BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404800.2.1
(1228 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA... 145 7e-032
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 139 4e-030
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 139 4e-030
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 139 4e-030
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 139 4e-030
gb|AU101176.1|AU101176 AU101176 Rice panicle at flowering s... 133 2e-028
emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC O... 131 1e-027
gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) c... 131 1e-027
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 131 1e-027
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 131 1e-027
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 129 4e-027
gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) c... 129 4e-027
gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature lea... 123 2e-025
gb|AU165365.1|AU165365 AU165365 Rice panicle at flowering s... 98 1e-017
gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) c... 92 8e-016
gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 82 8e-013
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 82 8e-013
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 82 8e-013
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 82 8e-013
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 82 8e-013
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 82 8e-013
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 82 8e-013
dbj|AK072740.1| Oryza sativa (japonica cultivar-group) cDNA... 76 5e-011
dbj|AP005700.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|AACV01019708.1| Oryza sativa (japonica cultivar-group) c... 76 5e-011
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 76 5e-011
dbj|AP005881.3| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 76 5e-011
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 76 5e-011
gb|C73015.1|C73015 C73015 Rice panicle at flowering stage O... 74 2e-010
gb|C73022.1|C73022 C73022 Rice panicle at flowering stage O... 70 3e-009
gb|C72759.1|C72759 C72759 Rice panicle at flowering stage O... 68 1e-008
gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering s... 68 1e-008
gb|C71958.1|C71958 C71958 Rice panicle at flowering stage O... 66 5e-008
dbj|AP004994.2| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AP004862.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
dbj|AK069721.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|AACV01020695.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 60 3e-006
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
ref|NM_194620.1| Oryza sativa (japonica cultivar-group) put... 58 1e-005
gb|AU094015.1|AU094015 AU094015 Rice panicle at flowering s... 52 7e-004
gb|AU101227.1|AU101227 AU101227 Rice panicle at flowering s... 52 7e-004
gb|CF325956.1|CF325956 JMT1--04-L09.g1 AtJMT-overexpressing... 52 7e-004
gb|CV733965.1|CV733965 FLO--09-B24.g1 Rice flower lambda ph... 52 7e-004
dbj|AK069308.1| Oryza sativa (japonica cultivar-group) cDNA... 52 7e-004
gb|AACV01020697.1| Oryza sativa (japonica cultivar-group) c... 52 7e-004
ref|NM_194623.1| Oryza sativa (japonica cultivar-group) put... 50 0.003
gb|AZ135319.1|AZ135319 OSJNBb0115I04f CUGI Rice BAC Library... 46 0.045
gb|AACV01013577.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 46 0.045
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.045
gb|C26605.2|C26605 C26605 Rice callus cDNA Oryza sativa (ja... 44 0.18
dbj|AP003879.1| Oryza sativa (japonica cultivar-group) chro... 44 0.18
dbj|AK105323.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK105331.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK106168.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK108375.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK111036.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AP004591.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AACV01000328.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.18
ref|NM_192152.1| Oryza sativa (japonica cultivar-group), p... 44 0.18
ref|XM_479926.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP002816.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP002836.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
ref|NM_189629.1| Oryza sativa (japonica cultivar-group), Oz... 44 0.18
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 44 0.18
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.18
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.18
>dbj|AK068905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G03, full
insert sequence
Length = 1357
Score = 145 bits (73), Expect = 7e-032
Identities = 235/289 (81%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 917 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 858
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtctgc 496
|||||| ||||| |||||||||||||||| | ||||||||| |||||||| ||||||||
Sbjct: 857 cttgatgcaatcgtcatcgccccagtcatgtagaacccacttgaggaagacagcgtctgc 798
Query: 497 cggtggaatgctctcaaacatgtcgccagcaatatacttgacactggtgttagcgggagc 556
|||||| | ||||||||||||||||| || || |||| ||| |||| ||||||||
Sbjct: 797 cggtggcacactctcaaacatgtcgccggcgatgtactcgacgtcggtgccggcgggagc 738
Query: 557 attggcggcgacatgcgggagatccaggacactgcactggacatgcgggaacgcggtcga 616
|||||| |||| ||| ||| |||| || |||||| || | ||||||||| ||||
Sbjct: 737 cttggcgacgacgtgcccgaggtccatcacgctgcacctcacctccgggaacgccttcga 678
Query: 617 gatagccagggccgccgcgccaagccctccggcgacgtcgacaagggag 665
||| || | ||||||||||| ||||| ||||||| |||||| ||||||
Sbjct: 677 gatgacctgcgccgccgcgccgagcccgccggcgaggtcgaccagggag 629
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 284 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 225
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 224 cttggacgggtggag 210
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 127 gacttgagagccatggacttgatga 103
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 139 bits (70), Expect = 4e-030
Identities = 133/154 (86%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 62296 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggtggagcgcgaccctg 62355
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| |||||||||| ||| |||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 62356 gtgactatctgggacagagtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 62415
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | ||||||||||||||||||||
Sbjct: 62416 aggtccatggcggccttgagagccatggacttga 62449
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 31104 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 31163
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 31164 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 31223
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 31224 ccgaggtccatggcggccttgagggccacggatttgatga 31263
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 26295 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 26354
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 26355 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 26406
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 61738 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 61781
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 30531 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 30574
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 139 bits (70), Expect = 4e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 1335213 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggtggagcgcgaccctg 1335154
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| |||||||||| ||| |||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 1335153 gtgactatctgggacagagtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 1335094
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | ||||||||||||||||||||
Sbjct: 1335093 aggtccatggcggccttgagagccatggacttga 1335060
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 1076197 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 1076256
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 1076257 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 1076316
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 1076317 aggtccatggcggtcttgagggccatggacttga 1076350
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 1111968 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 1112027
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 1112028 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 1112087
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 1112088 aggtccaaggcggccttgagagccatggacttgatga 1112124
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 1366405 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 1366346
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 1366345 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 1366286
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 1366285 ccgaggtccatggcggccttgagggccacggatttgatga 1366246
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 1371214 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 1371155
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 1371154 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 1371103
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 1075657 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 1075716
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 1075717 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 1075776
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 1075777 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 1075836
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 1075837 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 1075896
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 1075897 cggctgtcggagaccat 1075913
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 1335771 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 1335728
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 1074316 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 1074375
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 1074376 cttgacacattcgtcatcaccccagtcatgcataatccact 1074416
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 1074119 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 1074178
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 1074179 cctgcttcg 1074187
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 1366978 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 1366935
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 139 bits (70), Expect = 4e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 15019551 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggtggagcgcgaccctg 15019492
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| |||||||||| ||| |||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 15019491 gtgactatctgggacagagtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 15019432
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | ||||||||||||||||||||
Sbjct: 15019431 aggtccatggcggccttgagagccatggacttga 15019398
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 14760535 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 14760594
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 14760595 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 14760654
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 14760655 aggtccatggcggtcttgagggccatggacttga 14760688
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 14796306 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 14796365
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 14796366 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 14796425
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 14796426 aggtccaaggcggccttgagagccatggacttgatga 14796462
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 15050743 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 15050684
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 15050683 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 15050624
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 15050623 ccgaggtccatggcggccttgagggccacggatttgatga 15050584
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 15055552 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 15055493
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 15055492 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 15055441
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 14759995 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 14760054
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 14760055 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 14760114
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 14760115 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 14760174
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 14760175 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 14760234
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 14760235 cggctgtcggagaccat 14760251
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 15020109 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 15020066
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 14758654 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 14758713
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 14758714 cttgacacattcgtcatcaccccagtcatgcataatccact 14758754
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 14758457 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 14758516
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 14758517 cctgcttcg 14758525
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 15051316 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 15051273
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 139 bits (70), Expect = 4e-030
Identities = 133/154 (86%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||
Sbjct: 14973834 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggtggagcgcgaccctg 14973775
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| |||||||||| ||| |||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 14973774 gtgactatctgggacagagtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 14973715
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | ||||||||||||||||||||
Sbjct: 14973714 aggtccatggcggccttgagagccatggacttga 14973681
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 14714818 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 14714877
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 14714878 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 14714937
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 14714938 aggtccatggcggtcttgagggccatggacttga 14714971
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 14750589 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 14750648
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 14750649 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 14750708
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 14750709 aggtccaaggcggccttgagagccatggacttgatga 14750745
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 15005026 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 15004967
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 15004966 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 15004907
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 15004906 ccgaggtccatggcggccttgagggccacggatttgatga 15004867
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 15009835 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 15009776
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 15009775 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 15009724
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 14714278 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 14714337
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 14714338 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 14714397
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 14714398 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 14714457
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 14714458 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 14714517
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 14714518 cggctgtcggagaccat 14714534
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 14974392 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 14974349
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 14712937 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 14712996
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 14712997 cttgacacattcgtcatcaccccagtcatgcataatccact 14713037
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 14712740 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 14712799
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 14712800 cctgcttcg 14712808
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 15005599 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 15005556
>gb|AU101176.1|AU101176 AU101176 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2190, mRNA sequence
Length = 609
Score = 133 bits (67), Expect = 2e-028
Identities = 127/147 (86%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 209 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 150
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtctgc 496
|||||| ||||| |||||||||||||||| | ||||||||| |||||||| ||||||||
Sbjct: 149 cttgatgcaatcgtcatcgccccagtcatgtagaacccacttgaggaagacagcgtctgc 90
Query: 497 cggtggaatgctctcaaacatgtcgcc 523
|||||| | |||||||||||||||||
Sbjct: 89 cggtggcacactctcaaacatgtcgcc 63
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 133207
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 58265 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 58206
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 58205 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 58146
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 58145 aggtccatggcggtcttgagggccatggacttga 58112
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 22494 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 22435
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 22434 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 22375
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 22374 aggtccaaggcggccttgagagccatggacttgatga 22338
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 58805 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 58746
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 58745 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 58686
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 58685 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 58626
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 58625 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 58566
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 58565 cggctgtcggagaccat 58549
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 60343 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 60284
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 60283 cctgcttcg 60275
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 60146 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 60087
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 60086 cttgacacattcgtcatcaccccagtcatgcataatccact 60046
>gb|AACV01024695.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024695, whole
genome shotgun sequence
Length = 15878
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 6520 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 6579
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 6580 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 6639
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 6640 aggtccatggcggtcttgagggccatggacttga 6673
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 5980 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 6039
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 6040 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 6099
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 6100 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 6159
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 6160 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 6219
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 6220 cggctgtcggagaccat 6236
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 4639 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 4698
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 4699 cttgacacattcgtcatcaccccagtcatgcataatccact 4739
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 4442 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 4501
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 4502 cctgcttcg 4510
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 240111 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 240170
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 240171 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 240230
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 240231 aggtccatggcggtcttgagggccatggacttga 240264
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 276446 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 276505
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 276506 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 276565
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 276566 aggtccaaggcggccttgagagccatggacttgatga 276602
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 509457 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 509398
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 509397 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 509338
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 509337 ccgaggtccatggcggccttgagggccacggatttgatga 509298
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 514917 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 514858
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 514857 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 514806
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 239571 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 239630
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 239631 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 239690
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 239691 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 239750
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 239751 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 239810
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 239811 cggctgtcggagaccat 239827
Score = 65.9 bits (33), Expect = 5e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||| ||||| | |||||
Sbjct: 90680 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggttgagcgggaccctg 90621
Query: 1083 g 1083
|
Sbjct: 90620 g 90620
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 91237 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 91194
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 238230 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 238289
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 238290 cttgacacattcgtcatcaccccagtcatgcataatccact 238330
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 238033 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 238092
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 238093 cctgcttcg 238101
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 510030 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 509987
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 131 bits (66), Expect = 1e-027
Identities = 132/154 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 12273170 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 12273229
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| | ||||||||||||||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 12273230 gtgagtatctggggcagggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 12273289
Query: 1143 aggtccactgcagacttgagagccatggacttga 1176
||||||| || | |||||| |||||||||||||
Sbjct: 12273290 aggtccatggcggtcttgagggccatggacttga 12273323
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 12309505 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 12309564
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 12309565 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 12309624
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 12309625 aggtccaaggcggccttgagagccatggacttgatga 12309661
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 12542516 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 12542457
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 12542456 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 12542397
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 12542396 ccgaggtccatggcggccttgagggccacggatttgatga 12542357
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Minus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 12547976 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 12547917
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 12547916 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 12547865
Score = 65.9 bits (33), Expect = 5e-008
Identities = 201/257 (78%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||
Sbjct: 12272630 aggaagacagcgtttgccggtggaatgctctcgaacatgtcgccggcgatgtactccacg 12272689
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
| |||| | ||||||| |||||| |||| || | ||| |||| || ||||||| ||
Sbjct: 12272690 ccggtgccaccgggagccttggcgacgacgtgggcgaggtccatcacgctgcacttcacc 12272749
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| | | ||| ||| | ||||||| ||| | || ||||||||||| ||
Sbjct: 12272750 tccgggaacgccctggcgatggcctgcgccgccgtgccgtggcccccggcgacgtccacc 12272809
Query: 660 agggagctcagaccccggaagacgtcgccgcactccttgacgacgatgtccatgacgaag 719
|| ||||| | | |||||| || |||||| |||| ||||||||| |||||| || | |
Sbjct: 12272810 agcgagctgatcctccggaacacatcgccgtgctccctgacgacgacgtccatcaccagg 12272869
Query: 720 ctgctgtcgcagaccat 736
| ||||||| |||||||
Sbjct: 12272870 cggctgtcggagaccat 12272886
Score = 65.9 bits (33), Expect = 5e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||| ||||| | |||||
Sbjct: 12123739 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggttgagcgggaccctg 12123680
Query: 1083 g 1083
|
Sbjct: 12123679 g 12123679
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 12124296 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 12124253
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
|||||||||||||||||| |||||| | || || |||||||| || ||||| ||||
Sbjct: 12271289 gattatcacctttcctccagcatccttagaggggatagcttttttggcattctttagtac 12271348
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| ||| || |||| ||||||||||||| || |||||
Sbjct: 12271349 cttgacacattcgtcatcaccccagtcatgcataatccact 12271389
Score = 50.1 bits (25), Expect = 0.003
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| ||||||||||| || |||| |||||||| |||||||| |||||| | |||||
Sbjct: 12271092 gggtaaacctcgatgattgaccgaaagcctagaaccggtatgatcttgtagccactaaac 12271151
Query: 240 ccagcttcg 248
|| ||||||
Sbjct: 12271152 cctgcttcg 12271160
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 12543089 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 12543046
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146519
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 123580 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 123521
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 123520 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 123461
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 123460 aggtccaaggcggccttgagagccatggacttgatga 123424
>gb|AACV01024698.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024698, whole
genome shotgun sequence
Length = 20844
Score = 129 bits (65), Expect = 4e-027
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||| | |||||
Sbjct: 8594 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggaggggtggagcgtgaccctg 8653
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 8654 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 8713
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 8714 aggtccaaggcggccttgagagccatggacttgatga 8750
>gb|AU031116.1|AU031116 AU031116 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E60846_3A,
mRNA sequence
Length = 462
Score = 123 bits (62), Expect = 2e-025
Identities = 133/157 (84%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| ||||||||||| |||||||| ||||||||||| || ||||||| | |||||
Sbjct: 261 gtgagcacgcgcatgaggcggcgcaggcacgggatcttggagggntggagcgtgaccctg 202
Query: 1083 gaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctatacca 1142
| ||||||||| || ||||||| ||| |||||| ||||||||||||||| || ||
Sbjct: 201 gtggctatctgggccatggtggcggcgccgccgtggtggtggatggcgtcggcgatgccg 142
Query: 1143 aggtccactgcagacttgagagccatggacttgatga 1179
||||||| || | |||||||||||||||||||||||
Sbjct: 141 aggtccaaggcggccttgagagccatggacttgatga 105
>gb|AU165365.1|AU165365 AU165365 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0687, mRNA sequence
Length = 538
Score = 97.6 bits (49), Expect = 1e-017
Identities = 102/120 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 120 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 61
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtctgc 496
|||||| ||||| |||||||||||||||| | |||||||| |||||||| ||||||||
Sbjct: 60 cttgatgcaatcgtcatcgccccagtcatgtagnacccacttgaggaagacagcgtctgc 1
>gb|AACV01024715.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024715, whole
genome shotgun sequence
Length = 7082
Score = 91.7 bits (46), Expect = 8e-016
Identities = 132/160 (82%), Gaps = 3/160 (1%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcgg---cc 1079
|||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct: 4369 gtgagcacgcgcatcaggcggcgcaggcacgggatcttggacgggtgcagcgacgtgacc 4310
Query: 1080 ctggaaactatctggggcagggtggcgttgccaccgtggctgtggatggcgtcggctata 1139
|||| |||||||||| |||||||||| ||| |||||| ||||||||||||||| ||
Sbjct: 4309 ctggtgactatctgggacagggtggcggcgccgccgtggtggtggatggcgtcggcgatg 4250
Query: 1140 ccaaggtccactgcagacttgagagccatggacttgatga 1179
|| ||||||| || | |||||| |||| ||| |||||||
Sbjct: 4249 ccgaggtccatggcggccttgagggccacggatttgatga 4210
Score = 48.1 bits (24), Expect = 0.011
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||| | |||||| |||||||||||
Sbjct: 4942 aggaagacagcgtttgccggtgggacgctctcgaacatgtcgcc 4899
>gb|AACV01024717.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024717, whole
genome shotgun sequence
Length = 13077
Score = 87.7 bits (44), Expect = 1e-014
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 366 accatatcaacgattatcacctttcctcctgcatccctggaaggtatagctttcttacag 425
||||| || |||| ||| ||||||||||| ||||| || || || || |||||||| |||
Sbjct: 11455 accatgtctacgactattacctttcctccagcatctctagatggaatggctttcttgcag 11514
Query: 426 ttcttgagtatcttgatacaatcagcatcgccccagtcatgcaaaacccact 477
||||| |||||||||| ||| ||| |||||||||||||||||| || |||||
Sbjct: 11515 ttctttagtatcttgacacattcatcatcgccccagtcatgcataatccact 11566
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
complete sequence
Length = 143073
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 5833 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 5774
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 5773 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 5733
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 10627 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 10686
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 10687 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 10746
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 10747 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 10806
Query: 1178 ga 1179
||
Sbjct: 10807 ga 10808
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 4848 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 4789
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 4788 cttggacgggtggag 4774
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 10097 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 10156
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 10157 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 10216
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 10217 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 10276
Query: 660 agggag 665
||||||
Sbjct: 10277 agggag 10282
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 5378 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 5319
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 5318 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 5259
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 5258 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 5199
Query: 660 agggag 665
||||||
Sbjct: 5198 agggag 5193
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 4691 gacttgagagccatggacttgatga 4667
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
complete sequence
Length = 142068
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 100076 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 100017
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 100016 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 99976
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 104870 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 104929
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 104930 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 104989
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 104990 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 105049
Query: 1178 ga 1179
||
Sbjct: 105050 ga 105051
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 99091 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 99032
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 99031 cttggacgggtggag 99017
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 104340 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 104399
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 104400 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 104459
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 104460 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 104519
Query: 660 agggag 665
||||||
Sbjct: 104520 agggag 104525
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 99621 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 99562
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 99561 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 99502
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 99501 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 99442
Query: 660 agggag 665
||||||
Sbjct: 99441 agggag 99436
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 98934 gacttgagagccatggacttgatga 98910
>gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012559, whole
genome shotgun sequence
Length = 17440
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 9031 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 8972
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 8971 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 8931
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 13800 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 13859
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 13860 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 13919
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 13920 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 13979
Query: 1178 ga 1179
||
Sbjct: 13980 ga 13981
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 13270 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 13329
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 13330 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 13389
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 13390 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 13449
Query: 660 agggag 665
||||||
Sbjct: 13450 agggag 13455
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 8576 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 8517
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 8516 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 8457
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 8456 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 8397
Query: 660 agggag 665
||||||
Sbjct: 8396 agggag 8391
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1032 cgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
||||||||||| || ||||||||||||||||||||||||||
Sbjct: 8008 cgcatgaggcggcggaggcaggggatcttggacgggtggag 7968
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 7885 gacttgagagccatggacttgatga 7861
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
Length = 898765
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 434325 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 434266
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 434265 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 434225
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 439119 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 439178
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 439179 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 439238
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 439239 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 439298
Query: 1178 ga 1179
||
Sbjct: 439299 ga 439300
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 433340 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 433281
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 433280 cttggacgggtggag 433266
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 438589 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 438648
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 438649 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 438708
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 438709 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 438768
Query: 660 agggag 665
||||||
Sbjct: 438769 agggag 438774
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 433870 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 433811
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 433810 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 433751
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 433750 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 433691
Query: 660 agggag 665
||||||
Sbjct: 433690 agggag 433685
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 433183 gacttgagagccatggacttgatga 433159
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 7797057 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 7796998
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 7796997 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 7796957
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 7801826 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 7801885
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 7801886 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 7801945
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 7801946 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 7802005
Query: 1178 ga 1179
||
Sbjct: 7802006 ga 7802007
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 7801296 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 7801355
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 7801356 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 7801415
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 7801416 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 7801475
Query: 660 agggag 665
||||||
Sbjct: 7801476 agggag 7801481
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 7796602 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 7796543
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 7796542 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 7796483
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 7796482 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 7796423
Query: 660 agggag 665
||||||
Sbjct: 7796422 agggag 7796417
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1032 cgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
||||||||||| || ||||||||||||||||||||||||||
Sbjct: 7796034 cgcatgaggcggcggaggcaggggatcttggacgggtggag 7795994
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 7795911 gacttgagagccatggacttgatga 7795887
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 25097370 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 25097311
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 25097310 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 25097270
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 25102139 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 25102198
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 25102199 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 25102258
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 25102259 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 25102318
Query: 1178 ga 1179
||
Sbjct: 25102319 ga 25102320
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 25101609 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 25101668
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 25101669 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 25101728
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 25101729 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 25101788
Query: 660 agggag 665
||||||
Sbjct: 25101789 agggag 25101794
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 25096915 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 25096856
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 25096855 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 25096796
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 25096795 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 25096736
Query: 660 agggag 665
||||||
Sbjct: 25096735 agggag 25096730
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1032 cgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
||||||||||| || ||||||||||||||||||||||||||
Sbjct: 25096347 cgcatgaggcggcggaggcaggggatcttggacgggtggag 25096307
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 25096224 gacttgagagccatggacttgatga 25096200
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 81.8 bits (41), Expect = 8e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 377 gattatcacctttcctcctgcatccctggaaggtatagctttcttacagttcttgagtat 436
||||||||||||||||||| || || | ||| ||||||||||| |||||||| | |||
Sbjct: 25365472 gattatcacctttcctcctttgtctctaggagggatagctttcttgcagttctttaatat 25365413
Query: 437 cttgatacaatcagcatcgccccagtcatgcaaaacccact 477
|||||| ||||| |||||||||||||||| | ||||||||
Sbjct: 25365412 cttgatgcaatcgtcatcgccccagtcatgtagaacccact 25365372
Score = 75.8 bits (38), Expect = 5e-011
Identities = 146/182 (80%)
Strand = Plus / Plus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 25370266 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 25370325
Query: 1058 cttggacgggtggagcgcggccctggaaactatctggggcagggtggcgttgccaccgtg 1117
||||||||||||||| || || | |||||| || || ||||||| ||| || ||
Sbjct: 25370326 cttggacgggtggagggccacctcgctggctatctcggccaaggtggcggcgccgccatg 25370385
Query: 1118 gctgtggatggcgtcggctataccaaggtccactgcagacttgagagccatggacttgat 1177
|| ||||| ||||||||| || || ||||| | || |||||||| ||||||||||||||
Sbjct: 25370386 gcggtggacggcgtcggcgatgccgaggtctagcgccgacttgagtgccatggacttgat 25370445
Query: 1178 ga 1179
||
Sbjct: 25370446 ga 25370447
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 25364487 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 25364428
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 25364427 cttggacgggtggag 25364413
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 25369736 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 25369795
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 25369796 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 25369855
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 25369856 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 25369915
Query: 660 agggag 665
||||||
Sbjct: 25369916 agggag 25369921
Score = 67.9 bits (34), Expect = 1e-008
Identities = 148/186 (79%)
Strand = Plus / Minus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgccagcaatatacttgaca 539
|||||||| |||||||||||||| | ||||||||||||||||| || || |||| |||
Sbjct: 25365017 aggaagacagcgtctgccggtggcacactctcaaacatgtcgccggcgatgtactcgacg 25364958
Query: 540 ctggtgttagcgggagcattggcggcgacatgcgggagatccaggacactgcactggaca 599
|||| |||||||| |||||| |||| ||| ||| |||| || |||||| ||
Sbjct: 25364957 tcggtgccggcgggagccttggcgacgacgtgcccgaggtccatcacgctgcacctcacc 25364898
Query: 600 tgcgggaacgcggtcgagatagccagggccgccgcgccaagccctccggcgacgtcgaca 659
| ||||||||| ||||||| || | ||||||||||| ||||| ||||||| ||||||
Sbjct: 25364897 tccgggaacgccttcgagatgacctgcgccgccgcgccgagcccgccggcgaggtcgacc 25364838
Query: 660 agggag 665
||||||
Sbjct: 25364837 agggag 25364832
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 25364330 gacttgagagccatggacttgatga 25364306
>dbj|AK072740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134H21, full
insert sequence
Length = 1466
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 1132 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 1073
Query: 235 taaatccagc 244
||||||||||
Sbjct: 1072 taaatccagc 1063
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0085I16
Length = 141701
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 24444 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 24503
Query: 235 taaatccagc 244
||||||||||
Sbjct: 24504 taaatccagc 24513
>gb|AACV01019708.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019708, whole
genome shotgun sequence
Length = 61228
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 28837 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 28896
Query: 235 taaatccagc 244
||||||||||
Sbjct: 28897 taaatccagc 28906
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 1491339 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 1491398
Query: 235 taaatccagc 244
||||||||||
Sbjct: 1491399 taaatccagc 1491408
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0057I13
Length = 156330
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 140138 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 140197
Query: 235 taaatccagc 244
||||||||||
Sbjct: 140198 taaatccagc 140207
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079
genomic scaffold, whole genome shotgun sequence
Length = 12069826
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 143081 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 143140
Query: 235 taaatccagc 244
||||||||||
Sbjct: 143141 taaatccagc 143150
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 9616892 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 9616951
Query: 235 taaatccagc 244
||||||||||
Sbjct: 9616952 taaatccagc 9616961
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| |
Sbjct: 10687826 atcaagggtaaacctcaatgattgatcgaacacccagcaccggtatgattttgtagtcac 10687885
Query: 235 taaatccagc 244
||||||||||
Sbjct: 10687886 taaatccagc 10687895
>gb|C73015.1|C73015 C73015 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2710_1A, mRNA sequence
Length = 387
Score = 73.8 bits (37), Expect = 2e-010
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
|||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 265 ggcggcgc-gaagacgccggagacggtgagcncgcgcatgaggcgncggaggcaggggat 207
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 206 cttggacgggtggag 192
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 111 gacttgagagccatggacttgatga 87
>gb|C73022.1|C73022 C73022 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2752_1A, mRNA sequence
Length = 464
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 998 ggcggcgctgaagatgccggcggctgtgagcacccgcatgaggcgacgcaggcaggggat 1057
||||||| ||||| ||||| | | |||||| | ||||||||||| || |||||||||||
Sbjct: 282 ggcggcggcgaagacgccggagacggtgagcgcgcgcatgaggcggcggaggcaggggat 223
Query: 1058 cttggacgggtggag 1072
|||||||||||||||
Sbjct: 222 cttggacgggtggag 208
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 125 gacttgagagccatggacttgatga 101
>gb|C72759.1|C72759 C72759 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2190_1A, mRNA sequence
Length = 412
Score = 67.9 bits (34), Expect = 1e-008
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
|||||| | ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 242 gtgagctcgcgcatgaggcggcggaggcaggggatcttggacgggtggag 193
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 112 gacttgagagccatggacttgatga 88
>gb|AU222582.1|AU222582 AU222582 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2710, mRNA sequence
Length = 332
Score = 67.9 bits (34), Expect = 1e-008
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
|||||| | ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 10 gtgagcgcgcgcatgaggcggcggaggcaggggatcttggacgggtggag 59
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 143 gacttgagagccatggacttgatga 167
>gb|C71958.1|C71958 C71958 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0687_1A, mRNA sequence
Length = 343
Score = 65.9 bits (33), Expect = 5e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1032 cgcatgaggcgacgcaggcaggggatcttggacgggtggag 1072
||||||||||| || ||||||||||||||||||||||||||
Sbjct: 241 cgcatgaggcggcggaggcaggggatcttggacgggtggag 201
Score = 50.1 bits (25), Expect = 0.003
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1155 gacttgagagccatggacttgatga 1179
|||||||||||||||||||||||||
Sbjct: 118 gacttgagagccatggacttgatga 94
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0052G07
Length = 156207
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 152703 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 152762
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 152763 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 152803
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 152126 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 152185
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 152186 tgaatcctgcttcaaaaaaaatctttttccactcatg 152222
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0001B11
Length = 166004
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 24284 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 24343
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 24344 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 24384
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 23707 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 23766
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 23767 tgaatcctgcttcaaaaaaaatctttttccactcatg 23803
>gb|AACV01013392.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013392, whole
genome shotgun sequence
Length = 7686
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 5358 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 5417
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 5418 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 5458
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 4781 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 4840
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 4841 tgaatcctgcttcaaaaaaaatctttttccactcatg 4877
>gb|AACV01024681.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024681, whole
genome shotgun sequence
Length = 21233
Score = 65.9 bits (33), Expect = 5e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1023 gtgagcacccgcatgaggcgacgcaggcaggggatcttggacgggtggagcgcggccctg 1082
|||||||| |||||||||||||||||||| || | ||||||||||| ||||| | |||||
Sbjct: 17848 gtgagcacgcgcatgaggcgacgcaggcatggaaccttggacgggttgagcgggaccctg 17907
Query: 1083 g 1083
|
Sbjct: 17908 g 17908
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 480 aggaagacggcgtctgccggtggaatgctctcaaacatgtcgcc 523
|||||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 17291 aggaagacagcgtttgccggtggaacactctcaaacatgtcgcc 17334
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 3009279 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 3009338
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 3009339 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 3009379
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 3008702 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 3008761
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 3008762 tgaatcctgcttcaaaaaaaatctttttccactcatg 3008798
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 7297029 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 7297088
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 7297089 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 7297129
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 7296452 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 7296511
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 7296512 tgaatcctgcttcaaaaaaaatctttttccactcatg 7296548
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 7297029 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 7297088
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 7297089 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 7297129
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 7296452 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 7296511
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 7296512 tgaatcctgcttcaaaaaaaatctttttccactcatg 7296548
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 219 atgattttgtagtcgctaaatccagcttcggaaattatctttt 261
|||||||||||| | ||||||||||||| ||||| ||| ||||
Sbjct: 9800096 atgattttgtaggcactaaatccagctttggaaaatatatttt 9800138
Score = 44.1 bits (22), Expect = 0.18
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 219 atgattttgtagtcgctaaatccagcttcggaaa 252
|||||||||||| | ||||||||||||| |||||
Sbjct: 9787102 atgattttgtaggcactaaatccagctttggaaa 9787135
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 65.9 bits (33), Expect = 5e-008
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 627 gccgccgcgccaagccctccggcgacgtcgacaagggagctcagaccccggaagacgtcg 686
|||||||| || |||| ||| |||||||||| || ||||| || || ||||| ||||||
Sbjct: 7317699 gccgccgctccgtgcccgccgccgacgtcgaccagcgagctgagcccgcggaacacgtcg 7317758
Query: 687 ccgcactccttgacgacgatgtccatgacgaagctgctgtc 727
|||| |||| | || |||||||||||||||||||| ||||
Sbjct: 7317759 ccgccctccctcaccgcgatgtccatgacgaagctggtgtc 7317799
Score = 58.0 bits (29), Expect = 1e-005
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||||||||||||||| |||| |||| || ||||| || ||| |||||||||| || |
Sbjct: 7317122 atcatgggtagacctcaatgacggatataaaacctaaaatgggcttgattttgtaatcac 7317181
Query: 235 taaatccagcttcggaaattatctttttccactcatg 271
| ||||| ||||| ||| |||||||||||||||||
Sbjct: 7317182 tgaatcctgcttcaaaaaaaatctttttccactcatg 7317218
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 219 atgattttgtagtcgctaaatccagcttcggaaattatctttt 261
|||||||||||| | ||||||||||||| ||||| ||| ||||
Sbjct: 9843047 atgattttgtaggcactaaatccagctttggaaaatatatttt 9843089
Score = 44.1 bits (22), Expect = 0.18
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 219 atgattttgtagtcgctaaatccagcttcggaaa 252
|||||||||||| | ||||||||||||| |||||
Sbjct: 9830055 atgattttgtaggcactaaatccagctttggaaa 9830088
>dbj|AK069721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028O22, full
insert sequence
Length = 1269
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 1004 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 945
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 944 tgaatccagc 935
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 1119202 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 1119261
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1119262 tgaatccagc 1119271
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || || ||||||||||||| |
Sbjct: 1142270 atcaagggtaaacctcgatgattgatcgggcacctagcaccggggtgattttgtagtcac 1142329
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1142330 tgaatccagc 1142339
>gb|AACV01020695.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020695, whole
genome shotgun sequence
Length = 31515
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 27468 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 27527
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 27528 tgaatccagc 27537
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 1124341 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 1124400
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1124401 tgaatccagc 1124410
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || || ||||||||||||| |
Sbjct: 1147409 atcaagggtaaacctcgatgattgatcgggcacctagcaccggggtgattttgtagtcac 1147468
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1147469 tgaatccagc 1147478
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 1255509 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 1255568
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1255569 tgaatccagc 1255578
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || || ||||||||||||| |
Sbjct: 1272399 atcaagggtaaacctcgatgattgatcgggcacctagcaccggggtgattttgtagtcac 1272458
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1272459 tgaatccagc 1272468
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || ||| ||||||||||||| |
Sbjct: 1255509 atcaagggtaaacctcgatgatcgatcgggcacctagcactggtgtgattttgtagtcac 1255568
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1255569 tgaatccagc 1255578
Score = 52.0 bits (26), Expect = 7e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 175 atcatgggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgc 234
|||| ||||| ||||||||||| ||||| ||||||| || || ||||||||||||| |
Sbjct: 1272399 atcaagggtaaacctcgatgattgatcgggcacctagcaccggggtgattttgtagtcac 1272458
Query: 235 taaatccagc 244
| ||||||||
Sbjct: 1272459 tgaatccagc 1272468
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,258,907
Number of Sequences: 438736
Number of extensions: 2258907
Number of successful extensions: 22614
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20938
Number of HSP's gapped (non-prelim): 1656
length of query: 1228
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1207
effective length of database: 2,791,206,460
effective search space: 3368986197220
effective search space used: 3368986197220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)