BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102494.1| Oryza sativa (japonica cultivar-group) cDNA... 680 0.0
ref|NM_185313.2| Oryza sativa (japonica cultivar-group), mRNA 680 0.0
gb|AACV01012860.1| Oryza sativa (japonica cultivar-group) c... 291 4e-076
dbj|AP001129.1| Oryza sativa (japonica cultivar-group) geno... 291 4e-076
dbj|AP002842.3| Oryza sativa (japonica cultivar-group) geno... 291 4e-076
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 291 4e-076
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 291 4e-076
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 291 4e-076
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 291 4e-076
gb|AU082304.1|AU082304 AU082304 Rice callus Oryza sativa (j... 135 5e-029
gb|C73552.1|C73552 C73552 Rice panicle at ripening stage Or... 60 3e-006
dbj|AK101455.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
ref|NM_183431.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|XM_549803.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
>dbj|AK102494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095A13, full
insert sequence
Length = 2224
Score = 680 bits (343), Expect = 0.0
Identities = 475/519 (91%)
Strand = Plus / Minus
Query: 544 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgtta 1712
Query: 604 tctggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaa 663
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 1711 tctggagccaccatctcagtgacattatagcctccatctggatccaccaccctgatgtat 1652
Query: 664 gtctcctgacccagataccacgtgtccaggttttctgtccgtacattccaaaatcctggg 723
||||||||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 1651 gtctcctgaccaagataccatgtgtccagattttcggtgcgtacgttccaaaaacccggg 1592
Query: 724 ctgtcaagtgacagcatcacagcagtccatgctcccggaaacacctgagtcgtgcaacga 783
||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||
Sbjct: 1591 ctgtcaagtgacagcatcacagcagtccatgctccagggaatacctgtgtggtgcaacga 1532
Query: 784 gaaacaccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtcc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 gaaacaccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtcc 1472
Query: 844 attcctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattg 903
|| ||||||||||| |||||||||||||| || |||||||||||||| | | |||||||
Sbjct: 1471 atccctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattg 1412
Query: 904 ttctgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatc 963
|||||||||||||||||||| || |||||||||||||||||||||||||| ||| | |||
Sbjct: 1411 ttctgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatc 1352
Query: 964 actggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcg 1023
||||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||
Sbjct: 1351 actggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtca 1292
Query: 1024 tacagatctgccaaccttagaggagtgtcgggtggggaa 1062
|| ||||| |||||||| | ||| || || |||||||||
Sbjct: 1291 tagagatccgccaacctcataggggtatcaggtggggaa 1253
>ref|NM_185313.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 2223
Score = 680 bits (343), Expect = 0.0
Identities = 475/519 (91%)
Strand = Plus / Minus
Query: 544 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1770 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgtta 1711
Query: 604 tctggagccaccatctcagtaacattatagcctccatttggatccaccaccctgatgtaa 663
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 1710 tctggagccaccatctcagtgacattatagcctccatctggatccaccaccctgatgtat 1651
Query: 664 gtctcctgacccagataccacgtgtccaggttttctgtccgtacattccaaaatcctggg 723
||||||||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 1650 gtctcctgaccaagataccatgtgtccagattttcggtgcgtacgttccaaaaacccggg 1591
Query: 724 ctgtcaagtgacagcatcacagcagtccatgctcccggaaacacctgagtcgtgcaacga 783
||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||
Sbjct: 1590 ctgtcaagtgacagcatcacagcagtccatgctccagggaatacctgtgtggtgcaacga 1531
Query: 784 gaaacaccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtcc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 gaaacaccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtcc 1471
Query: 844 attcctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattg 903
|| ||||||||||| |||||||||||||| || |||||||||||||| | | |||||||
Sbjct: 1470 atccctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattg 1411
Query: 904 ttctgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatc 963
|||||||||||||||||||| || |||||||||||||||||||||||||| ||| | |||
Sbjct: 1410 ttctgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatc 1351
Query: 964 actggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcg 1023
||||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||
Sbjct: 1350 actggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtca 1291
Query: 1024 tacagatctgccaaccttagaggagtgtcgggtggggaa 1062
|| ||||| |||||||| | ||| || || |||||||||
Sbjct: 1290 tagagatccgccaacctcataggggtatcaggtggggaa 1252
>gb|AACV01012860.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012860, whole
genome shotgun sequence
Length = 5836
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Minus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3927 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 3868
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 3867 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 3808
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 3807 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 3748
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 3747 agcagtccatgctcc 3733
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Minus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 3317 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 3258
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 3257 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 3198
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 3197 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 3138
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 3137 agatccgccaacctcataggggtatcaggtggggaa 3102
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 3424
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 3423 gtccactcaccatagtccat 3404
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0644B06
Length = 194509
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6855 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 6914
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 6915 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 6974
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 6975 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 7034
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 7035 agcagtccatgctcc 7049
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 7465 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 7524
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 7525 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 7584
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 7585 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 7644
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 7645 agatccgccaacctcataggggtatcaggtggggaa 7680
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 7358
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 7359 gtccactcaccatagtccat 7378
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0075G19
Length = 163558
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 161798 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 161857
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 161858 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 161917
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 161918 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 161977
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 161978 agcagtccatgctcc 161992
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 162408 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 162467
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 162468 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 162527
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 162528 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 162587
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 162588 agatccgccaacctcataggggtatcaggtggggaa 162623
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162242 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 162301
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 162302 gtccactcaccatagtccat 162321
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260479 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 260538
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 260539 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 260598
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 260599 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 260658
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 260659 agcagtccatgctcc 260673
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 261089 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 261148
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 261149 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 261208
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 261209 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 261268
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 261269 agatccgccaacctcataggggtatcaggtggggaa 261304
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260923 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 260982
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 260983 gtccactcaccatagtccat 261002
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 214578 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 214637
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 214638 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 214697
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 214698 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 214757
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 214758 agcagtccatgctcc 214772
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 215188 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 215247
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 215248 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 215307
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 215308 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 215367
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 215368 agatccgccaacctcataggggtatcaggtggggaa 215403
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215022 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 215081
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 215082 gtccactcaccatagtccat 215101
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 214578 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 214637
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 214638 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 214697
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 214698 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 214757
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 214758 agcagtccatgctcc 214772
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 215188 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 215247
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 215248 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 215307
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 215308 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 215367
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 215368 agatccgccaacctcataggggtatcaggtggggaa 215403
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215022 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 215081
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 215082 gtccactcaccatagtccat 215101
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 291 bits (147), Expect = 4e-076
Identities = 183/195 (93%)
Strand = Plus / Plus
Query: 564 cttctgtttatccttgaggaggccacagtagagcatgttgtctggagccaccatctcagt 623
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296902 cttctgtttatccttgaggaggccacagtagagcatgttatctggagccaccatctcagt 296961
Query: 624 aacattatagcctccatttggatccaccaccctgatgtaagtctcctgacccagatacca 683
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 296962 gacattatagcctccatctggatccaccaccctgatgtatgtctcctgaccaagatacca 297021
Query: 684 cgtgtccaggttttctgtccgtacattccaaaatcctgggctgtcaagtgacagcatcac 743
|||||||| ||||| || ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 297022 tgtgtccagattttcggtgcgtacgttccaaaaacccgggctgtcaagtgacagcatcac 297081
Query: 744 agcagtccatgctcc 758
|||||||||||||||
Sbjct: 297082 agcagtccatgctcc 297096
Score = 222 bits (112), Expect = 3e-055
Identities = 190/216 (87%)
Strand = Plus / Plus
Query: 847 cctacaacccagaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttc 906
||||||||||| |||||||||||||| || |||||||||||||| | | ||||||||||
Sbjct: 297512 cctacaacccaaaatgcatatccatcgatatggtaggtctggactttcgtgtcattgttc 297571
Query: 907 tgaaatacaatttccaaaaagttcttgtatgtggagttaatgacagatgttctgatcact 966
||||||||||||||||| || |||||||||||||||||||||||||| ||| | ||||||
Sbjct: 297572 tgaaatacaatttccaagaaattcttgtatgtggagttaatgacagaagttttcatcact 297631
Query: 967 ggcggtccatcaattggcattgtagggaagtcaagtgtgtagacatccttcttgtcgtac 1026
|||||||||||||||||||| |||||||||||||| ||||| || | |||||||| ||
Sbjct: 297632 ggcggtccatcaattggcatagtagggaagtcaagcgtgtacactcctttcttgtcatag 297691
Query: 1027 agatctgccaaccttagaggagtgtcgggtggggaa 1062
||||| |||||||| | ||| || || |||||||||
Sbjct: 297692 agatccgccaacctcataggggtatcaggtggggaa 297727
Score = 143 bits (72), Expect = 2e-031
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 766 acctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 825
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297346 acctgtgtggtgcaacgagaaacaccatcccacttgttgtaagtcccacggctattctca 297405
Query: 826 gtccactcaccatagtccat 845
||||||||||||||||||||
Sbjct: 297406 gtccactcaccatagtccat 297425
>gb|AU082304.1|AU082304 AU082304 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61278, mRNA sequence
Length = 462
Score = 135 bits (68), Expect = 5e-029
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 544 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgttg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gaaccatgaggcttctgagccttctgtttatccttgaggaggccacagtagagcatgtta 13
Query: 604 tctggagccacc 615
||||||||||||
Sbjct: 12 tctggagccacc 1
>gb|C73552.1|C73552 C73552 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11023_1A, mRNA sequence
Length = 447
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||| |||||||| || || ||||| || || |||||| ||||||||||| ||
Sbjct: 123 ccatcccatttgttgtatgtaccgcggctgttgtctgtccacagtccatagtccatccca 64
Query: 850 acaacccagaatgcatatccatcaatgtggtaggtctg 887
||||| |||||||||||||||| | ||||||| ||||
Sbjct: 63 acaacaaagaatgcatatccatccaagtggtagctctg 26
>dbj|AK101455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040A20, full
insert sequence
Length = 2162
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||| |||||||| || || ||||| || || |||||| ||||||||||| ||
Sbjct: 1517 ccatcccatttgttgtatgtaccgcggctgttgtctgtccacagtccatagtccatccca 1458
Query: 850 acaacccagaatgcatatccatcaatgtggtaggtctg 887
||||| |||||||||||||||| | ||||||| ||||
Sbjct: 1457 acaacaaagaatgcatatccatccaagtggtagctctg 1420
>ref|NM_183431.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1791
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||| |||||||| || || ||||| || || |||||| ||||||||||| ||
Sbjct: 1463 ccatcccatttgttgtatgtaccgcggctgttgtctgtccacagtccatagtccatccca 1404
Query: 850 acaacccagaatgcatatccatcaatgtggtaggtctg 887
||||| |||||||||||||||| | ||||||| ||||
Sbjct: 1403 acaacaaagaatgcatatccatccaagtggtagctctg 1366
>ref|XM_549803.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2162
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||| |||||||| || || ||||| || || |||||| ||||||||||| ||
Sbjct: 1517 ccatcccatttgttgtatgtaccgcggctgttgtctgtccacagtccatagtccatccca 1458
Query: 850 acaacccagaatgcatatccatcaatgtggtaggtctg 887
||||| |||||||||||||||| | ||||||| ||||
Sbjct: 1457 acaacaaagaatgcatatccatccaagtggtagctctg 1420
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,318,272
Number of Sequences: 438736
Number of extensions: 1318272
Number of successful extensions: 5817
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5724
Number of HSP's gapped (non-prelim): 93
length of query: 1062
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1041
effective length of database: 2,791,206,460
effective search space: 2905645924860
effective search space used: 2905645924860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)