BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.2
(910 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA... 353 1e-094
ref|NM_191079.1| Oryza sativa (japonica cultivar-group), p... 353 1e-094
ref|XM_475449.1| Oryza sativa (japonica cultivar-group), p... 321 4e-085
gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) c... 301 3e-079
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 301 3e-079
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 301 3e-079
dbj|AP003255.3| Oryza sativa (japonica cultivar-group) geno... 301 3e-079
dbj|AP003411.4| Oryza sativa (japonica cultivar-group) geno... 301 3e-079
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 301 3e-079
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 301 3e-079
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 301 3e-079
gb|AC093952.2| Oryza sativa (japonica cultivar-group) chrom... 285 2e-074
gb|AC118289.2| Oryza sativa (japonica cultivar-group) chrom... 285 2e-074
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 285 2e-074
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 285 2e-074
gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering s... 258 5e-066
gb|C73196.1|C73196 C73196 Rice panicle at flowering stage O... 178 3e-042
gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering s... 109 3e-021
gb|C71978.1|C71978 C71978 Rice panicle at flowering stage O... 98 1e-017
gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering s... 92 6e-016
gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Or... 78 9e-012
gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering s... 72 6e-010
gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.008
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 48 0.008
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
ref|XM_473496.1| Oryza sativa (japonica cultivar-group), p... 44 0.13
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.13
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromoso... 44 0.13
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>dbj|AK100654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111E13, full
insert sequence
Length = 2451
Score = 353 bits (178), Expect = 1e-094
Identities = 343/403 (85%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1835 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 1776
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 1775 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 1716
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 1715 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 1656
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1655 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 1596
Query: 619 ccaggaggttgtacgtactccgcgacgctgccgtccatttgccgggccccatgccgacgg 678
|||| ||||||||||| ||| || | | ||||||| | || |||||||||||| |||
Sbjct: 1595 ccagcaggttgtacgtcttcctgcactccggcgtccatatccccggccccatgccggcgg 1536
Query: 679 cgaaaaaggcntnnncntcgatgnngatgnnntcgatgctcttctcggggttctcgaagn 738
|||| ||||| | | | |||| || | |||||||||||||||||||||||||||
Sbjct: 1535 cgaagaaggcgtagccgttgatgtggaaggagtcgatgctcttctcggggttctcgaaga 1476
Query: 739 ccaccncgatgaacnnncggaactcggcgctgatgacgttggg 781
| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1475 cgacctcgatgaaggtgcggaactcggcggagatgacgttggg 1433
>ref|NM_191079.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1662
Score = 353 bits (178), Expect = 1e-094
Identities = 343/403 (85%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1651 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 1592
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 1591 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 1532
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 1531 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 1472
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1471 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 1412
Query: 619 ccaggaggttgtacgtactccgcgacgctgccgtccatttgccgggccccatgccgacgg 678
|||| ||||||||||| ||| || | | ||||||| | || |||||||||||| |||
Sbjct: 1411 ccagcaggttgtacgtcttcctgcactccggcgtccatatccccggccccatgccggcgg 1352
Query: 679 cgaaaaaggcntnnncntcgatgnngatgnnntcgatgctcttctcggggttctcgaagn 738
|||| ||||| | | | |||| || | |||||||||||||||||||||||||||
Sbjct: 1351 cgaagaaggcgtagccgttgatgtggaaggagtcgatgctcttctcggggttctcgaaga 1292
Query: 739 ccaccncgatgaacnnncggaactcggcgctgatgacgttggg 781
| ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 1291 cgacctcgatgaaggtgcggaactcggcggagatgacgttggg 1249
>ref|XM_475449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 321 bits (162), Expect = 4e-085
Identities = 339/403 (84%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1660 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 1601
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 1600 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 1541
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 1540 cgaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 1481
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||| | ||||||||||||||| ||||||||||||| || ||||||||||||| ||
Sbjct: 1480 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcaccccgt 1421
Query: 619 ccaggaggttgtacgtactccgcgacgctgccgtccatttgccgggccccatgccgacgg 678
|||| ||||||||||| ||| | | | |||| ||| || || |||||||| |||||||
Sbjct: 1420 ccagcaggttgtacgtcttcctctcctccgccgaccacttccccggccccatcccgacgg 1361
Query: 679 cgaaaaaggcntnnncntcgatgnngatgnnntcgatgctcttctcggggttctcgaagn 738
|||| ||||| | | |||| | || | || ||||||||||||||||||||||||
Sbjct: 1360 cgaagaaggcgtagccgtcgaggtggacggagtccatgctcttctcggggttctcgaaga 1301
Query: 739 ccaccncgatgaacnnncggaactcggcgctgatgacgttggg 781
| | ||||||| |||||||||||| |||||||||||||
Sbjct: 1300 tgatctcgatgaaggtgcggaactcggcggtgatgacgttggg 1258
>gb|AACV01002567.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002567, whole
genome shotgun sequence
Length = 43694
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Plus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2456 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 2515
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 2516 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 2575
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 2576 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 2635
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2636 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 2695
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 2696 ccagcaggttgtacgt 2711
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 2889 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 2948
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 2949 atgacgttggg 2959
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 34822827 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 34822768
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 34822767 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 34822708
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 34822707 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 34822648
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34822647 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 34822588
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 34822587 ccagcaggttgtacgt 34822572
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 34822394 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 34822335
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 34822334 atgacgttggg 34822324
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9270210 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 9270151
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 9270150 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 9270091
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 9270090 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 9270031
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9270030 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 9269971
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 9269970 ccagcaggttgtacgt 9269955
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 9269777 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 9269718
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 9269717 atgacgttggg 9269707
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454H12
Length = 161004
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1329 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 1270
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 1269 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 1210
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 1209 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 1150
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1149 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 1090
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 1089 ccagcaggttgtacgt 1074
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 896 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 837
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 836 atgacgttggg 826
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1148D12
Length = 132060
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 57397 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 57338
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 57337 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 57278
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 57277 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 57218
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 57217 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 57158
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 57157 ccagcaggttgtacgt 57142
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 56964 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 56905
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 56904 atgacgttggg 56894
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9090959 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 9090900
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 9090899 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 9090840
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 9090839 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 9090780
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9090779 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 9090720
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 9090719 ccagcaggttgtacgt 9090704
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 9090526 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 9090467
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 9090466 atgacgttggg 9090456
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 34292680 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 34292621
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 34292620 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 34292561
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 34292560 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 34292501
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34292500 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 34292441
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 34292440 ccagcaggttgtacgt 34292425
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 34292247 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 34292188
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 34292187 atgacgttggg 34292177
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 301 bits (152), Expect = 3e-079
Identities = 230/256 (89%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 34742157 ggtaggacggcggcatcggcaggccgacgaccttgccgcagcggagggctatctccggca 34742098
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||| | ||||| ||||||| |||| | |
Sbjct: 34742097 tgttgtactcgtcccggagcgacctcgccggcgataccacgctgacgtacaactgcgccc 34742038
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| | ||||||||| |||||||| | || | ||||||| ||||||||||||||||
Sbjct: 34742037 cgaggtagtacctctcccacatgttggacctgatgttccacatccccgcgttgtcgaacg 34741978
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34741977 tcagcatcaccgccgtccacgacctcgggtacacctggatcgtgtgccggctcaccgtgt 34741918
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 34741917 ccagcaggttgtacgt 34741902
Score = 79.8 bits (40), Expect = 2e-012
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |
Sbjct: 34741724 tcgatgctcttctcggggttctcgaagacgacctcgatgaaggtgcggaactcggcggag 34741665
Query: 771 atgacgttggg 781
|||||||||||
Sbjct: 34741664 atgacgttggg 34741654
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
complete sequence
Length = 127642
Score = 285 bits (144), Expect = 2e-074
Identities = 228/256 (89%)
Strand = Plus / Plus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 19346 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 19405
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 19406 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 19465
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 19466 cgaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 19525
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||| | ||||||||||||||| ||||||||||||| || ||||||||||||| ||
Sbjct: 19526 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcaccccgt 19585
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 19586 ccagcaggttgtacgt 19601
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 20245 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 20304
Query: 774 acgttggg 781
||||||||
Sbjct: 20305 acgttggg 20312
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
complete sequence
Length = 137357
Score = 285 bits (144), Expect = 2e-074
Identities = 228/256 (89%)
Strand = Plus / Plus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 128478 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 128537
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 128538 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 128597
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 128598 cgaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 128657
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||| | ||||||||||||||| ||||||||||||| || ||||||||||||| ||
Sbjct: 128658 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcaccccgt 128717
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 128718 ccagcaggttgtacgt 128733
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 129377 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 129436
Query: 774 acgttggg 781
||||||||
Sbjct: 129437 acgttggg 129444
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 285 bits (144), Expect = 2e-074
Identities = 228/256 (89%)
Strand = Plus / Plus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 128478 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 128537
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 128538 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 128597
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 128598 cgaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 128657
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||| | ||||||||||||||| ||||||||||||| || ||||||||||||| ||
Sbjct: 128658 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcaccccgt 128717
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 128718 ccagcaggttgtacgt 128733
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 129377 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 129436
Query: 774 acgttggg 781
||||||||
Sbjct: 129437 acgttggg 129444
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 285 bits (144), Expect = 2e-074
Identities = 228/256 (89%)
Strand = Plus / Plus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 23738525 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 23738584
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 23738585 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 23738644
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
||||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 23738645 cgaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 23738704
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgt 618
||| ||| | ||||||||||||||| ||||||||||||| || ||||||||||||| ||
Sbjct: 23738705 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcaccccgt 23738764
Query: 619 ccaggaggttgtacgt 634
|||| |||||||||||
Sbjct: 23738765 ccagcaggttgtacgt 23738780
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 23739424 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 23739483
Query: 774 acgttggg 781
||||||||
Sbjct: 23739484 acgttggg 23739491
>gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633, mRNA sequence
Length = 434
Score = 258 bits (130), Expect = 5e-066
Identities = 209/236 (88%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct: 242 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggna 183
Query: 439 tgttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgc 498
||||||||||||||| |||||||| | ||||||||| |||||| | ||| ||||||||||
Sbjct: 182 tgttgtactcgtcccggagcgacctcgccggcgagacgacgctgatgtagagctgctcgc 123
Query: 499 cgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacg 558
| ||||| |||||||||||||||||||| | ||| ||||||| || |||||||||||||
Sbjct: 122 cnaggtagtgcctctcccagatgttggacctcacgttccacatcccggcgttgtcgaacg 63
Query: 559 tcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcacc 614
||| ||| | ||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct: 62 tcagcatgatcgccgtccacgacctcgggtacacctggaccgagtgccggctcacc 7
>gb|C73196.1|C73196 C73196 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359_1A, mRNA sequence
Length = 418
Score = 178 bits (90), Expect = 3e-042
Identities = 197/239 (82%)
Strand = Plus / Minus
Query: 543 cccgcgttgtcgaacgtcatcatcaccgccgtccacgaccttgggtacacctggatcgtg 602
||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 363 cccgcgttgtcgaacgtnagcatcaccgccgtccacgacctcgggtacacctgaatcgtg 304
Query: 603 tgccggctcaccgtgtccaggaggttgtacgtactccgcgacgctgccgtccatttgccg 662
|||||||||||||||||||| ||||||||||| ||| || | | ||||||| | ||
Sbjct: 303 tgccggctcaccgtgtccagcaggttgtacgtcttcctgaactccggcgtccatatcccc 244
Query: 663 ggccccatgccgacggcgaaaaaggcntnnncntcgatgnngatgnnntcgatgctcttc 722
|||||||| ||| ||||||| ||||| | | | |||| || | ||||||||||||
Sbjct: 243 ggccccatnccggcggcgaagaaggcgtagccgttgatgtggaaggagtcgatgctcttc 184
Query: 723 tcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatgacgttggg 781
|||||||||||||| | ||| ||||||| |||||||||||| ||| ||||||||
Sbjct: 183 tcggggttctcgaanacgacctcgatgaaggtgcggaactcggcggagatnacgttggg 125
>gb|AU093980.1|AU093980 AU093980 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1615, mRNA sequence
Length = 383
Score = 109 bits (55), Expect = 3e-021
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggca 438
|||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 77 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagggcgttctccggca 18
Query: 439 tgttgtactcgtccc 453
|||||||||||||||
Sbjct: 17 tgttgtactcgtccc 3
>gb|C71978.1|C71978 C71978 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725_1A, mRNA sequence
Length = 356
Score = 97.6 bits (49), Expect = 1e-017
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 609 ctcaccgtgtccaggaggttgtacgtactccgcgacgctgccgtccatttgccgggcccc 668
|||||||||||||| ||||||||||| ||| || | | ||||||| | || ||||||
Sbjct: 356 ctcaccgtgtccagcaggttgtacgtcttcctgnactccggcgtccatatccccggcccc 297
Query: 669 atgccgacggcgaaaaaggcntnnncntcgatgnngatgnnntcgatgctcttctcgggg 728
|||||| ||||||| ||||| | | | |||| || | ||||||||||||||||||
Sbjct: 296 atgccggcggcgaagaaggcgtagccgttgatgtggaaggagtcgatgctcttctcgggg 237
Query: 729 ttctcgaagnccaccncgatgaacnnncggaactcggcgctgatgacgttggg 781
||||||||| | ||| ||||||| |||||||||||| ||||||||||||
Sbjct: 236 ttctcgaagacgacctcgatgaaggtgcggaactcggcggagatgacgttggg 184
>gb|AU101073.1|AU101073 AU101073 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0725, mRNA sequence
Length = 674
Score = 91.7 bits (46), Expect = 6e-016
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcgga-ggctggtctccggca 438
||||||||| |||||||||| | |||||||||||||||| |||| |||| |||||||||
Sbjct: 85 gtaggacggcggcatcggcangncgacgaccttgccgcaacggaaggcta-tctccggca 27
Query: 439 tgttgtactcgtccctgagcgacc 462
||||||||||||||| ||||||||
Sbjct: 26 tgttgtactcgtcccggagcgacc 3
>gb|AU312207.1|AU312207 AU312207 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1911, mRNA sequence
Length = 212
Score = 77.8 bits (39), Expect = 9e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgcagcggagg 425
|||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 57 ggtaggacggcggcagcggcaggccgacgaccttgccgcagcggagg 11
>gb|AU182505.1|AU182505 AU182505 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3359, mRNA sequence
Length = 444
Score = 71.9 bits (36), Expect = 6e-010
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 379 ggtaggacggtggcatcggcaggccgacgaccttgccgca 418
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 40 ggtaggacggcggcatcggcaggccgacgaccttgccgca 1
>gb|AACV01012443.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012443,
whole genome shotgun sequence
Length = 7078
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 594 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 653
Query: 774 acgttggg 781
||||||||
Sbjct: 654 acgttggg 661
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 6128118 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 6128177
Query: 774 acgttggg 781
||||||||
Sbjct: 6128178 acgttggg 6128185
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 65.9 bits (33), Expect = 4e-008
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 714 atgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatg 773
|||||||||||||||||||||||| | | ||||||| |||||||||||| |||||
Sbjct: 23428431 atgctcttctcggggttctcgaagatgatctcgatgaaggtgcggaactcggcggtgatg 23428490
Query: 774 acgttggg 781
||||||||
Sbjct: 23428491 acgttggg 23428498
>gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016348,
whole genome shotgun sequence
Length = 5078
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 355 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 410
>ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1692
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 1574 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 1519
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409B11
Length = 168354
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 134377 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 134322
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 7067914 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 7067859
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 4997623 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 4997568
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 18397062 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 18397007
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.008
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 498 ccgaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtc 553
||||||||||||||| ||||| | | || |||||| ||||||||||| |||||||
Sbjct: 19444839 ccgaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtc 19444784
>dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full
insert sequence
Length = 2016
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 1548 caccgccgtccacgccctcgggtacacctg 1519
>dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A14, full
insert sequence
Length = 1977
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 1555 caccgccgtccacgccctcgggtacacctg 1526
>gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010279, whole
genome shotgun sequence
Length = 16074
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 12044 caccgccgtccacgccctcgggtacacctg 12073
>ref|XM_473496.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1665
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 1464 caccgccgtccacgccctcgggtacacctg 1435
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 1877414 caccgccgtccacgccctcgggtacacctg 1877443
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 5904070 caccgccgtccacgccctcgggtacacctg 5904099
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 25048169 caccgccgtccacgccctcgggtacacctg 25048198
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
complete sequence
Length = 147806
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 107988 caccgccgtccacgccctcgggtacacctg 108017
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 566 caccgccgtccacgaccttgggtacacctg 595
|||||||||||||| ||| |||||||||||
Sbjct: 28100763 caccgccgtccacgccctcgggtacacctg 28100792
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,230,687
Number of Sequences: 438736
Number of extensions: 1230687
Number of successful extensions: 13688
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13219
Number of HSP's gapped (non-prelim): 450
length of query: 910
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 889
effective length of database: 2,791,206,460
effective search space: 2481382542940
effective search space used: 2481382542940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)