BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA... 523 e-146
ref|NM_191079.1| Oryza sativa (japonica cultivar-group), p... 523 e-146
ref|XM_475449.1| Oryza sativa (japonica cultivar-group), p... 404 e-110
gb|C73196.1|C73196 C73196 Rice panicle at flowering stage O... 335 3e-089
gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) c... 319 2e-084
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 319 2e-084
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 319 2e-084
dbj|AP003255.3| Oryza sativa (japonica cultivar-group) geno... 319 2e-084
dbj|AP003411.4| Oryza sativa (japonica cultivar-group) geno... 319 2e-084
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 319 2e-084
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 319 2e-084
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 319 2e-084
gb|AC093952.2| Oryza sativa (japonica cultivar-group) chrom... 274 1e-070
gb|AC118289.2| Oryza sativa (japonica cultivar-group) chrom... 274 1e-070
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 274 1e-070
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 274 1e-070
gb|C71978.1|C71978 C71978 Rice panicle at flowering stage O... 254 1e-064
gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering s... 246 2e-062
gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) c... 168 4e-039
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|C71990.1|C71990 C71990 Rice panicle at flowering stage O... 101 9e-019
gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering s... 98 1e-017
dbj|AP004262.2| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA 98 1e-017
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 98 1e-017
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
ref|NM_194185.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-016
gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering s... 92 8e-016
gb|C72996.1|C72996 C72996 Rice panicle at flowering stage O... 82 8e-013
gb|C72449.1|C72449 C72449 Rice panicle at flowering stage O... 74 2e-010
gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Or... 74 2e-010
gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) c... 72 8e-010
ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA 72 8e-010
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 72 8e-010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 72 8e-010
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 72 8e-010
gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering s... 68 1e-008
dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|XM_473496.1| Oryza sativa (japonica cultivar-group), p... 66 5e-008
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromoso... 66 5e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
>dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111E13, full
insert sequence
Length = 2451
Score = 523 bits (264), Expect = e-146
Identities = 446/504 (88%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 1335 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 1394
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 1395 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 1454
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 1455 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 1514
Query: 372 tcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgccagcgtccc 431
|| ||||||||||||||||||||| ||||||||| ||||| | ||||||||| | || |
Sbjct: 1515 tcaacggctacgccttcttcgccgccggcatggggccggggatatggacgccggagtgca 1574
Query: 432 ggagcacgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggt 491
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1575 ggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgaggt 1634
Query: 492 cgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaaca 551
||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 1635 cgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaaca 1694
Query: 552 tctgggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggt 611
| ||||||||| | |||||||| | |||| ||||||| ||||| | ||||||| | |||
Sbjct: 1695 tgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgaggt 1754
Query: 612 cgctcagggacgagtacaacatgccggagactag-cctccgctgcggcaaggtcgtcgga 670
||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1755 cgctccgggacgagtacaacatgccggaga-tagccctccgctgcggcaaggtcgtcggc 1813
Query: 671 ctgccaatgccgccgtcctacctc 694
||||| ||||||||||||||||||
Sbjct: 1814 ctgccgatgccgccgtcctacctc 1837
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1144 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 1203
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 1204 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 1263
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1264 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 1314
>ref|NM_191079.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1662
Score = 523 bits (264), Expect = e-146
Identities = 446/504 (88%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 1151 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 1210
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 1211 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 1270
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 1271 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 1330
Query: 372 tcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgccagcgtccc 431
|| ||||||||||||||||||||| ||||||||| ||||| | ||||||||| | || |
Sbjct: 1331 tcaacggctacgccttcttcgccgccggcatggggccggggatatggacgccggagtgca 1390
Query: 432 ggagcacgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggt 491
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1391 ggaagacgtacaacctgctggacacggtgagccggcacacgatccaggtgtacccgaggt 1450
Query: 492 cgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaaca 551
||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 1451 cgtggacggcggtgatgctgacgttcgacaacgcggggatgtggaacatcaggtccaaca 1510
Query: 552 tctgggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggt 611
| ||||||||| | |||||||| | |||| ||||||| ||||| | ||||||| | |||
Sbjct: 1511 tgtgggagaggtactacctcggggcgcagttgtacgtcagcgtggtatcgccggcgaggt 1570
Query: 612 cgctcagggacgagtacaacatgccggagactag-cctccgctgcggcaaggtcgtcgga 670
||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1571 cgctccgggacgagtacaacatgccggaga-tagccctccgctgcggcaaggtcgtcggc 1629
Query: 671 ctgccaatgccgccgtcctacctc 694
||||| ||||||||||||||||||
Sbjct: 1630 ctgccgatgccgccgtcctacctc 1653
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 960 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 1019
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 1020 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 1079
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1080 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 1130
>ref|XM_475449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 404 bits (204), Expect = e-110
Identities = 431/504 (85%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 1160 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 1219
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 1220 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 1278
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 1279 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 1338
Query: 371 atcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgccagcgtcc 430
|||||||||||||||||||||||||||| ||||| ||||| || ||| || | | |
Sbjct: 1339 ctcgacggctacgccttcttcgccgtcgggatggggccggggaagtggtcggcggaggag 1398
Query: 431 cggagcacgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctagg 490
||| ||||||||||| |||||| ||||||||||||| || ||||||||||||| |||
Sbjct: 1399 aggaagacgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgagg 1458
Query: 491 tcgtggacggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaac 550
|||||||||||| | ||| |||||||||||||||| || ||||||| | | ||||||||
Sbjct: 1459 tcgtggacggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaac 1518
Query: 551 atctgggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcgg 610
|||||||||||||| ||||||||||||||||| ||| | |||||| ||||||||| | ||
Sbjct: 1519 atctgggagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgagg 1578
Query: 611 tcgctcagggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcgga 670
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1579 tcgctccgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggc 1638
Query: 671 ctgccaatgccgccgtcctacctc 694
||||| |||||||||||||||||
Sbjct: 1639 ctgccgctgccgccgtcctacctc 1662
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 972 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 1031
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1032 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 1080
>gb|C73196.1|C73196 C73196 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359_1A, mRNA sequence
Length = 418
Score = 335 bits (169), Expect = 3e-089
Identities = 294/337 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 27 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 86
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||| ||| ||||||||
Sbjct: 87 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtnatctccgccgagt 146
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||
Sbjct: 147 tccgcaccttcatcgaggtcgtnttcgagaaccccgagaagagcatcgactccttccaca 206
Query: 372 tcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgccagcgtccc 431
|| ||||||||||||||||||||| ||| ||||| ||||| | ||||||||| | || |
Sbjct: 207 tcaacggctacgccttcttcgccgccggnatggggccggggatatggacgccggagttca 266
Query: 432 ggagcacgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggt 491
||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 267 ggaagacgtacaacctgctggacacggtgagccggcacacgattcaggtgtacccgaggt 326
Query: 492 cgtggacggcggtgatgatgacgttcgacaacgcggg 528
||||||||||||||||| | |||||||||||||||||
Sbjct: 327 cgtggacggcggtgatgctnacgttcgacaacgcggg 363
>gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002567, whole
genome shotgun sequence
Length = 43694
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 2749 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 2690
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 2689 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 2630
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 2629 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 2570
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 2569 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 2510
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 2509 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 2454
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 3057 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 2998
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 2997 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 2938
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 2937 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 2878
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 2877 tcaacggctacgccttcttcgccg 2854
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3248 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 3189
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 3188 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 3129
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3128 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 3078
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 34822534 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 34822593
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 34822594 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 34822653
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 34822654 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 34822713
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 34822714 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 34822773
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 34822774 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 34822829
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 34822226 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 34822285
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 34822286 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 34822345
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 34822346 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 34822405
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 34822406 tcaacggctacgccttcttcgccg 34822429
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 34822035 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 34822094
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 34822095 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 34822154
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 34822155 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 34822205
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 9269917 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 9269976
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 9269977 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 9270036
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 9270037 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 9270096
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 9270097 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 9270156
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 9270157 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 9270212
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 9269609 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 9269668
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 9269669 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 9269728
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 9269729 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 9269788
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 9269789 tcaacggctacgccttcttcgccg 9269812
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9269418 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 9269477
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 9269478 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 9269537
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 9269538 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 9269588
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454H12
Length = 161004
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 1036 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 1095
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 1096 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 1155
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 1156 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 1215
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 1216 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 1275
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1276 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 1331
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 728 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 787
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 788 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 847
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 848 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 907
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 908 tcaacggctacgccttcttcgccg 931
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 537 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 596
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 597 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 656
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 657 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 707
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1148D12
Length = 132060
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 57104 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 57163
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 57164 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 57223
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 57224 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 57283
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 57284 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 57343
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 57344 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 57399
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 56796 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 56855
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 56856 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 56915
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 56916 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 56975
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 56976 tcaacggctacgccttcttcgccg 56999
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 56605 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 56664
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 56665 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 56724
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 56725 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 56775
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 9090666 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 9090725
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 9090726 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 9090785
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 9090786 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 9090845
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 9090846 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 9090905
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 9090906 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 9090961
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 9090358 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 9090417
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 9090418 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 9090477
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 9090478 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 9090537
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 9090538 tcaacggctacgccttcttcgccg 9090561
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9090167 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 9090226
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 9090227 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 9090286
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 9090287 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 9090337
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 34292387 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 34292446
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 34292447 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 34292506
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 34292507 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 34292566
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 34292567 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 34292626
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 34292627 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 34292682
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 34292079 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 34292138
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 34292139 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 34292198
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 34292199 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 34292258
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 34292259 tcaacggctacgccttcttcgccg 34292282
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 34291888 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 34291947
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 34291948 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 34292007
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 34292008 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 34292058
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 319 bits (161), Expect = 2e-084
Identities = 265/297 (89%), Gaps = 2/297 (0%)
Strand = Plus / Plus
Query: 399 gcatgggcccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacgg 458
||||||| ||||| | ||||||||| | || | ||| ||||||||||| ||||||||||
Sbjct: 34741864 gcatggggccggggatatggacgccggagtgcaggaagacgtacaacctgctggacacgg 34741923
Query: 459 tgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcg 518
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 34741924 tgagccggcacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcg 34741983
Query: 519 acaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagc 578
|||||||||| ||||||| |||| |||||||||| ||||||||| | |||||||| | ||
Sbjct: 34741984 acaacgcggggatgtggaacatcaggtccaacatgtgggagaggtactacctcggggcgc 34742043
Query: 579 agctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccgg 638
|| ||||||| ||||| | ||||||| | |||||||| |||||||||||||||||||||
Sbjct: 34742044 agttgtacgtcagcgtggtatcgccggcgaggtcgctccgggacgagtacaacatgccgg 34742103
Query: 639 agactag-cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 34742104 aga-tagccctccgctgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 34742159
Score = 206 bits (104), Expect = 2e-050
Identities = 179/204 (87%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 34741556 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 34741615
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 34741616 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 34741675
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 34741676 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 34741735
Query: 372 tcgacggctacgccttcttcgccg 395
|| |||||||||||||||||||||
Sbjct: 34741736 tcaacggctacgccttcttcgccg 34741759
Score = 196 bits (99), Expect = 2e-047
Identities = 153/171 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 34741365 caaccagtggaggtcgttccgctggaacctgacggcgagcgcggcgcggcccaacccgca 34741424
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||| ||||||||||||||| || ||
Sbjct: 34741425 ggggtcctaccactacgggcagatcaacatcacgcgcaccatcaagctctgcaccagcaa 34741484
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 34741485 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 34741535
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
complete sequence
Length = 127642
Score = 274 bits (138), Expect = 1e-070
Identities = 228/258 (88%)
Strand = Plus / Minus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct: 19601 acgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtcgtgg 19542
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| |||||||||||||||| || ||||||| | | ||||||||||||||
Sbjct: 19541 acggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacatctgg 19482
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
|||||||| ||||||||||||||||| ||| | |||||| ||||||||| | ||||||||
Sbjct: 19481 gagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtcgctc 19422
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 19421 cgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccg 19362
Query: 677 atgccgccgtcctacctc 694
|||||||||||||||||
Sbjct: 19361 ctgccgccgtcctacctc 19344
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 20410 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 20351
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 20350 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 20292
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 20291 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 20232
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 20231 ctcgacggctacgccttcttcgccgtcgg 20203
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 20598 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 20539
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 20538 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 20490
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
complete sequence
Length = 137357
Score = 274 bits (138), Expect = 1e-070
Identities = 228/258 (88%)
Strand = Plus / Minus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct: 128733 acgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtcgtgg 128674
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| |||||||||||||||| || ||||||| | | ||||||||||||||
Sbjct: 128673 acggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacatctgg 128614
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
|||||||| ||||||||||||||||| ||| | |||||| ||||||||| | ||||||||
Sbjct: 128613 gagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtcgctc 128554
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 128553 cgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccg 128494
Query: 677 atgccgccgtcctacctc 694
|||||||||||||||||
Sbjct: 128493 ctgccgccgtcctacctc 128476
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 129542 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 129483
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 129482 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 129424
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 129423 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 129364
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 129363 ctcgacggctacgccttcttcgccgtcgg 129335
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 129730 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 129671
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 129670 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 129622
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 274 bits (138), Expect = 1e-070
Identities = 228/258 (88%)
Strand = Plus / Minus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct: 128733 acgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtcgtgg 128674
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| |||||||||||||||| || ||||||| | | ||||||||||||||
Sbjct: 128673 acggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacatctgg 128614
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
|||||||| ||||||||||||||||| ||| | |||||| ||||||||| | ||||||||
Sbjct: 128613 gagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtcgctc 128554
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 128553 cgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccg 128494
Query: 677 atgccgccgtcctacctc 694
|||||||||||||||||
Sbjct: 128493 ctgccgccgtcctacctc 128476
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 129542 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 129483
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 129482 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 129424
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 129423 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 129364
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 129363 ctcgacggctacgccttcttcgccgtcgg 129335
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 129730 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 129671
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 129670 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 129622
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 274 bits (138), Expect = 1e-070
Identities = 228/258 (88%)
Strand = Plus / Minus
Query: 437 acgtacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtgg 496
||||||||||| |||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct: 23738780 acgtacaacctgctggacggggtgagccggcactcggtccaggtgtacccgaggtcgtgg 23738721
Query: 497 acggcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgg 556
|||||| | ||| |||||||||||||||| || ||||||| | | ||||||||||||||
Sbjct: 23738720 acggcgatcatgctgacgttcgacaacgccgggatgtggaacgtgaggtccaacatctgg 23738661
Query: 557 gagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctc 616
|||||||| ||||||||||||||||| ||| | |||||| ||||||||| | ||||||||
Sbjct: 23738660 gagaggcactacctcggcgagcagctctacatcagcgtcgtctcgccggcgaggtcgctc 23738601
Query: 617 agggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcca 676
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 23738600 cgggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccg 23738541
Query: 677 atgccgccgtcctacctc 694
|||||||||||||||||
Sbjct: 23738540 ctgccgccgtcctacctc 23738523
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 23739589 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 23739530
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 23739529 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 23739471
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 23739470 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 23739411
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 23739410 ctcgacggctacgccttcttcgccgtcgg 23739382
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 23739777 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 23739718
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 23739717 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 23739669
>gb|C71978.1|C71978 C71978 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725_1A, mRNA sequence
Length = 356
Score = 254 bits (128), Expect = 1e-064
Identities = 235/271 (86%)
Strand = Plus / Plus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| |
Sbjct: 86 tcaagctcgccgagtacttcaacgcctcctccggggtgttcgagtacaacctcatcggcg 145
Query: 252 acgtgccgccctccaacacggcccccaccaagatggcccccaacgtcatccgcgccgagt 311
|||||||||| ||| ||| | ||| ||| | || |||||||||||| ||||||||
Sbjct: 146 acgtgccgccggccaccaccgtcccgcagaagctcgcgcccaacgtcatctccgccgagt 205
Query: 312 tccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccaca 371
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 206 tccgcaccttcatcgaggtcgtcttcgagaaccccgagaagagcatcgactccttccaca 265
Query: 372 tcgacggctacgccttcttcgccgtcggcatgggcccgggcaaatggacgccagcgtccc 431
|| ||||||||||||||||||||| ||||||||| ||||| | ||||||||| | || |
Sbjct: 266 tcaacggctacgccttcttcgccgccggcatggggccggggatatggacgccggagtnca 325
Query: 432 ggagcacgtacaacctcctggacacggtgag 462
||| ||||||||||| ||||||||||||||
Sbjct: 326 ggaagacgtacaacctgctggacacggtgag 356
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 128 aaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 19 aaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 65
>gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633, mRNA sequence
Length = 434
Score = 246 bits (124), Expect = 2e-062
Identities = 209/238 (87%)
Strand = Plus / Plus
Query: 457 ggtgagccggcacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgtt 516
||||||||||||| || ||||||||||||| ||||||||||||||| | ||| |||||||
Sbjct: 7 ggtgagccggcactcggtccaggtgtacccgaggtcgtggacggcgatcatgctgacgtt 66
Query: 517 cgacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcga 576
||||||||| || ||||||| | | |||||||||||||||||||||| ||||| |||||
Sbjct: 67 cgacaacgccgggatgtggaacgtgaggtccaacatctgggagaggcactacctnggcga 126
Query: 577 gcagctgtacgtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgcc 636
|||||| ||| | |||||| ||||||||| | |||||||| |||||||||||||||| ||
Sbjct: 127 gcagctctacatcagcgtcgtctcgccggcgaggtcgctccgggacgagtacaacatncc 186
Query: 637 ggagactagcctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 187 ggagaacgccctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctacctc 244
>gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012443,
whole genome shotgun sequence
Length = 7078
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 759 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 700
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 699 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 641
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 640 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 581
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 580 ctcgacggctacgccttcttcgccgtcgg 552
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 947 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 888
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 887 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 839
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 6128283 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 6128224
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 6128223 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 6128165
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 6128164 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 6128105
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 6128104 ctcgacggctacgccttcttcgccgtcgg 6128076
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 6128471 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 6128412
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 6128411 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 6128363
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 168 bits (85), Expect = 4e-039
Identities = 180/209 (86%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 192 tcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacctcatcgggg 251
|||||||||||||||||||||||| || ||||||||| |||| |||||||| || |
Sbjct: 23428596 tcaagctcgccgagtacttcaacgtcaccgacggcgtcttcaggtacaaccagatgaccg 23428537
Query: 252 acgtgccgccctccaacac-ggcccccaccaagatggcccccaacgtcatccgcgccgag 310
||||||||||| || || ||||||| ||| | | | ||||||||||||| |||||||
Sbjct: 23428536 acgtgccgcccgccgtcaatggccccctccacg-tcgtccccaacgtcatcaccgccgag 23428478
Query: 311 ttccgcaccttcatcgaggtggtcttcgagaaccccgagaagagcatcgacaccatccac 370
|||||||||||||||||| | ||||||||||||||||||||||||| ||| || |||||
Sbjct: 23428477 ttccgcaccttcatcgagatcatcttcgagaaccccgagaagagcatggactccgtccac 23428418
Query: 371 atcgacggctacgccttcttcgccgtcgg 399
||||||||||||||||||||||||||||
Sbjct: 23428417 ctcgacggctacgccttcttcgccgtcgg 23428389
Score = 137 bits (69), Expect = 2e-029
Identities = 99/109 (90%)
Strand = Plus / Minus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 23428784 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 23428725
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctc 112
|||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 23428724 ggggtcctaccactacggccagatcaacatcacgcgcaccatcaggctc 23428676
>gb|C71990.1|C71990 C71990 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0745_1A, mRNA sequence
Length = 257
Score = 101 bits (51), Expect = 9e-019
Identities = 141/171 (82%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
|||||| || ||||| |||||||||||||| ||||| ||||||||| |||| |||||
Sbjct: 58 caaccattggaggtcgttccgctggaacctnacggcgagcgcggcggntgccaanccgca 117
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|| | ||||||||||| |||||||||||||| | |||||||||||| || ||
Sbjct: 118 ggttnc-taccactacgggcagatcaacatcacgtgtaccatcaagctctgcaccagcaa 176
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgt 174
|| ||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 177 ggggaaggtggacggcaaggagcggttcgccctcaacggcgtgtcgcacgt 227
>gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1615, mRNA sequence
Length = 383
Score = 97.6 bits (49), Expect = 1e-017
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 618 gggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgccaa 677
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 3 gggacgagtacaacatgccggagaacgccctccgctgcggcaaggtcgtcggcctgccgc 62
Query: 678 tgccgccgtcctacctc 694
|||||||||||||||||
Sbjct: 63 tgccgccgtcctacctc 79
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0022B05
Length = 151317
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 53183 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 53242
Query: 74 cactacggc 82
|||||||||
Sbjct: 53243 cactacggc 53251
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 60801 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 60860
Query: 80 ggc 82
|||
Sbjct: 60861 ggc 60863
>dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C13, full
insert sequence
Length = 1967
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1004 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1063
Query: 74 cactacggc 82
|||||||||
Sbjct: 1064 cactacggc 1072
>gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015064, whole
genome shotgun sequence
Length = 187699
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 122734 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 122793
Query: 74 cactacggc 82
|||||||||
Sbjct: 122794 cactacggc 122802
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 130352 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 130411
Query: 80 ggc 82
|||
Sbjct: 130412 ggc 130414
>ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1968
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1004 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1063
Query: 74 cactacggc 82
|||||||||
Sbjct: 1064 cactacggc 1072
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1049532 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1049591
Query: 74 cactacggc 82
|||||||||
Sbjct: 1049592 cactacggc 1049600
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1057150 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 1057209
Query: 80 ggc 82
|||
Sbjct: 1057210 ggc 1057212
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055 genomic
scaffold, whole genome shotgun sequence
Length = 1431804
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1098324 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1098383
Query: 74 cactacggc 82
|||||||||
Sbjct: 1098384 cactacggc 1098392
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1105942 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 1106001
Query: 80 ggc 82
|||
Sbjct: 1106002 ggc 1106004
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1098324 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1098383
Query: 74 cactacggc 82
|||||||||
Sbjct: 1098384 cactacggc 1098392
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1105942 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 1106001
Query: 80 ggc 82
|||
Sbjct: 1106002 ggc 1106004
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 18395550 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 18395605
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 18397007 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 18397062
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 18395892 cacatcgacggctacgccttct 18395913
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 97.6 bits (49), Expect = 1e-017
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 14 aggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtac 73
||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 1055595 aggtcgttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttc 1055654
Query: 74 cactacggc 82
|||||||||
Sbjct: 1055655 cactacggc 1055663
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 1063213 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 1063272
Query: 80 ggc 82
|||
Sbjct: 1063273 ggc 1063275
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 19443327 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 19443382
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 19444784 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 19444839
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 19443669 cacatcgacggctacgccttct 19443690
>ref|NM_194185.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 255
Score = 93.7 bits (47), Expect = 2e-016
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 20 ttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactac 79
||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct: 7 ttccggtggaacctgacggcgagcgcggcgaggcccaacccgcaggggtcgttccactac 66
Query: 80 ggc 82
|||
Sbjct: 67 ggc 69
>gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725, mRNA sequence
Length = 674
Score = 91.7 bits (46), Expect = 8e-016
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 609 ggtcgctcagggacgagtacaacatgccggagactagcc-tccgctgcggcaaggtcgtc 667
|||||||| |||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 3 ggtcgctccgggacgagtacaacatgccggaga-tagccttccgttgcggcaaggtcgtc 61
Query: 668 ggactgccaatgccgccgtcctac 691
| |||| |||||||||||||||
Sbjct: 62 gncntgccgatgccgccgtcctac 85
>gb|C72996.1|C72996 C72996 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633_1A, mRNA sequence
Length = 464
Score = 81.8 bits (41), Expect = 8e-013
Identities = 97/112 (86%), Gaps = 3/112 (2%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||||||||||| ||||| || || |||||||||||
Sbjct: 276 caaccagtggaggtcgttccggtggaacctgacggcgagcgccgcccgccccaacccgca 335
Query: 64 ggggt-cgtaccac-tacggccaga-tcaacatcacccgcaccatcaagctc 112
| | | | |||||| |||||||||| |||||||||| |||||||||| ||||
Sbjct: 336 gngttccttaccacttacggccagattcaacatcacgcgcaccatcaggctc 387
>gb|C72449.1|C72449 C72449 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1638_1A, mRNA sequence
Length = 330
Score = 73.8 bits (37), Expect = 2e-010
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| ||||| ||||| |||||| ||||||| ||||||||| ||||||||||| |
Sbjct: 248 caaccagtggaggtcgttccgntggaacttgacggcgagcgcggcgnggcccaacccg-a 306
Query: 64 ggggtcgtaccactacgg 81
||| || ||||| |||||
Sbjct: 307 gggttcctaccantacgg 324
>gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1911, mRNA sequence
Length = 212
Score = 73.8 bits (37), Expect = 2e-010
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 646 cctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
|||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 11 cctccgctgcggcaaggtcgtcggcctgccgctgccgccgtcctacctc 59
>gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016348, whole
genome shotgun sequence
Length = 5078
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 1867 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 1812
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 410 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 355
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 1525 cacatcgacggctacgccttct 1504
>ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1692
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 1027 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 1082
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 1519 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 1574
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 1369 cacatcgacggctacgccttct 1390
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409B11
Length = 168354
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 132865 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 132920
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 134322 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 134377
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 133207 cacatcgacggctacgccttct 133228
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 7066402 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 7066457
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 7067859 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 7067914
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 7066744 cacatcgacggctacgccttct 7066765
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 71.9 bits (36), Expect = 8e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 4996111 tggaacttgacggcgagcgggccgcggccgaacccgcaggggtcgtaccactacgg 4996166
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 518 gacaacgcgggcatgtggagcatccggtccaacatctgggagaggcagtacctcgg 573
||||||| ||||||||||| | ||||||| | | ||||| |||||||||||||||
Sbjct: 4997568 gacaacgtgggcatgtggaacgtccggtcggagaactgggcgaggcagtacctcgg 4997623
Score = 44.1 bits (22), Expect = 0.17
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 4996453 cacatcgacggctacgccttct 4996474
>gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359, mRNA sequence
Length = 444
Score = 67.9 bits (34), Expect = 1e-008
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 653 tgcggcaaggtcgtcggactgccaatgccgccgtcctacctc 694
||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 tgcggcaaggtcgtcggcctgccgatgccgccgtcctacctc 42
>dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full
insert sequence
Length = 2016
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1071 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1130
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 1131 caacgtgacacgcacaatccggctcgcca 1159
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 1519 caggtgtacccgagggcgtggacggcggtg 1548
>dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A14, full
insert sequence
Length = 1977
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1078 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1137
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 1138 caacgtgacacgcacaatccggctcgcca 1166
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 1526 caggtgtacccgagggcgtggacggcggtg 1555
>gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010279, whole
genome shotgun sequence
Length = 16074
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 12714 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 12655
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 12654 caacgtgacacgcacaatccggctcgcca 12626
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 12073 caggtgtacccgagggcgtggacggcggtg 12044
>ref|XM_473496.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1665
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 987 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1046
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 1047 caacgtgacacgcacaatccggctcgcca 1075
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 1435 caggtgtacccgagggcgtggacggcggtg 1464
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1878082 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 1878023
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 1878022 caacgtgacacgcacaatccggctcgcca 1877994
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 1877443 caggtgtacccgagggcgtggacggcggtg 1877414
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 5904740 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 5904681
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 5904680 caacgtgacacgcacaatccggctcgcca 5904652
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 5904099 caggtgtacccgagggcgtggacggcggtg 5904070
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 25048839 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 25048780
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 25048779 caacgtgacacgcacaatccggctcgcca 25048751
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 25048198 caggtgtacccgagggcgtggacggcggtg 25048169
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
complete sequence
Length = 147806
Score = 65.9 bits (33), Expect = 5e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| |||| | | ||||| ||||||||||| ||||||||||||||| |||
Sbjct: 108656 gaacctgacggcgagcgggccacggccgaacccgcagggctcgtaccactacggctcgat 108597
Query: 88 caacatcacccgcaccatcaagctcgcca 116
|||| | || ||||| ||| ||||||||
Sbjct: 108596 caacgtgacacgcacaatccggctcgcca 108568
Score = 44.1 bits (22), Expect = 0.17
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 476 caggtgtaccctaggtcgtggacggcggtg 505
||||||||||| ||| ||||||||||||||
Sbjct: 108017 caggtgtacccgagggcgtggacggcggtg 107988
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,661,385
Number of Sequences: 438736
Number of extensions: 1661385
Number of successful extensions: 12804
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12211
Number of HSP's gapped (non-prelim): 575
length of query: 1195
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1174
effective length of database: 2,791,206,460
effective search space: 3276876384040
effective search space used: 3276876384040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)