaagcgatgaagcgaggtacatcagcg 895
>dbj|AK070201.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042C15, full
insert sequence
Length = 1169
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 870 tggcaagcgatgaagcgaggtacatcagcg 899
>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full
insert sequence
Length = 1652
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 535 gtgcacgacgtcgccgccgccg 556
||||||||||||||||||||||
Sbjct: 519 gtgcacgacgtcgccgccgccg 498
>dbj|AK100669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112J06, full
insert sequence
Length = 2937
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 2110 acgtcgccgccgccgagcgcttcctg 2135
>dbj|AK101722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061B08, full
insert sequence
Length = 2930
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 2085 acgtcgccgccgccgagcgcttcctg 2110
>dbj|AK105723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G03, full
insert sequence
Length = 2399
Score = 44.1 bits (22), Expect = 0.14
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 542 acgtcgccgccgccgtgcgcttcctg 567
||||||||||||||| ||||||||||
Sbjct: 1553 acgtcgccgccgccgagcgcttcctg 1578
>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full
insert sequence
Length = 1415
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 535 gtgcacgacgtcgccgccgccg 556
||||||||||||||||||||||
Sbjct: 529 gtgcacgacgtcgccgccgccg 508
>dbj|AK105938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B09, full
insert sequence
Length = 1166
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 tggccagcgatgacgcgaggtacatcagcg 595
|||| |||||||| ||||||||||||||||
Sbjct: 866 tggcaagcgatgaagcgaggtacatcagcg 895
>dbj|AK107157.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E09, full
insert sequence
Length = 1033
Score = 44.1 bits (22), Expect = 0.14
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 45 ctgcgacgtcaccagcgaggacgacgtcgcggccgcggtggaccacgccgtggc 98
||||||||||||| ||||| | ||||||||||| ||||||| |||||||||
Sbjct: 297 ctgcgacgtcaccgacgaggcgcaggtcgcggccgccgtggacctcgccgtggc 350
>dbj|AK109088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H12, full
insert sequence
Length = 1193
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 583 aggtacatcagcggccacaacctgttcgtcgacggcgg 620
|||||||||| |||||| ||||| |||||||||||||
Sbjct: 833 aggtacatcaacggccataacctcgtcgtcgacggcgg 870
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,059,486
Number of Sequences: 438736
Number of extensions: 2059486
Number of successful extensions: 17792
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16882
Number of HSP's gapped (non-prelim): 904
length of query: 958
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 937
effective length of database: 2,791,206,460
effective search space: 2615360453020
effective search space used: 2615360453020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)