BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306429.2.1
(1175 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (j... 557 e-156
dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUG... 557 e-156
ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA 557 e-156
dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA... 541 e-151
gb|CB649206.1|CB649206 OSJNEb13A07.r OSJNEb Oryza sativa (j... 339 2e-090
dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA... 274 1e-070
ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA 274 1e-070
ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA 274 1e-070
dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chro... 240 1e-060
dbj|AP004397.3| Oryza sativa (japonica cultivar-group) geno... 240 1e-060
gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) c... 240 1e-060
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 240 1e-060
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 240 1e-060
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 240 1e-060
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 240 1e-060
gb|CB679083.1|CB679083 OSJNEf02C10.r OSJNEf Oryza sativa (j... 234 9e-059
gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (j... 224 8e-056
gb|CB669623.1|CB669623 OSJNEe02D23.r OSJNEe Oryza sativa (j... 194 8e-047
gb|CB672511.1|CB672511 OSJNEe06J08.r OSJNEe Oryza sativa (j... 153 3e-034
dbj|AP005879.3| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) c... 149 4e-033
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 149 4e-033
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 149 4e-033
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 149 4e-033
gb|AQ914234.1|AQ914234 nbeb0047J20f CUGI Rice BAC Library (... 131 9e-028
gb|AZ046773.1|AZ046773 nbeb0085D08r CUGI Rice BAC Library (... 119 4e-024
gb|CV152471.1|CV152471 LS34-S.SEQ Cold stressed rice cDNA l... 100 3e-018
dbj|AK063871.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
gb|AU085741.1|AU085741 AU085741 Rice callus Oryza sativa (j... 78 1e-011
gb|CB672510.1|CB672510 OSJNEe06J08.f OSJNEe Oryza sativa (j... 52 7e-004
gb|AU093034.1|AU093034 AU093034 Rice callus Oryza sativa (j... 50 0.003
gb|AU166961.1|AU166961 AU166961 Rice callus (2001) Oryza sa... 50 0.003
gb|CB658458.1|CB658458 OSJNEc14I03.r OSJNEc Oryza sativa (j... 50 0.003
gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (j... 50 0.003
gb|CB684794.1|CB684794 OSJNEf14K15.r OSJNEf Oryza sativa (j... 50 0.003
gb|CF276200.1|CF276200 14ETL--01-E04.g1 Rice etiolated leaf... 50 0.003
gb|CF277249.1|CF277249 14ETL--02-L11.b1 Rice etiolated leaf... 50 0.003
gb|CF280539.1|CF280539 14ETL--07-E02.g1 Rice etiolated leaf... 50 0.003
gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid c... 50 0.003
gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing t... 50 0.003
gb|CF308368.1|CF308368 ABF--02-C17.g1 ABF3-overexpressing t... 50 0.003
gb|CF308514.1|CF308514 ABF--02-F22.g1 ABF3-overexpressing t... 50 0.003
gb|CF308937.1|CF308937 ABF--02-P01.g1 ABF3-overexpressing t... 50 0.003
gb|CF309124.1|CF309124 ABF--03-D03.g1 ABF3-overexpressing t... 50 0.003
gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing t... 50 0.003
gb|CF309247.1|CF309247 ABF--03-F21.g1 ABF3-overexpressing t... 50 0.003
gb|CF309463.1|CF309463 ABF--03-K15.g1 ABF3-overexpressing t... 50 0.003
gb|CF309751.1|CF309751 ABF--04-A24.g1 ABF3-overexpressing t... 50 0.003
gb|CF309927.1|CF309927 ABF--04-F05.g1 ABF3-overexpressing t... 50 0.003
gb|CF310061.1|CF310061 ABF--04-I11.g1 ABF3-overexpressing t... 50 0.003
gb|CF310156.1|CF310156 ABF--04-K17.g1 ABF3-overexpressing t... 50 0.003
gb|CF310802.1|CF310802 ABF--05-K18.b1 ABF3-overexpressing t... 50 0.003
gb|CF310885.1|CF310885 ABF--05-M21.g1 ABF3-overexpressing t... 50 0.003
gb|CF312561.1|CF312561 ABF--08-F24.b1 ABF3-overexpressing t... 50 0.003
gb|CF313990.1|CF313990 HD--02-F13.g1 OsHDAC1-overexpressing... 50 0.003
gb|CF315220.1|CF315220 HD--04-A23.g1 OsHDAC1-overexpressing... 50 0.003
gb|CF315233.1|CF315233 HD--04-B06.g1 OsHDAC1-overexpressing... 50 0.003
gb|CF320518.1|CF320518 HD--11-H04.b1 OsHDAC1-overexpressing... 50 0.003
gb|CF320798.1|CF320798 HD--11-N03.b1 OsHDAC1-overexpressing... 50 0.003
gb|CF320976.1|CF320976 HD--12-B04.b1 OsHDAC1-overexpressing... 50 0.003
gb|CF321935.1|CF321935 HD--13-F17.g1 OsHDAC1-overexpressing... 50 0.003
dbj|AB087745.1| Oryza sativa (japonica cultivar-group) OsUG... 50 0.003
ref|XM_476032.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
gb|CB684793.1|CB684793 OSJNEf14K15.f OSJNEf Oryza sativa (j... 48 0.011
gb|CF307799.1|CF307799 ABF--01-F19.g1 ABF3-overexpressing t... 48 0.011
gb|CF311300.1|CF311300 ABF--06-H13.g1 ABF3-overexpressing t... 48 0.011
gb|CF313351.1|CF313351 HD--01-H06.g1 OsHDAC1-overexpressing... 48 0.011
gb|CF321248.1|CF321248 HD--12-H01.g1 OsHDAC1-overexpressing... 48 0.011
gb|AQ859023.1|AQ859023 nbeb0006J13f CUGI Rice BAC Library (... 44 0.17
gb|CF336872.1|CF336872 JMT--07-B11.b1 AtJMT-overexpressing ... 44 0.17
dbj|AK066249.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.17
gb|AACV01012825.1| Oryza sativa (japonica cultivar-group) c... 44 0.17
ref|NT_107222.1| Oryza sativa (japonica cultivar-group) 44 0.17
gb|AC136217.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.17
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.17
>gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 5', mRNA sequence
Length = 884
Score = 557 bits (281), Expect = e-156
Identities = 539/625 (86%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 118 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 177
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 178 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 237
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 238 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 297
Query: 181 taggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttg 240
|||||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct: 298 taggaaatgattatgcaaccagagatggtaccggggtccgagattacatccatgtggttg 357
Query: 241 accttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggt 300
|||||||||| ||||||||||| ||||||||||| || ||||||| ||| ||||||||||
Sbjct: 358 accttgctgatggacatattgcggcattgcagaaactctttgagagctccagcatagggt 417
Query: 301 gtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcat 360
||||||| |||||||||||||| || | |||||| |||||||||||||| || || ||||
Sbjct: 418 gtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcat 477
Query: 361 ttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatg 420
||||||||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||
Sbjct: 478 ttgagaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatg 537
Query: 421 cagagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaat 480
| |||||||| |||||| || |||||||||||| ||| || ||||||||||| ||||
Sbjct: 538 cggagattctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaat 597
Query: 481 acggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggct 540
|| || || || ||||| | || |||||||||||||| ||||||||||||||||| |
Sbjct: 598 ttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggat 657
Query: 541 atggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcct 600
| || |||| |||||| | ||||||||| || ||||| | ||||||| || |||
Sbjct: 658 acgggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctc 717
Query: 601 ccaagcagaatggccaccgcacaaa 625
||||||||||||||||| |||||||
Sbjct: 718 ccaagcagaatggccactgcacaaa 742
>dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative
UDP-glucose 4-epimerase, complete cds
Length = 1736
Score = 557 bits (281), Expect = e-156
Identities = 539/625 (86%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 737 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 796
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 797 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 856
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 857 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 916
Query: 181 taggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttg 240
|||||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct: 917 taggaaatgattatgcaaccagagatggtaccggggtccgagattacatccatgtggttg 976
Query: 241 accttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggt 300
|||||||||| ||||||||||| ||||||||||| || ||||||| ||| ||||||||||
Sbjct: 977 accttgctgatggacatattgcggcattgcagaaactctttgagagctccagcatagggt 1036
Query: 301 gtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcat 360
||||||| |||||||||||||| || | |||||| |||||||||||||| || || ||||
Sbjct: 1037 gtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcat 1096
Query: 361 ttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatg 420
||||||||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||
Sbjct: 1097 ttgagaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatg 1156
Query: 421 cagagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaat 480
| |||||||| |||||| || |||||||||||| ||| || ||||||||||| ||||
Sbjct: 1157 cggagattctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaat 1216
Query: 481 acggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggct 540
|| || || || ||||| | || |||||||||||||| ||||||||||||||||| |
Sbjct: 1217 ttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggat 1276
Query: 541 atggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcct 600
| || |||| |||||| | ||||||||| || ||||| | ||||||| || |||
Sbjct: 1277 acgggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctc 1336
Query: 601 ccaagcagaatggccaccgcacaaa 625
||||||||||||||||| |||||||
Sbjct: 1337 ccaagcagaatggccactgcacaaa 1361
>ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1878
Score = 557 bits (281), Expect = e-156
Identities = 539/625 (86%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 762 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 821
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 822 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 881
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 882 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 941
Query: 181 taggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttg 240
|||||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct: 942 taggaaatgattatgcaaccagagatggtaccggggtccgagattacatccatgtggttg 1001
Query: 241 accttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggt 300
|||||||||| ||||||||||| ||||||||||| || ||||||| ||| ||||||||||
Sbjct: 1002 accttgctgatggacatattgcggcattgcagaaactctttgagagctccagcatagggt 1061
Query: 301 gtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcat 360
||||||| |||||||||||||| || | |||||| |||||||||||||| || || ||||
Sbjct: 1062 gtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcat 1121
Query: 361 ttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatg 420
||||||||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||
Sbjct: 1122 ttgagaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatg 1181
Query: 421 cagagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaat 480
| |||||||| |||||| || |||||||||||| ||| || ||||||||||| ||||
Sbjct: 1182 cggagattctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaat 1241
Query: 481 acggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggct 540
|| || || || ||||| | || |||||||||||||| ||||||||||||||||| |
Sbjct: 1242 ttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggat 1301
Query: 541 atggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcct 600
| || |||| |||||| | ||||||||| || ||||| | ||||||| || |||
Sbjct: 1302 acgggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctc 1361
Query: 601 ccaagcagaatggccaccgcacaaa 625
||||||||||||||||| |||||||
Sbjct: 1362 ccaagcagaatggccactgcacaaa 1386
>dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D16, full
insert sequence
Length = 1878
Score = 541 bits (273), Expect = e-151
Identities = 537/625 (85%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 762 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 821
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 822 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 881
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| || |
Sbjct: 882 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctggcaatac 941
Query: 181 taggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttg 240
|||||||||| |||||||| ||||| || || | ||||||||||||||||||||||||||
Sbjct: 942 taggaaatgattatgcaaccagagatggtaccgaggtccgagattacatccatgtggttg 1001
Query: 241 accttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggt 300
|||||||||| ||||||||||| ||||||||||| || ||||||| ||| ||||||||||
Sbjct: 1002 accttgctgatggacatattgcggcattgcagaaactctttgagagctccagcatagggt 1061
Query: 301 gtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcat 360
||||||| |||||||||||||| || | |||||| |||||||||||||| || || ||||
Sbjct: 1062 gtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcat 1121
Query: 361 ttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatg 420
||||||||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||
Sbjct: 1122 ttgagaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatg 1181
Query: 421 cagagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaat 480
| |||||||| |||||| || |||||||||||| ||| || ||||||||||| ||||
Sbjct: 1182 cggagattctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaat 1241
Query: 481 acggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggct 540
|| || || || ||||| | || |||||||||||||| ||||||||||||||||| |
Sbjct: 1242 ttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggat 1301
Query: 541 atggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcct 600
| || |||| |||||| | ||||||||| || ||||| | ||||||| || |||
Sbjct: 1302 acgggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctc 1361
Query: 601 ccaagcagaatggccaccgcacaaa 625
||||||||||||||||| |||||||
Sbjct: 1362 ccaagcagaatggccactgcacaaa 1386
>gb|CB649206.1|CB649206 OSJNEb13A07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13A07 3', mRNA sequence
Length = 869
Score = 339 bits (171), Expect = 2e-090
Identities = 372/439 (84%)
Strand = Plus / Minus
Query: 187 atgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgaccttg 246
|||| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 869 atgattatgcaaccagagatggtaccggggtccgagattacatccatgtggttgaccttg 810
Query: 247 ctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgtgaag 306
|||| ||||||||||| ||||||||||| || ||||||| ||| ||||||||||||||||
Sbjct: 809 ctgatggacatattgcggcattgcagaaactctttgagagctccagcatagggtgtgaag 750
Query: 307 cgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttgaga 366
| |||||||||||||| || | |||||| |||||||||||||| || || ||||||||||
Sbjct: 749 catacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcatttgaga 690
Query: 367 aggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagaga 426
||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||| ||||
Sbjct: 689 aggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatgcggaga 630
Query: 427 ttctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatacggta 486
|||| |||||| || |||||||||||| ||| || ||||||||||| |||| || |
Sbjct: 629 ttctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaatttggca 570
Query: 487 ttgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatggat 546
| || || ||||| | || |||||||||||||| ||||||||||||||||| || || |
Sbjct: 569 tcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggatacgggt 510
Query: 547 cacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcctccaagc 606
||| |||||| | ||||||||| || ||||| | ||||||| || ||| ||||||
Sbjct: 509 cacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctcccaagc 450
Query: 607 agaatggccaccgcacaaa 625
||||||||||| |||||||
Sbjct: 449 agaatggccactgcacaaa 431
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full
insert sequence
Length = 1419
Score = 274 bits (138), Expect = 1e-070
Identities = 464/572 (81%), Gaps = 3/572 (0%)
Strand = Plus / Plus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 617 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 676
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 677 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 736
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 737 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 796
Query: 183 ggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgac 242
||||||||||||||||||| ||| ||||| ||||| || ||||| || ||||| |||||
Sbjct: 797 ggaaatgactatgcaacaaaagatgggacaggggtacgtgattatattcatgtagttgat 856
Query: 243 cttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgt 302
|||||||| || |||||||||||| | | |||||| ||||| | ||| | |||| |||
Sbjct: 857 cttgctgaggggcatattgctgcactacggaagctgtttgaaagctcaa---taggatgt 913
Query: 303 gaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcattt 362
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| ||||||
Sbjct: 914 caagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcattt 973
Query: 363 gagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgca 422
||||| | |||||| |||||||||||| || || ||||| | | ||||| ||||||||
Sbjct: 974 gagaaagtttctggaaagaaaatacctttggttattggtccacgacgccctggtgatgct 1033
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||||| || ||||||||||||| || | || ||||| ||||||||
Sbjct: 1034 gagattctcttttcgtcagctgctaaagcagagagagaattcaagtggaaggcaaaatat 1093
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctat 542
|| || ||||| |||||| | ||||||||||||||||| |||||||| |||| || ||
Sbjct: 1094 ggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcctttcgggtac 1153
Query: 543 ggatcacctgactctatcaagcagaatggtca 574
| || || ||||| | |||||||||||||||
Sbjct: 1154 gcctcgcccgactccaccaagcagaatggtca 1185
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1419
Score = 274 bits (138), Expect = 1e-070
Identities = 464/572 (81%), Gaps = 3/572 (0%)
Strand = Plus / Plus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 617 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 676
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 677 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 736
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 737 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 796
Query: 183 ggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgac 242
||||||||||||||||||| ||| ||||| ||||| || ||||| || ||||| |||||
Sbjct: 797 ggaaatgactatgcaacaaaagatgggacaggggtacgtgattatattcatgtagttgat 856
Query: 243 cttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgt 302
|||||||| || |||||||||||| | | |||||| ||||| | ||| | |||| |||
Sbjct: 857 cttgctgaggggcatattgctgcactacggaagctgtttgaaagctcaa---taggatgt 913
Query: 303 gaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcattt 362
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| ||||||
Sbjct: 914 caagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcattt 973
Query: 363 gagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgca 422
||||| | |||||| |||||||||||| || || ||||| | | ||||| ||||||||
Sbjct: 974 gagaaagtttctggaaagaaaatacctttggttattggtccacgacgccctggtgatgct 1033
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||||| || ||||||||||||| || | || ||||| ||||||||
Sbjct: 1034 gagattctcttttcgtcagctgctaaagcagagagagaattcaagtggaaggcaaaatat 1093
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctat 542
|| || ||||| |||||| | ||||||||||||||||| |||||||| |||| || ||
Sbjct: 1094 ggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcctttcgggtac 1153
Query: 543 ggatcacctgactctatcaagcagaatggtca 574
| || || ||||| | |||||||||||||||
Sbjct: 1154 gcctcgcccgactccaccaagcagaatggtca 1185
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1110
Score = 274 bits (138), Expect = 1e-070
Identities = 464/572 (81%), Gaps = 3/572 (0%)
Strand = Plus / Plus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 532 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 591
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 592 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 651
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 652 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 711
Query: 183 ggaaatgactatgcaacaagagacgggactggggtccgagattacatccatgtggttgac 242
||||||||||||||||||| ||| ||||| ||||| || ||||| || ||||| |||||
Sbjct: 712 ggaaatgactatgcaacaaaagatgggacaggggtacgtgattatattcatgtagttgat 771
Query: 243 cttgctgacggacatattgctgcattgcagaagctttttgagaactctagcatagggtgt 302
|||||||| || |||||||||||| | | |||||| ||||| | ||| | |||| |||
Sbjct: 772 cttgctgaggggcatattgctgcactacggaagctgtttgaaagctcaa---taggatgt 828
Query: 303 gaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcattt 362
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| ||||||
Sbjct: 829 caagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcattt 888
Query: 363 gagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgca 422
||||| | |||||| |||||||||||| || || ||||| | | ||||| ||||||||
Sbjct: 889 gagaaagtttctggaaagaaaatacctttggttattggtccacgacgccctggtgatgct 948
Query: 423 gagattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatac 482
|||||||| ||||| || ||||||||||||| || | || ||||| ||||||||
Sbjct: 949 gagattctcttttcgtcagctgctaaagcagagagagaattcaagtggaaggcaaaatat 1008
Query: 483 ggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctat 542
|| || ||||| |||||| | ||||||||||||||||| |||||||| |||| || ||
Sbjct: 1009 ggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcctttcgggtac 1068
Query: 543 ggatcacctgactctatcaagcagaatggtca 574
| || || ||||| | |||||||||||||||
Sbjct: 1069 gcctcgcccgactccaccaagcagaatggtca 1100
>dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0508B09, ***
SEQUENCING IN PROGRESS ***
Length = 144557
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 121645 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 121586
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 121585 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 121526
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 121525 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 121466
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 121465 taggaaatgattatgcaaccagaga 121441
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 120697 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 120638
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 120637 actctttgagagctccagcatagg 120614
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 120222 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 120163
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 120162 ggcatttgagaaggcttctgggaag 120138
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 119651 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 119592
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 119591 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 119533
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 132899 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 132840
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 132839 agaaggcttctgggaag 132823
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 119854 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 119795
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 119794 tacctgctaaagcagagaaggaactcaactggaa 119761
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0436B06
Length = 148947
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 42098 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 42039
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 42038 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 41979
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 41978 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 41919
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 41918 taggaaatgattatgcaaccagaga 41894
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 41150 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 41091
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 41090 actctttgagagctccagcatagg 41067
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 40675 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 40616
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 40615 ggcatttgagaaggcttctgggaag 40591
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 40104 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 40045
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 40044 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 39986
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 53353 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 53294
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 53293 agaaggcttctgggaag 53277
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 40307 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 40248
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 40247 tacctgctaaagcagagaaggaactcaactggaa 40214
>gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018313, whole
genome shotgun sequence
Length = 27159
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 15343 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 15284
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 15283 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 15224
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 15223 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 15164
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 15163 taggaaatgattatgcaaccagaga 15139
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 14395 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 14336
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 14335 actctttgagagctccagcatagg 14312
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 13920 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 13861
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 13860 ggcatttgagaaggcttctgggaag 13836
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 13349 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 13290
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 13289 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 13231
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 26598 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 26539
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 26538 agaaggcttctgggaag 26522
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 13552 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 13493
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 13492 tacctgctaaagcagagaaggaactcaactggaa 13459
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 17327361 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 17327302
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 17327301 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 17327242
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 17327241 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 17327182
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 17327181 taggaaatgattatgcaaccagaga 17327157
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 17326413 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 17326354
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 17326353 actctttgagagctccagcatagg 17326330
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 17325938 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 17325879
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 17325878 ggcatttgagaaggcttctgggaag 17325854
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 17325367 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 17325308
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 17325307 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 17325249
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 17338616 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 17338557
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 17338556 agaaggcttctgggaag 17338540
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 17325570 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 17325511
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 17325510 tacctgctaaagcagagaaggaactcaactggaa 17325477
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 8794373 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 8794314
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 8794313 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 8794254
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 8794253 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 8794194
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 8794193 taggaaatgattatgcaaccagaga 8794169
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 8793425 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 8793366
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 8793365 actctttgagagctccagcatagg 8793342
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 8792950 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 8792891
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 8792890 ggcatttgagaaggcttctgggaag 8792866
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 8792379 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 8792320
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 8792319 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 8792261
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 8805628 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 8805569
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 8805568 agaaggcttctgggaag 8805552
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 8792582 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 8792523
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 8792522 tacctgctaaagcagagaaggaactcaactggaa 8792489
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 16396379 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 16396320
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 16396319 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 16396260
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 16396259 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 16396200
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 16396199 taggaaatgattatgcaaccagaga 16396175
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 16395431 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 16395372
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 16395371 actctttgagagctccagcatagg 16395348
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 16394956 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 16394897
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 16394896 ggcatttgagaaggcttctgggaag 16394872
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 16394385 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 16394326
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 16394325 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 16394267
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 16407634 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 16407575
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 16407574 agaaggcttctgggaag 16407558
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 16394588 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 16394529
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 16394528 tacctgctaaagcagagaaggaactcaactggaa 16394495
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 240 bits (121), Expect = 1e-060
Identities = 184/205 (89%)
Strand = Plus / Minus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 17565448 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 17565389
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 17565388 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 17565329
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 17565328 acaatcttatgccttatgttcagcaagttgctgttggcaggaggccagctctgacaatac 17565269
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 17565268 taggaaatgattatgcaaccagaga 17565244
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 17564500 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 17564441
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 17564440 actctttgagagctccagcatagg 17564417
Score = 105 bits (53), Expect = 5e-020
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 296 agggtgtgaagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaa 355
|||||||||||| |||||||||||||| || | |||||| |||||||||||||| || ||
Sbjct: 17564025 agggtgtgaagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaa 17563966
Query: 356 agcatttgagaaggcttctgggaag 380
||||||||||||||||||||||||
Sbjct: 17563965 ggcatttgagaaggcttctgggaag 17563941
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Minus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 17563454 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 17563395
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 17563394 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 17563336
Score = 73.8 bits (37), Expect = 2e-010
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| ||||||||| |||| || | |||||| ||||||||||||| || || |||||||
Sbjct: 17576703 aagcatacaaccttagaactggtaaaggtacttctgtgctggagacagtgaaggcatttg 17576644
Query: 364 agaaggcttctgggaag 380
|||||||||||||||||
Sbjct: 17576643 agaaggcttctgggaag 17576627
Score = 52.0 bits (26), Expect = 7e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 379 agaaaatacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcag 438
||||||| ||||||||| |||| ||| ||||| |||||||| |||||||| ||||||
Sbjct: 17563657 agaaaattcctctgattattggcccaagacgccctggtgatgcggagattctattttcat 17563598
Query: 439 agactactaaagcagagagggagcttaactggaa 472
|| |||||||||||| ||| || ||||||||
Sbjct: 17563597 tacctgctaaagcagagaaggaactcaactggaa 17563564
>gb|CB679083.1|CB679083 OSJNEf02C10.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02C10 3', mRNA sequence
Length = 792
Score = 234 bits (118), Expect = 9e-059
Identities = 301/362 (83%)
Strand = Plus / Minus
Query: 264 gcattgcagaagctttttgagaactctagcatagggtgtgaagcgtacaaccttggaacc 323
||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 792 gcattgcagaaactctttgagagctccagcatagggtgtgaagcatacaaccttggaact 733
Query: 324 ggaagaggtacatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaa 383
|| | |||||| |||||||||||||| || || |||||||||||||||| ||||||||||
Sbjct: 732 ggtaaaggtacctctgtgctggagatagtcaaggcatttgagaaggcttttgggaagaaa 673
Query: 384 atacctctgatttttggtgaaaggcgcccaggtgatgcagagattctgttttcagagact 443
|| ||||||||| |||| ||| ||||| |||||||| |||||||| |||||| ||
Sbjct: 672 attcctctgattattggcccaagacgccctggtgatgcggagattctattttcattacct 613
Query: 444 actaaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgc 503
|||||||||||| ||| || ||||||||||| |||| || || || || ||||| |
Sbjct: 612 gctaaagcagagaaggaactcaactggaaagcgaaatttggcatcgatgaaatgtgtagg 553
Query: 504 gaccaatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaag 563
|| |||||||||||||| ||||||||||||||||| || || |||| |||||| | ||||
Sbjct: 552 gatcaatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaag 493
Query: 564 cagaatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcaca 623
||||| || ||||| | ||||||| || ||| ||||||||||||||||| |||||
Sbjct: 492 cagaacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcaca 433
Query: 624 aa 625
||
Sbjct: 432 aa 431
>gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249_2A, mRNA sequence
Length = 312
Score = 224 bits (113), Expect = 8e-056
Identities = 183/205 (89%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtact 60
|||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 102 atatttgccgtgatatctaccgtacagatcctgaatggaagattattctacttaggtact 161
Query: 61 tcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattccca 120
||||||||||||| ||||||||||| ||||| ||||| || || ||| | || |||||||
Sbjct: 162 tcaatccagttggggctcatcctagcggataccttggggaagatccatgtggcattccca 221
Query: 121 acaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagttt 180
||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||| |
Sbjct: 222 acaatcttatgccttatgttcagcaagttgctgttggcaggagg-cagctctgacaatac 280
Query: 181 taggaaatgactatgcaacaagaga 205
|||||||||| |||||||| |||||
Sbjct: 281 taggaaatgattatgcaaccagaga 305
>gb|CB669623.1|CB669623 OSJNEe02D23.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 3', mRNA sequence
Length = 822
Score = 194 bits (98), Expect = 8e-047
Identities = 266/322 (82%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| || | |||||| |||||||||||||| || || |||||||
Sbjct: 822 aagcatacaaccttggaactggtaaaggtacctctgtgctggagatagtcaaggcatttg 763
Query: 364 agaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggtgatgcag 423
|||||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||| |
Sbjct: 762 agaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggtgatgcgg 703
Query: 424 agattctgttttcagagactactaaagcagagagggagcttaactggaaagcaaaatacg 483
||||||| |||||| || |||||||||||| ||| || ||||||||||| |||| |
Sbjct: 702 agattctattttcattacctgctaaagcagagaaggaactcaactggaaagcgaaatttg 643
Query: 484 gtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttatggctatg 543
| || || || ||||| | || |||||||||||||| ||||||||||||||||| || |
Sbjct: 642 gcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttatggatacg 583
Query: 544 gatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgactcctcca 603
| |||| |||||| | ||||||||| || ||||| | ||||||| || ||| |||
Sbjct: 582 ggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggctctccca 523
Query: 604 agcagaatggccaccgcacaaa 625
|||||||||||||| |||||||
Sbjct: 522 agcagaatggccactgcacaaa 501
>gb|CB672511.1|CB672511 OSJNEe06J08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06J08 3', mRNA sequence
Length = 835
Score = 153 bits (77), Expect = 3e-034
Identities = 221/269 (82%)
Strand = Plus / Minus
Query: 357 gcatttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgcccaggt 416
||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||| |||
Sbjct: 825 gcatttgagaaggcttctgggaagaaaattcctctgattattggcccaagacgccctggt 766
Query: 417 gatgcagagattctgttttcagagactactaaagcagagagggagcttaactggaaagca 476
||||| |||||||| |||||| || |||||||||||| ||| || |||||||||||
Sbjct: 765 gatgcggagattctattttcattacctgctaaagcagagaaggaactcaactggaaagcg 706
Query: 477 aaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaacccttat 536
|||| || || || || ||||| | || |||||||||||||| |||||||||||||||
Sbjct: 705 aaatttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaagaacccttat 646
Query: 537 ggctatggatcacctgactctatcaagcagaatggtcaccaaacaaacggatccgctgac 596
|| || || |||| |||||| | ||||||||| || ||||| | ||||||| || |
Sbjct: 645 ggatacgggtcacttgactccaccaagcagaacggacaccactcgtacggatcaattggc 586
Query: 597 tcctccaagcagaatggccaccgcacaaa 625
|| ||||||||||||||||| |||||||
Sbjct: 585 tctcccaagcagaatggccactgcacaaa 557
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0024J13
Length = 127614
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 70514 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 70455
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 70454 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 70395
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 70394 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 70335
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 70334 ggaaatgactatgcaacaaaagatgggacaggggt 70300
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 68687 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 68628
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 68627 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 68587
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 69383 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 69324
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 69323 agaaagtttctgg 69311
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 69667 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 69608
Query: 282 ga 283
||
Sbjct: 69607 ga 69606
>gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019597, whole
genome shotgun sequence
Length = 35375
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Plus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 25277 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 25336
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 25337 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 25396
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 25397 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 25456
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 25457 ggaaatgactatgcaacaaaagatgggacaggggt 25491
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 27104 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 27163
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 27164 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 27204
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 26408 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 26467
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 26468 agaaagtttctgg 26480
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 26124 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 26183
Query: 282 ga 283
||
Sbjct: 26184 ga 26185
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 199101 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 199042
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 199041 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 198982
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 198981 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 198922
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 198921 ggaaatgactatgcaacaaaagatgggacaggggt 198887
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 197274 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 197215
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 197214 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 197174
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 197970 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 197911
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 197910 agaaagtttctgg 197898
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 198254 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 198195
Query: 282 ga 283
||
Sbjct: 198194 ga 198193
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 2868275 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 2868216
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 2868215 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 2868156
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 2868155 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 2868096
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 2868095 ggaaatgactatgcaacaaaagatgggacaggggt 2868061
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 2866448 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 2866389
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 2866388 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 2866348
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 2867144 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 2867085
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 2867084 agaaagtttctgg 2867072
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 2867428 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 2867369
Query: 282 ga 283
||
Sbjct: 2867368 ga 2867367
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 8274513 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 8274454
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 8274453 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 8274394
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 8274393 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 8274334
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 8274333 ggaaatgactatgcaacaaaagatgggacaggggt 8274299
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 8272686 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 8272627
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 8272626 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 8272586
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 8273382 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 8273323
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 8273322 agaaagtttctgg 8273310
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 8273666 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 8273607
Query: 282 ga 283
||
Sbjct: 8273606 ga 8273605
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 149 bits (75), Expect = 4e-033
Identities = 180/215 (83%)
Strand = Plus / Minus
Query: 3 atttgccgggatatctaccgttcagatcctgaatggaagatcattttacttaggtacttc 62
|||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||||||||
Sbjct: 9387100 atttgccgtgatatataccattcagattctgaatggagcataattttacttaggtacttc 9387041
Query: 63 aatccagttggtgctcatcctagtggatatcttggcgaggacccacgaggaattcccaac 122
||||| ||||| |||||||| |||||||| ||||| || |||||| | |||||||| |||
Sbjct: 9387040 aatcctgttggagctcatcccagtggataccttggtgaagacccatgtggaattcctaac 9386981
Query: 123 aatcttatgccctatgttcagcaagttgcggttggtaggaggccagctctgacagtttta 182
|| || ||||||| || ||||||||||| || || ||||| || | || ||| | ||
Sbjct: 9386980 aacctcatgcccttcgtccagcaagttgctgtcgggaggagaccgtcacttacaatattt 9386921
Query: 183 ggaaatgactatgcaacaagagacgggactggggt 217
||||||||||||||||||| ||| ||||| |||||
Sbjct: 9386920 ggaaatgactatgcaacaaaagatgggacaggggt 9386886
Score = 58.0 bits (29), Expect = 1e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 474 gcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaaccct 533
|||||||| || || ||||| |||||| | ||||||||||||||||| |||||||| |||
Sbjct: 9385273 gcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaatcct 9385214
Query: 534 tatggctatggatcacctgactctatcaagcagaatggtca 574
| || || | || || ||||| | |||||||||||||||
Sbjct: 9385213 ttcgggtacgcctcgcccgactccaccaagcagaatggtca 9385173
Score = 50.1 bits (25), Expect = 0.003
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 304 aagcgtacaaccttggaaccggaagaggtacatctgtgctggagattgttaaagcatttg 363
|||| |||||||||||||| |||| || ||||| ||| |||| || ||||| |||||||
Sbjct: 9385969 aagcatacaaccttggaacaggaaagggaacatcagtgttggaaatagttaatgcatttg 9385910
Query: 364 agaaggcttctgg 376
|||| | ||||||
Sbjct: 9385909 agaaagtttctgg 9385897
Score = 44.1 bits (22), Expect = 0.17
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 222 gattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaagcttttt 281
||||| || ||||| ||||| |||||||| || |||||||||||| | | |||||| |||
Sbjct: 9386253 gattatattcatgtagttgatcttgctgaggggcatattgctgcactacggaagctgttt 9386194
Query: 282 ga 283
||
Sbjct: 9386193 ga 9386192
>gb|AQ914234.1|AQ914234 nbeb0047J20f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0047J20f, DNA sequence
Length = 763
Score = 131 bits (66), Expect = 9e-028
Identities = 132/154 (85%)
Strand = Plus / Minus
Query: 52 ttaggtacttcaatccagttggtgctcatcctagtggatatcttggcgaggacccacgag 111
|||||||||||||||||||||| ||||||||||| ||||| |||| || || | | | |
Sbjct: 690 ttaggtacttcaatccagttggggctcatcctagcggatactttggggaagatcaatgtg 631
Query: 112 gaattcccaacaatcttatgccctatgttcagcaagttgcggttggtaggaggccagctc 171
| ||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 630 gcattcccaccaattttatgcattatgttcagcaagttgctgttggcaggaggccagctc 571
Query: 172 tgacagttttaggaaatgactatgcaacaagaga 205
||||| | |||||||||| |||||||| |||||
Sbjct: 570 tgacaatactaggaaatgattatgcaaccagaga 537
>gb|AZ046773.1|AZ046773 nbeb0085D08r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0085D08r, DNA
sequence
Length = 384
Score = 119 bits (60), Expect = 4e-024
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 215 ggtccgagattacatccatgtggttgaccttgctgacggacatattgctgcattgcagaa 274
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 247 ggtccgagattacatccatgtggttgaccttgctgatggacatattgcggcattgcagaa 306
Query: 275 gctttttgagaactctagcatagg 298
|| ||||||| ||| ||||||||
Sbjct: 307 actctttgagagctccagcatagg 330
>gb|CV152471.1|CV152471 LS34-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 734
Score = 99.6 bits (50), Expect = 3e-018
Identities = 176/218 (80%)
Strand = Plus / Plus
Query: 408 cgcccaggtgatgcagagattctgttttcagagactactaaagcagagagggagcttaac 467
||||| |||||||| |||||||| |||||| || |||||||||||| ||| || |||
Sbjct: 46 cgccctggtgatgcggagattctattttcattacctgctaaagcagagaaggaactcaac 105
Query: 468 tggaaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaag 527
|||||||| |||| || || || || ||||| | || |||||||||||||| ||||||
Sbjct: 106 tggaaagcgaaatttggcatcgatgaaatgtgtagggatcaatggaactgggctagcaag 165
Query: 528 aacccttatggctatggatcacctgactctatcaagcagaatggtcaccaaacaaacgga 587
||||||||||| || || |||| |||||| | ||||||||| || ||||| | |||||
Sbjct: 166 aacccttatggatacgggtcacttgactccaccaagcagaacggacaccactcgtacgga 225
Query: 588 tccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||| ||||||||||||||||| |||||||
Sbjct: 226 tcaattggctctcccaagcagaatggccactgcacaaa 263
>dbj|AK063871.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E09, full
insert sequence
Length = 589
Score = 95.6 bits (48), Expect = 5e-017
Identities = 180/224 (80%)
Strand = Plus / Plus
Query: 351 gttaaagcatttgagaaggcttctgggaagaaaatacctctgatttttggtgaaaggcgc 410
||||| ||||||||||| | |||||| |||||||||||| || || ||||| | | |||
Sbjct: 15 gttaatgcatttgagaaagtttctggaaagaaaatacctttggttattggtccacgacgc 74
Query: 411 ccaggtgatgcagagattctgttttcagagactactaaagcagagagggagcttaactgg 470
|| |||||||| |||||||| ||||| || ||||||||||||| || | || |||
Sbjct: 75 cctggtgatgctgagattctcttttcgtcagctgctaaagcagagagagaattcaagtgg 134
Query: 471 aaagcaaaatacggtattgaagagatgtgccgcgaccaatggaactgggccagcaagaac 530
|| |||||||| || || ||||| |||||| | ||||||||||||||||| ||||||||
Sbjct: 135 aaggcaaaatatggcatcgaagaaatgtgcagagaccaatggaactgggcgagcaagaat 194
Query: 531 ccttatggctatggatcacctgactctatcaagcagaatggtca 574
|||| || || | || || ||||| | |||||||||||||||
Sbjct: 195 cctttcgggtacgcctcgcccgactccaccaagcagaatggtca 238
>gb|AU085741.1|AU085741 AU085741 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249, mRNA sequence
Length = 708
Score = 77.8 bits (39), Expect = 1e-011
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 507 caatggaactgggccagcaagaacccttatggctatggatcacctgactctatcaagcag 566
|||||||||||||| ||||||||||||||||| || || |||| |||||| | |||||||
Sbjct: 101 caatggaactgggctagcaagaacccttatggatacgggtcacttgactccaccaagcag 160
Query: 567 aatggtcaccaaacaaacggatccgctgactcctccaagcagaatggccaccgcacaaa 625
|| || ||||| | ||||||| || ||| ||||||||||||||||| |||||||
Sbjct: 161 aacggacaccactcgtacggatcaattggctctcccaagcagaatggccactgcacaaa 219
>gb|CB672510.1|CB672510 OSJNEe06J08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06J08 5', mRNA sequence
Length = 777
Score = 52.0 bits (26), Expect = 7e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 atatttgccgggatatctaccgttcagatcctga 34
|||||||||| |||||||||||| ||||||||||
Sbjct: 744 atatttgccgtgatatctaccgtacagatcctga 777
>gb|AU093034.1|AU093034 AU093034 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61726, mRNA sequence
Length = 701
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 190 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 242
>gb|AU166961.1|AU166961 AU166961 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C60360, mRNA sequence
Length = 455
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 10 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 69
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 70 ctgtggaattgggcgagcaagaacccctacgggtatggatc 110
>gb|CB658458.1|CB658458 OSJNEc14I03.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I03 3', mRNA sequence
Length = 730
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 475 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 416
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 415 ctgtggaattgggcgagcaagaacccctacgggtatggatc 375
>gb|CB681122.1|CB681122 OSJNEf06P20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06P20 3', mRNA sequence
Length = 841
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 585 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 533
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 471 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 412
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 411 ctgtggaattgggcgagcaagaacccctacgggtatggatc 371
>gb|CB684794.1|CB684794 OSJNEf14K15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14K15 3', mRNA sequence
Length = 714
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 486 aaagctgagaaggatctgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 427
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 426 ctgtggaattgggcgagcaagaacccctacgggtatggatc 386
>gb|CF276200.1|CF276200 14ETL--01-E04.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-E04, mRNA sequence
Length = 611
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 596 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 544
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 482 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 423
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 422 ctgtggaattgggcgagcaagaacccctacgggtatggatc 382
>gb|CF277249.1|CF277249 14ETL--02-L11.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-L11, mRNA sequence
Length = 632
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 549 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 497
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 435 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 376
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 375 ctgtggaattgggcgagcaagaacccctacgggtatggatc 335
>gb|CF280539.1|CF280539 14ETL--07-E02.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--07-E02, mRNA sequence
Length = 443
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 378 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 319
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 318 ctgtggaattgggcgagcaagaacccctacgggtatggatc 278
>gb|CF292804.1|CF292804 30DGS--01-M06.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-M06, mRNA sequence
Length = 544
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 398 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 450
>gb|CF307798.1|CF307798 ABF--01-F19.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-F19, mRNA sequence
Length = 448
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 295 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 347
>gb|CF308368.1|CF308368 ABF--02-C17.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-C17, mRNA sequence
Length = 568
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 552 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 500
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 438 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 379
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 378 ctgtggaattgggcgagcaagaacccctacgggtatggatc 338
>gb|CF308514.1|CF308514 ABF--02-F22.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-F22, mRNA sequence
Length = 602
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 496 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 444
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 382 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 323
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 322 ctgtggaattgggcgagcaagaacccctacgggtatggatc 282
>gb|CF308937.1|CF308937 ABF--02-P01.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-P01, mRNA sequence
Length = 561
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 549 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 497
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 435 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 376
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 375 ctgtggaattgggcgagcaagaacccctacgggtatggatc 335
>gb|CF309124.1|CF309124 ABF--03-D03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-D03, mRNA sequence
Length = 574
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 558 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 506
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 444 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 385
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 384 ctgtggaattgggcgagcaagaacccctacgggtatggatc 344
>gb|CF309246.1|CF309246 ABF--03-F21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-F21, mRNA sequence
Length = 594
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 442 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 494
>gb|CF309247.1|CF309247 ABF--03-F21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-F21, mRNA sequence
Length = 641
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 635 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 583
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 521 aaagctgagaaggaactgaaatggaaggcaaaatacggggtggaggagatgtgcagggac 462
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 461 ctgtggaattgggcgagcaagaacccctacgggtatggatc 421
>gb|CF309463.1|CF309463 ABF--03-K15.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-K15, mRNA sequence
Length = 561
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 549 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 497
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 435 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 376
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 375 ctgtggaattgggcgagcaagaacccctacgggtatggatc 335
>gb|CF309751.1|CF309751 ABF--04-A24.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--04-A24, mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 333 acatctgtgctggagattgttaaagcatttgagaaggcttctgggaagaaaat 385
|||||||||||||| || ||| |||||| ||||| |||||||| ||||||||
Sbjct: 552 acatctgtgctggaaatggttgcagcattcgagaaagcttctggaaagaaaat 500
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 438 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 379
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 378 ctgtggaattgggcgagcaagaacccctacgggtatggatc 338
>gb|CF309927.1|CF309927 ABF--04-F05.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--04-F05, mRNA sequence
Length = 541
Score = 50.1 bits (25), Expect = 0.003
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 447 aaagcagagagggagcttaactggaaagcaaaatacggtattgaagagatgtgccgcgac 506
||||| |||| ||| || || ||||| ||||||||||| | || ||||||||| | |||
Sbjct: 433 aaagctgagaaggaactgaaatggaaggcaaaatacggggtagaggagatgtgcagggac 374
Query: 507 caatggaactgggccagcaagaacccttatggctatggatc 547
| ||||| ||||| ||||||||||| || || ||||||||
Sbjct: 373 ctgtggaattgggcgagcaagaacccctacgggtatggatc 333
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,432,607
Number of Sequences: 438736
Number of extensions: 1432607
Number of successful extensions: 5596
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5227
Number of HSP's gapped (non-prelim): 338
length of query: 1175
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1154
effective length of database: 2,791,206,460
effective search space: 3221052254840
effective search space used: 3221052254840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)