BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276562.2.1
(1286 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA 835 0.0
dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA... 827 0.0
gb|AU057044.1|AU057044 AU057044 Oryza sativa mature leaf Ni... 583 e-164
dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA... 468 e-129
gb|CD670719.1|CD670719 OsMR134 5MT resistant rice mutant cD... 446 e-122
gb|AU094001.1|AU094001 AU094001 Rice panicle at flowering s... 398 e-108
gb|AU165590.1|AU165590 AU165590 Rice panicle at flowering s... 381 e-103
gb|CA755389.1|CA755389 BR030019000_PLATE_G01_7_006.ab1 OA O... 365 4e-098
gb|AU225757.1|AU225757 AU225757 Oryza sativa Koshihikari pi... 323 1e-085
gb|C73018.1|C73018 C73018 Rice panicle at flowering stage O... 319 2e-084
gb|C91818.1|C91818 C91818 Rice panicle shorter than 3cm Ory... 244 1e-061
gb|C72549.1|C72549 C72549 Rice panicle at flowering stage O... 212 4e-052
gb|CV723517.1|CV723517 root--03-N02.g1 Rice root lambda pha... 206 2e-050
dbj|AP004119.3| Oryza sativa (japonica cultivar-group) geno... 204 9e-050
dbj|AP005012.3| Oryza sativa (japonica cultivar-group) geno... 204 9e-050
gb|AACV01005439.1| Oryza sativa (japonica cultivar-group) c... 204 9e-050
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 204 9e-050
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 204 9e-050
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 204 9e-050
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 204 9e-050
gb|CB678978.1|CB678978 OSJNEf01O24.r OSJNEf Oryza sativa (j... 198 5e-048
gb|AU057045.1|AU057045 AU057045 Oryza sativa mature leaf Ni... 190 1e-045
gb|C72574.1|C72574 C72574 Rice panicle at flowering stage O... 141 1e-030
dbj|AP004727.2| Oryza sativa (japonica cultivar-group) geno... 127 2e-026
gb|AACV01013320.1| Oryza sativa (japonica cultivar-group) c... 127 2e-026
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 127 2e-026
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 127 2e-026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 127 2e-026
gb|AU094780.1|AU094780 AU094780 Rice panicle shorter than 3... 117 2e-023
gb|CG409380.1|CG409380 Ds377 Ds insertion lines Oryza sativ... 113 2e-022
gb|CV723424.1|CV723424 root--03-I12.g1 Rice root lambda pha... 76 5e-011
gb|AQ328864.1|AQ328864 nbxb0043P20r CUGI Rice BAC Library O... 60 3e-006
gb|AQ914573.1|AQ914573 nbeb0049O15f CUGI Rice BAC Library (... 54 2e-004
gb|AZ133613.1|AZ133613 OSJNBb0109A04f CUGI Rice BAC Library... 44 0.19
>ref|XM_467846.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1223
Score = 835 bits (421), Expect = 0.0
Identities = 817/949 (86%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 1062 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 1003
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1002 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 943
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 942 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 883
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 882 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 823
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttg 505
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 822 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatccttagtg 763
Query: 506 attgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctc 565
|||| ||| ||||||||| ||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 762 attggatggccgaactgatcattgtaactattgaatgttgctagtaactgtgctttgctc 703
Query: 566 cgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctca 625
| |||||||||||| || ||||| || || |||||||||||||| | |||||||||||||
Sbjct: 702 cttgtggtgagaatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctca 643
Query: 626 tgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcgg 685
|| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 642 tggagtattttggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcga 583
Query: 686 tacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacg 745
|| || | ||||| ||||| |||||||| ||| |||||||||||| ||||| || |||
Sbjct: 582 tatacagtcacaagtggcaccaaaagcttacggtagtcgccggtgatgtgcgccgcgacg 523
Query: 746 tcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgc 805
|||||||||||||| | ||| || || || |||||||||||||| | || |||||||||
Sbjct: 522 tcctcctcgagcgacctcttgaagcgctcgtggtacgcctgcttcgcagcgaagagctgc 463
Query: 806 gcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttc 865
| || ||||||| |||||||||||| || ||||||||||| || ||||| | |||| ||
Sbjct: 462 gatggagtgcgcgtgcacgcgatctcgacgagcgcgcggccccccgggtgccacttcctc 403
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
|||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct: 402 gcctcctcgttcgccagcaccgcgtcccgctccgccgggtccagcgtccactggatcacc 343
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 342 gccctctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtac 283
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
|||||||||||| ||||||||||||| ||||||||||| |||| ||||||||| ||||||
Sbjct: 282 gcctcggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatg 223
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||||||||||| |||||||| |||| ||| |||||| | ||||||||||||
Sbjct: 222 gagatgatgagcttctcgttcgtgccccaccctttgaacgccttgcgcagctgctcgcag 163
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccattg 1154
||||||||||||| ||| |||| || || |||||||||||||||||||
Sbjct: 162 tcctcggcgacgggcggcacggcggcgggcacggtgagcgtcgccattg 114
>dbj|AK101787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F07, full
insert sequence
Length = 1223
Score = 827 bits (417), Expect = 0.0
Identities = 816/949 (85%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 1062 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 1003
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 1002 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 943
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 942 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 883
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 882 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 823
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttg 505
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 822 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatccttagtg 763
Query: 506 attgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctc 565
|||| ||| ||||||||| ||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 762 attggatggccgaactgatcattgtaactattgaatgttgctagtaactgtgctttgctc 703
Query: 566 cgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctca 625
| |||||||||||| || ||||| || || |||||||||||||| | |||||||||||||
Sbjct: 702 cttgtggtgagaatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctca 643
Query: 626 tgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcgg 685
|| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 642 tggagtattttggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcga 583
Query: 686 tacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacg 745
|| || | ||||| ||||| |||||||| ||| |||||||||||| ||||| || |||
Sbjct: 582 tatacagtcacaagtggcaccaaaagcttacggtagtcgccggtgatgtgcgccgcgacg 523
Query: 746 tcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgc 805
|||||||||||||| | ||| || || || |||||||||||||| | || |||||||||
Sbjct: 522 tcctcctcgagcgacctcttgaagcgctcgtggtacgcctgcttcgcagcgaagagctgc 463
Query: 806 gcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttc 865
| || ||||||| |||||||||||| || ||||||||||| || ||||| | |||| ||
Sbjct: 462 gatggagtgcgcgtgcacgcgatctcgacgagcgcgcggccccccgggtgccacttcctc 403
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
|||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct: 402 gcctcctcgtccgccagcaccgcgtcccgctccgccgggtccagcgtccactggatcacc 343
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 342 gccctctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtac 283
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
|||||||||||| ||||||||||||| ||||||||||| |||| ||||||||| ||||||
Sbjct: 282 gcctcggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatg 223
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||||||||||| |||||||| |||| ||| |||||| | ||||||||||||
Sbjct: 222 gagatgatgagcttctcgttcgtgccccaccctttgaacgccttgcgcagctgctcgcag 163
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccattg 1154
||||||||||||| ||| |||| || || |||||||||||||||||||
Sbjct: 162 tcctcggcgacgggcggcacggcggcgggcacggtgagcgtcgccattg 114
>gb|AU057044.1|AU057044 AU057044 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21089_1A, mRNA sequence
Length = 713
Score = 583 bits (294), Expect = e-164
Identities = 555/639 (86%), Gaps = 3/639 (0%)
Strand = Plus / Minus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| ||||||||| |||||||||
Sbjct: 698 gaactgatcattgtaactattgaatgttgctagtaactgt-ctttgctccttgtggtgag 640
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 639 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 580
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 579 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 520
Query: 697 aagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgag 756
||| ||||| |||||||| ||| |||||||||||| ||||| || ||||||||||||||
Sbjct: 519 aagtggcaccaaaagcttacggtagtcgccggtgatgtgcgccgcgacgtcctcctcgag 460
Query: 757 cgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcg 816
||| | ||| || || || ||||||| || | | | || |||||||||| || |||||
Sbjct: 459 cgacctcttgaagcgctcgtggtacgnctnttcg-cagcgaagagctgcgatggagtgcg 401
Query: 817 cgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgtt 876
|| |||||||||||| || ||||||||||| || ||||| | |||| |||||||||||||
Sbjct: 400 cgtgcacgcgatctcgacgagcgcgcggccccccgggtgccacttcctcgcctcctcgtt 341
Query: 877 cgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcgaa 936
|||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 340 cgccagcancgcgtcccgctccgccgggtccagcgtccactggatcaccgccctctcgaa 281
Query: 937 cttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcgta 996
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct: 280 tttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctcggcgta 221
Query: 997 gccgcggcggatcg-cgcggcgctgcgcggcgttgcggtgggccaggatggagatgatca 1055
| |||||||||||| | ||||||||||| |||| ||||||||| |||||||||||||| |
Sbjct: 220 ggcgcggcggatcgccccggcgctgcgccgcgtcgcggtgggcgaggatggagatgatga 161
Query: 1056 gcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcga 1115
|||||||||| |||||||| |||| ||| |||||| | ||||||||||||||||||||||
Sbjct: 160 gcttctcgttcgtgccccaccctttgaacgccttgcgcagctgctcgcagtcctcggcga 101
Query: 1116 cggccgggacggaggaaggaacggtgagcgtcgccattg 1154
||| ||| |||| || || |||||||||||||||||||
Sbjct: 100 cgggcggcacggcggcgggcacggtgagcgtcgccattg 62
>dbj|AK072559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A10, full
insert sequence
Length = 1274
Score = 468 bits (236), Expect = e-129
Identities = 724/887 (81%), Gaps = 6/887 (0%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 982 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 923
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 922 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 863
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 862 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 803
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttgattgca 511
|| ||||| || ||||| ||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 802 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatccttgttgattggg 743
Query: 512 tgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtg 571
||| | | ||| ||||| | ||||||||| |||| | |||||| ||||||| ||
Sbjct: 742 tgaccatattcatcattgtaacgattgaatgtcgcaatcaactgagccttgctcctagta 683
Query: 572 gtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagt 631
||||||||||| |||||||| ||||||| || ||||| | |||||||||||||| ||
Sbjct: 682 gtgagaattctgatgatctcatcatcaccatatgccttatgctggatcttctcatgcaga 623
Query: 632 attttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgca 691
||||||||||| ||||| ||||| |||||| || || || || ||||||||||| |||
Sbjct: 622 attttggcttctgaatgtgccaactttgtgttgacttccggcccctcatagcggtaagca 563
Query: 692 ctaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcc 751
|| | ||| ||||| || ||||| |||||||| || ||| | ||||| || |||||||||
Sbjct: 562 cttataagtggcaccaagagcttgcggaagtcaccagtggcgtgcgccgcgacgtcctcc 503
Query: 752 tcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggc 811
|||||||| ||||| || || || ||||| |||||| ||||||| || |||||||||||
Sbjct: 502 tcgagcgagcgcttgaagcgctcgtggtaggcctgcctgaccgcgaacagctgcgcgggg 443
Query: 812 gtgcgcgcgcacgcgatctccaccagcgcgcggccgccg------gggtggctcttcttc 865
|||||||||||||||||| |||||| |||||| ||| |||| | |||| ||
Sbjct: 442 ccgcgcgcgcacgcgatctcgaccagcacgcggctcccgctccctgggtaccacttcctc 383
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
|| ||||||| || ||||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 382 gcgacctcgttggcgagcaccgcgtcgcgctccgccgggtccagcgtccacaggatcacg 323
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
||||||||||| | |||| |||||||||| || |||||| ||||||| |||||
Sbjct: 322 gccctctcgaagtcgccggagatctcgtcggtgatgctgcggaggagctcctcgccgtag 263
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
| ||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||||
Sbjct: 262 gtgtcggcgtaggcgcggcggatggcgcgccgctgcgccgcgtcgcggtgggccaggatg 203
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||| |||||| |||||||| |||| |||||||||| ||||||| ||||||
Sbjct: 202 gagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggagctggtcgcag 143
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
|| |||||||||| |||||||| ||| || |||||||||||||||||
Sbjct: 142 tcgtcggcgacgggcgggacggcggaggggacggtgagcgtcgccat 96
>gb|CD670719.1|CD670719 OsMR134 5MT resistant rice mutant cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 642
Score = 446 bits (225), Expect = e-122
Identities = 367/413 (88%), Gaps = 1/413 (0%)
Strand = Plus / Minus
Query: 743 acgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagc 802
||||||||||||||||| | |||||| || || |||||||||||||| | || ||||||
Sbjct: 529 acgtcctcctcgagcgacctcttaaagcgctcgtggtacgcctgcttcgcagcgaagagc 470
Query: 803 tgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgcc-ggggtggctctt 861
|||| || ||||||| |||||||||||| || ||||||||||| || |||||| | |||
Sbjct: 469 tgcgatggagtgcgcgtgcacgcgatctcgacgagcgcgcggccccccggggtgccactt 410
Query: 862 cttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggat 921
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct: 409 cctcgcctcctcgttcgccagcaccgcgtcccgctccgccgggtccagcgtccactggat 350
Query: 922 caccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttccc 981
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||
Sbjct: 349 caccgccctctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcccc 290
Query: 982 gtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccag 1041
|||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||| ||
Sbjct: 289 gtacgcctcggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgag 230
Query: 1042 gatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctc 1101
|||||||||||| ||||||||||| |||||||| |||| ||| |||||| | ||||||||
Sbjct: 229 gatggagatgatgagcttctcgttcgtgccccaccctttgaacgccttgcgcagctgctc 170
Query: 1102 gcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccattg 1154
||||||||||||||||| ||| |||| || || |||||||||||||||||||
Sbjct: 169 gcagtcctcggcgacgggcggcacggcggcgggcacggtgagcgtcgccattg 117
>gb|AU094001.1|AU094001 AU094001 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1818, mRNA sequence
Length = 711
Score = 398 bits (201), Expect = e-108
Identities = 460/545 (84%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 545 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 486
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 485 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 426
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 425 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 366
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 365 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 306
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttg 505
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 305 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatccttagtg 246
Query: 506 attgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctc 565
|||| ||| ||||||||| ||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 245 attggatggccgaactgatcattgtaactattgaatgttgctagtaactgtgctttgctc 186
Query: 566 cgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctca 625
| |||||||||||| || ||||| || || |||||||||||||| | |||||||||||||
Sbjct: 185 cttgtggtgagaatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctca 126
Query: 626 tgaagtattttggc-ttcagaatgagccaaagatgtgttcacctctgggccatcatagcg 684
|| ||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 125 tggagtattttggctttcagaatgtgccaacgatgtgttcacctctggcccatcatagcg 66
Query: 685 gtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaac 744
|| || | ||||| ||||| |||||||| ||| |||||||||||| ||||| || ||
Sbjct: 65 atatacagtcacaagtggcaccaaaagcttacggtagtcgccggtgatgtgcgccgcgac 6
Query: 745 gtcct 749
|||||
Sbjct: 5 gtcct 1
>gb|AU165590.1|AU165590 AU165590 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2728, mRNA sequence
Length = 710
Score = 381 bits (192), Expect = e-103
Identities = 446/528 (84%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 528 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 469
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 468 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 409
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 408 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 349
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 348 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 289
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttg 505
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 288 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatccttagtg 229
Query: 506 attgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctc 565
|||| ||| ||||||||| ||||| |||||||||||||| |||| ||| |||||||||
Sbjct: 228 attggatggccgaactgatcattgtaactattgaatgttgctagtaactgtgctttgctc 169
Query: 566 cgtgtggtgagaattc-taatgatctcctcatcactgtaagccttcttatggatcttctc 624
| |||||||||||| | | ||||| || || |||||||||||||| | ||||||||||||
Sbjct: 168 cttgtggtgagaatccttgatgatttcatcgtcactgtaagccttgtcatggatcttctc 109
Query: 625 atgaagtattttggcttcagaatgagccaa-agatgtgttcacctctgggccatcatagc 683
||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 108 atggagtattttggcttcagaatgtgccaacggatgtgttcacctctggcccatcatagc 49
Query: 684 ggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtga 731
| || || | ||||| ||||| |||||||| ||| ||||||||||||
Sbjct: 48 gatatacagtcacaagtggcaccaaaagcttacggtagtcgccggtga 1
>gb|CA755389.1|CA755389 BR030019000_PLATE_G01_7_006.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030019000_PLATE_G01_7_006.ab1 similar to annexin P35 -
maize gi|1370603|emb|CAA66901.1| (X98245) annexin p35
[Zea mays], mRNA sequence
Length = 608
Score = 365 bits (184), Expect = 4e-098
Identities = 393/463 (84%)
Strand = Plus / Minus
Query: 222 ggagggcaagcataatatcctcataatctctagttgtatctttggccacagcacgctcca 281
|||||||||| | |||||||| || ||||| ||||||||||| || ||||| |||||||
Sbjct: 474 ggagggcaaggagtatatcctcgtagtctctggttgtatctttagcaacagctcgctcca 415
Query: 282 gcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgc 341
|| ||||||||||||||||| || |||||||| |||||||||||||| |||||||| |
Sbjct: 414 atgggacactgtttctcttctggtaggcctccttnatcagcttcaggtctacctcggcac 355
Query: 342 gagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagccagtc 401
|||| |||| || ||| || || | ||| || |||||||| ||||| ||||||| ||
Sbjct: 354 gagttgttatgatccttgtaagagagttctcgtctgtgcccattcctcctagagccaatc 295
Query: 402 gaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtg 461
||||||||||||| ||||||||||||||||| |||||||| | |||||||||| ||||
Sbjct: 294 gaatgactttctcaaagtatctgtcagggcaagtgaagcatcttatgatcgcccttagtg 235
Query: 462 ttgaaagaaactcatccttggggtcagctttcagatccttgttgattgcatgagtgaact 521
| ||| ||||| ||||| || |||||||| |||||||| |||||| ||| |||||
Sbjct: 234 taccaaggaactcgtccttaggatcagctttaagatccttagtgattggatggccgaact 175
Query: 522 gatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattc 581
|||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||||| |
Sbjct: 174 gatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgagaatcc 115
Query: 582 taatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattttggctt 641
| ||||| || || |||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct: 114 tgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtattttggctt 55
Query: 642 cagaatgagccaaagatgtgttcacctctgggccatcatagcg 684
||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 54 cagaatgtgccaacgatgtgttcacctctggcccatcatagcg 12
>gb|AU225757.1|AU225757 AU225757 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0751, mRNA sequence
Length = 396
Score = 323 bits (163), Expect = 1e-085
Identities = 325/379 (85%)
Strand = Plus / Minus
Query: 381 ccatgcctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagc 440
|||| ||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 396 ccattcctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagc 337
Query: 441 accggatgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
| | |||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 336 atcttatgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 277
Query: 501 tgttgattgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctt 560
| |||||| ||| ||||||||| ||||| |||||||||||||| |||| ||| ||||
Sbjct: 276 tagtgattggatggccgaactgatcattgtaactattgaatgttgctagtaactgtgctt 217
Query: 561 tgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatct 620
|||||| |||||||||||| || ||||| || || |||||||||||||| | ||||||||
Sbjct: 216 tgctccttgtggtgagaatcctgatgatttcatcgtcactgtaagccttgtcatggatct 157
Query: 621 tctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggccatcat 680
||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 156 tctcatggagtattttggcttcagaatgtgccaacgatgtgttcacctctggcccatcat 97
Query: 681 agcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcgg 740
|||| || || | ||||| ||||| |||||||| ||| |||||||||||| ||||| |
Sbjct: 96 agcgatatacagtcacaagtggcaccaaaagcttacggtagtcgccggtgatgtgcgccg 37
Query: 741 caacgtcctcctcgagcga 759
| |||||||||||||||||
Sbjct: 36 cgacgtcctcctcgagcga 18
>gb|C73018.1|C73018 C73018 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2728_2A, mRNA sequence
Length = 476
Score = 319 bits (161), Expect = 2e-084
Identities = 304/344 (88%), Gaps = 6/344 (1%)
Strand = Plus / Minus
Query: 812 gtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcc 871
||||||| |||||||||||| || ||||||||||| || ||||| | |||| ||||||||
Sbjct: 398 gtgcgcgtgcacgcgatctcgacgagcgcgcggccccccgggtgccacttcctcgcctcc 339
Query: 872 tcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctc 931
|||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 338 tcgttcgccagcaccgcgtcccg-tccgccgggtccagcgtccactggatcaccgccctc 280
Query: 932 tcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcg 991
||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct: 279 tcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctcg 220
Query: 992 gcgtagccgcggcggatcg-cgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
|||||| |||||||||||| | ||||| ||||| || | ||||||||| |||||||||||
Sbjct: 219 gcgtaggcgcggcggatcgccccggcg-tgcgc-gcntcgcggtgggcgaggatggagat 162
Query: 1051 gatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctc 1110
||| ||||||||||| |||||||| |||| ||| |||||| | |||||||||||||||||
Sbjct: 161 gatgagcttctcgttcgtgccccaccctt-gaacgccttgcgcagctgctcgcagtcctc 103
Query: 1111 ggcgacggccgggacggaggaaggaacggtgagcgtcgccattg 1154
|||||||| ||| |||| || || ||||||| |||||||||||
Sbjct: 102 ggcgacgggcggcacggcggcgggcacggtga-cgtcgccattg 60
>gb|C91818.1|C91818 C91818 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31628_1A, mRNA sequence
Length = 298
Score = 244 bits (123), Expect = 1e-061
Identities = 217/247 (87%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 908 agcgtccacaggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcgg 967
||||||||| ||||||||||||||||||| |||||||||||||||||| ||| || |||
Sbjct: 298 agcgtccactggatcaccgccctctcgaatttgccgtggatctcgtcgttgagggcncgg 239
Query: 968 agcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcg 1027
|||||||||| |||||||||||||||||| |||| |||||||| |||| ||| || ||
Sbjct: 238 agcagctcctcgccgtacgcctcggcgtaggcgcgncggatcgcccggcn-tgcncg-cg 181
Query: 1028 ttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggcc 1087
| ||||||||| |||||||||||||| ||||||||||| |||||||| |||| ||| |||
Sbjct: 180 tcgcggtgggcgaggatggagatgatgagcttctcgttcgtgccccaccctttgaacgcc 121
Query: 1088 ttgtggagctgctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtc 1147
||| | ||||||||||||||||||||||||| ||| |||| || || ||||||||||||
Sbjct: 120 ttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcgggcacggtgagcgtc 61
Query: 1148 gccattg 1154
|||||||
Sbjct: 60 gccattg 54
>gb|C72549.1|C72549 C72549 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1818_1A, mRNA sequence
Length = 347
Score = 212 bits (107), Expect = 4e-052
Identities = 207/237 (87%), Gaps = 3/237 (1%)
Strand = Plus / Minus
Query: 918 ggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcct 977
||||||||||||||||||| |||||||||||||||||| ||| |||||||| | |||||
Sbjct: 313 ggatcaccgccctctcgaatttgccgtggatctcgtcgttgagggcgcggagaa-ctcct 255
Query: 978 tcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtggg 1037
|||||||||||| ||||| ||||||||||||| |||| ||||| ||| ||||||||
Sbjct: 254 cgccgtacgcctcgncgtaggcgcggcggatcgcccggc-ctgcgnc-cgtcgcggtggg 197
Query: 1038 ccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagct 1097
| |||||||||||||| ||||||||||| |||||||| |||| ||| |||||| | ||||
Sbjct: 196 cgaggatggagatgatgagcttctcgttcgtgccccaccctttgaacgccttgcgcagct 137
Query: 1098 gctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccattg 1154
||||||||||||||||||||| ||| |||| || || |||||||||||||||||||
Sbjct: 136 gctcgcagtcctcggcgacgggcggcacggcggcgggcacggtgagcgtcgccattg 80
>gb|CV723517.1|CV723517 root--03-N02.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-N02, mRNA sequence
Length = 486
Score = 206 bits (104), Expect = 2e-050
Identities = 248/296 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 179 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 238
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 239 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 298
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 299 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 358
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 359 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 418
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcctt 501
|||||||||| ||||| ||| ||||| ||||| || |||||||| ||||||||
Sbjct: 419 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcctt 474
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1288_G09
Length = 109672
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 96645 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 96704
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 96705 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 96764
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 96765 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 96824
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 96825 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 96884
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 96885 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 96939
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 97977 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 98036
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 98037 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 98096
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 98097 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 98156
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 98157 ccgggtccagcgtccactggatcaccgccctct 98189
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 97205 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 97264
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 97265 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 97324
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 97325 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 97384
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 97385 aagtggcaccaaaagct 97401
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 98284 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 98343
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 98344 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 98403
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 98404 gatgagcttctcgttcgtgcccca 98427
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 98527 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 98586
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 98587 cacggtgagcgtcgccattg 98606
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0627E03
Length = 159861
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 12656 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 12715
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 12716 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 12775
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 12776 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 12835
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 12836 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 12895
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 12896 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 12950
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 13988 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 14047
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 14048 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 14107
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 14108 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 14167
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 14168 ccgggtccagcgtccactggatcaccgccctct 14200
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 13216 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 13275
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 13276 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 13335
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 13336 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 13395
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 13396 aagtggcaccaaaagct 13412
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 14295 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 14354
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 14355 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 14414
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 14415 gatgagcttctcgttcgtgcccca 14438
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 14538 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 14597
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 14598 cacggtgagcgtcgccattg 14617
>gb|AACV01005439.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005439, whole
genome shotgun sequence
Length = 46639
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 34435 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 34376
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 34375 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 34316
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 34315 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 34256
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 34255 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 34196
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 34195 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 34141
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Minus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 33875 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 33816
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 33815 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 33756
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 33755 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 33696
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 33695 aagtggcaccaaaagct 33679
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Minus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 33103 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 33044
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 33043 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 32984
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 32983 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 32924
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 32923 ccgggtccagcgtccactggatcaccgccctct 32891
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Minus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 32796 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 32737
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 32736 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 32677
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 32676 gatgagcttctcgttcgtgcccca 32653
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 32550 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 32491
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 32490 cacggtgagcgtcgccattg 32471
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 6881857 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 6881916
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 6881917 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 6881976
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 6881977 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 6882036
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 6882037 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 6882096
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 6882097 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 6882151
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 6883189 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 6883248
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 6883249 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 6883308
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 6883309 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 6883368
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 6883369 ccgggtccagcgtccactggatcaccgccctct 6883401
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 6882417 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 6882476
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 6882477 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 6882536
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 6882537 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 6882596
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 6882597 aagtggcaccaaaagct 6882613
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 6883496 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 6883555
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 6883556 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 6883615
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 6883616 gatgagcttctcgttcgtgcccca 6883639
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 6883739 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 6883798
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 6883799 cacggtgagcgtcgccattg 6883818
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 18280467 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 18280526
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 18280527 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 18280586
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 18280587 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 18280646
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 18280647 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 18280706
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 18280707 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 18280761
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 18281799 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 18281858
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 18281859 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 18281918
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 18281919 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 18281978
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 18281979 ccgggtccagcgtccactggatcaccgccctct 18282011
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 18281027 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 18281086
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 18281087 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 18281146
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 18281147 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 18281206
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 18281207 aagtggcaccaaaagct 18281223
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 18282106 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 18282165
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 18282166 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 18282225
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 18282226 gatgagcttctcgttcgtgcccca 18282249
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 18282352 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 18282411
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 18282412 cacggtgagcgtcgccattg 18282431
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 31733531 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 31733590
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 31733591 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 31733650
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 31733651 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 31733710
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 31733711 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 31733770
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 31733771 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 31733825
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 31734863 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 31734922
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 31734923 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 31734982
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 31734983 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 31735042
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 31735043 ccgggtccagcgtccactggatcaccgccctct 31735075
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 31734091 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 31734150
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 31734151 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 31734210
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 31734211 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 31734270
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 31734271 aagtggcaccaaaagct 31734287
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 31735170 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 31735229
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 31735230 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 31735289
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 31735290 gatgagcttctcgttcgtgcccca 31735313
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 31735416 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 31735475
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 31735476 cacggtgagcgtcgccattg 31735495
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 204 bits (103), Expect = 9e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 31716858 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 31716917
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 31716918 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 31716977
Query: 326 aggtcgacctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatg 385
||||| |||||||| ||||| |||| || ||| || || | ||| || ||||||||
Sbjct: 31716978 aggtctacctcggcacgagttgttatgatccttgtaagagagttctcgtctgtgcccatt 31717037
Query: 386 cctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccgg 445
||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 31717038 cctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtgaagcatctt 31717097
Query: 446 atgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|||||||||| ||||| ||| ||||| ||||| || |||||||| |||||||
Sbjct: 31717098 atgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaagatcct 31717152
Score = 200 bits (101), Expect = 1e-048
Identities = 185/213 (86%)
Strand = Plus / Plus
Query: 720 agtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggt 779
|||||||||||| ||||| || ||||||||||||||||| | ||| || || || ||||
Sbjct: 31718190 agtcgccggtgatgtgcgccgcgacgtcctcctcgagcgacctcttgaagcgctcgtggt 31718249
Query: 780 acgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcg 839
|||||||||| | || |||||||||| || ||||||| |||||||||||| || ||||
Sbjct: 31718250 acgcctgcttcgcagcgaagagctgcgatggagtgcgcgtgcacgcgatctcgacgagcg 31718309
Query: 840 cgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccg 899
||||||| || ||||| | |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 31718310 cgcggccccccgggtgccacttcctcgcctcctcgttcgccagcaccgcgtcccgctccg 31718369
Query: 900 cggggtccagcgtccacaggatcaccgccctct 932
| ||||||||||||||| |||||||||||||||
Sbjct: 31718370 ccgggtccagcgtccactggatcaccgccctct 31718402
Score = 200 bits (101), Expect = 1e-048
Identities = 173/197 (87%)
Strand = Plus / Plus
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| |||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct: 31717418 gaactgatcattgtaactattgaatgttgctagtaactgtgctttgctccttgtggtgag 31717477
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || ||||| || || |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 31717478 aatcctgatgatttcatcgtcactgtaagccttgtcatggatcttctcatggagtatttt 31717537
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
|||||||||||| ||||| ||||||||||||||||| ||||||||||| || || | ||
Sbjct: 31717538 ggcttcagaatgtgccaacgatgtgttcacctctggcccatcatagcgatatacagtcac 31717597
Query: 697 aagaggcactaaaagct 713
||| ||||| |||||||
Sbjct: 31717598 aagtggcaccaaaagct 31717614
Score = 182 bits (92), Expect = 3e-043
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
|||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 31718497 ctcgaatttgccgtggatctcgtcgttgagggcgcggagcagctcctcgccgtacgcctc 31718556
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 31718557 ggcgtaggcgcggcggatcgcccggcgctgcgccgcgtcgcggtgggcgaggatggagat 31718616
Query: 1051 gatcagcttctcgttggtgcccca 1074
||| ||||||||||| ||||||||
Sbjct: 31718617 gatgagcttctcgttcgtgcccca 31718640
Score = 79.8 bits (40), Expect = 3e-012
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1075 accttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaagg 1134
||||| ||| |||||| | ||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 31718740 acctttgaacgccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcggg 31718799
Query: 1135 aacggtgagcgtcgccattg 1154
|||||||||||||||||||
Sbjct: 31718800 cacggtgagcgtcgccattg 31718819
>gb|CB678978.1|CB678978 OSJNEf01O24.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01O24 3', mRNA sequence
Length = 371
Score = 198 bits (100), Expect = 5e-048
Identities = 253/304 (83%)
Strand = Plus / Plus
Query: 377 gtgcccatgcctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtg 436
|||||| | ||||| ||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct: 68 gtgcccgttcctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtg 127
Query: 437 aagcaccggatgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcaga 496
||||| | |||||||||| | ||| ||| ||||||||||| | |||||||| | |
Sbjct: 128 aagcatcttatgatcgcccttactgtaccaaggaactcatccttacgatcagctttaaca 187
Query: 497 tccttgttgattgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctga 556
||||| |||||| ||| ||||||||| ||| | ||| |||||||||| | || |||
Sbjct: 188 tccttaatgattggatggccgaactgatcattggaactagtgaatgttgctaataactgt 247
Query: 557 gctttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatgg 616
|||||||||| ||||| |||||| || ||||| || || |||||||||||||| | ||||
Sbjct: 248 gctttgctccttgtggcgagaatcctgatgatttcatcgtcactgtaagccttgtcatgg 307
Query: 617 atcttctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggcca 676
||||||||||| |||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 308 atcttctcatggagtattttggcttcgaaatgtgccaacaatgtgttcacctctggccca 367
Query: 677 tcat 680
||||
Sbjct: 368 tcat 371
>gb|AU057045.1|AU057045 AU057045 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21089_2Z, mRNA sequence
Length = 716
Score = 190 bits (96), Expect = 1e-045
Identities = 260/310 (83%), Gaps = 4/310 (1%)
Strand = Plus / Minus
Query: 377 gtgcccatgcctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtg 436
|||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct: 369 gtgcccattcctcctagagccaatcgaatgactttctcaaagtatctgtcagggcaagtg 310
Query: 437 aagcaccggatgatcgcccgcagtgttgaaagaaactcatccttggggtcagctttcaga 496
||||| | |||||||||| ||||| ||| ||||| ||||| || |||||||| |||
Sbjct: 309 aagcatcttatgatcgcccttagtgtaccaaggaactcgtccttaggatcagctttaaga 250
Query: 497 tccttgttgattgcatgagtgaactgatccttgtagctattgaatgttgcaagtagctg- 555
||||| |||||| ||| ||||||||| ||||| |||||||||||||| |||| |||
Sbjct: 249 tccttagtgattggatggccgaactgatcattgtaactattgaatgttgctagtaactgt 190
Query: 556 agctttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatg 615
|||||||||| |||||||||||| || |||| || || |||||||||||||| | |||
Sbjct: 189 ggctttgctccttgtggtgagaatcctgntgatttcatcgtcactgtaagccttgtcatg 130
Query: 616 gatcttctcatgaagtatttt-ggcttcagaatg-agccaaagatgtgttcacctct-gg 672
|||||||||||| |||||| |||||||||||| ||||||| ||||| | |||| ||
Sbjct: 129 gatcttctcatgggatattttgggcttcagaatgtggccaaaggagtgttnaactctggg 70
Query: 673 gccatcatag 682
||||||||||
Sbjct: 69 gccatcatag 60
Score = 129 bits (65), Expect = 4e-027
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 540 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 481
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 480 gcaacagctcgctccaatgggacactgtttctcttctggtaggcctcctttatcagcttc 421
Query: 326 aggtcgacctcgg 338
||||| |||||||
Sbjct: 420 aggtctacctcgg 408
>gb|C72574.1|C72574 C72574 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1856_1A, mRNA sequence
Length = 461
Score = 141 bits (71), Expect = 1e-030
Identities = 110/123 (89%)
Strand = Plus / Minus
Query: 1030 gcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggcctt 1089
|||||||||||||||||||||||| ||| |||||| |||||||| |||| |||||||||
Sbjct: 176 gcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttggaaggcctt 117
Query: 1090 gtggagctgctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgc 1149
| ||||||| |||||||| |||||||||| |||||||| ||| || ||||||||||||||
Sbjct: 116 gcggagctggtcgcagtcgtcggcgacgggcgggacggcggaggggacggtgagcgtcgc 57
Query: 1150 cat 1152
|||
Sbjct: 56 cat 54
Score = 73.8 bits (37), Expect = 2e-010
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 895 ctccgcggggtccagcgtccacaggatcaccgccctctcgaacttgccgtggatctcgtc 954
|||||| ||||||||||||||||||||||| ||||||||||| | |||| |||||||||
Sbjct: 310 ctccgccgggtccagcgtccacaggatcacggccctctcgaagtcgccggagatctcgtc 251
Query: 955 g 955
|
Sbjct: 250 g 250
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0516A04
Length = 145107
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 56382 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 56323
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 56322 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 56263
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 56262 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 56203
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 56202 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 56160
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 58309 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 58250
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 58249 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 58190
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 58189 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 58130
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 58129 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 58081
Score = 105 bits (53), Expect = 6e-020
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||||||| |||||||||| ||||| ||||||||
Sbjct: 56017 gcggaggagctcctcgccgtaggtgtcggcgtaggcgcggcggatggcgcgccgctgcgc 55958
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 55957 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 55901
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 55783 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 55724
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 55723 ggacggtgagcgtcgccat 55705
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 57162 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 57103
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 57102 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 57043
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 57042 ctttgtgttgacttccggcccctcatagcggtaagcact 57004
>gb|AACV01013320.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013320, whole
genome shotgun sequence
Length = 11613
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Plus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 8111 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 8170
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 8171 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 8230
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 8231 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 8290
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 8291 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 8333
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Plus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 6184 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 6243
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 6244 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 6303
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 6304 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 6363
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 6364 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 6412
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 8711 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 8770
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 8771 ggacggtgagcgtcgccat 8789
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Plus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 7331 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 7390
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 7391 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 7450
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 7451 ctttgtgttgacttccggcccctcatagcggtaagcact 7489
Score = 81.8 bits (41), Expect = 9e-013
Identities = 98/117 (83%)
Strand = Plus / Plus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||| ||| | |||||||| ||||| || |||||
Sbjct: 8476 gcggaggagctcctcgccgtaggtgtcggcttaggcccggcggatggcgcgccgttgcgc 8535
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 8536 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 8592
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 1953886 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 1953827
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 1953826 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 1953767
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 1953766 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 1953707
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 1953706 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 1953664
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 1955813 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 1955754
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 1955753 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 1955694
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 1955693 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 1955634
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 1955633 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 1955585
Score = 105 bits (53), Expect = 6e-020
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||||||| |||||||||| ||||| ||||||||
Sbjct: 1953521 gcggaggagctcctcgccgtaggtgtcggcgtaggcgcggcggatggcgcgccgctgcgc 1953462
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 1953461 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 1953405
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 1953287 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 1953228
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 1953227 ggacggtgagcgtcgccat 1953209
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 1954666 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 1954607
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 1954606 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 1954547
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 1954546 ctttgtgttgacttccggcccctcatagcggtaagcact 1954508
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 6185747 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 6185688
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 6185687 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 6185628
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 6185627 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 6185568
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 6185567 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 6185525
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 6187674 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 6187615
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 6187614 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 6187555
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 6187554 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 6187495
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 6187494 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 6187446
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 6185147 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 6185088
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 6185087 ggacggtgagcgtcgccat 6185069
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 6186527 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 6186468
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 6186467 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 6186408
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 6186407 ctttgtgttgacttccggcccctcatagcggtaagcact 6186369
Score = 81.8 bits (41), Expect = 9e-013
Identities = 98/117 (83%)
Strand = Plus / Minus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||| ||| | |||||||| ||||| || |||||
Sbjct: 6185382 gcggaggagctcctcgccgtaggtgtcggcttaggcccggcggatggcgcgccgttgcgc 6185323
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 6185322 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 6185266
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 6185747 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 6185688
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 6185687 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 6185628
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 6185627 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 6185568
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 6185567 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 6185525
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 6187674 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 6187615
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 6187614 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 6187555
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 6187554 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 6187495
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 6187494 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 6187446
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 6185147 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 6185088
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 6185087 ggacggtgagcgtcgccat 6185069
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 6186527 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 6186468
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 6186467 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 6186408
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 6186407 ctttgtgttgacttccggcccctcatagcggtaagcact 6186369
Score = 81.8 bits (41), Expect = 9e-013
Identities = 98/117 (83%)
Strand = Plus / Minus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||| ||| | |||||||| ||||| || |||||
Sbjct: 6185382 gcggaggagctcctcgccgtaggtgtcggcttaggcccggcggatggcgcgccgttgcgc 6185323
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 6185322 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 6185266
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 127 bits (64), Expect = 2e-026
Identities = 183/223 (82%), Gaps = 6/223 (2%)
Strand = Plus / Minus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct: 6262306 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgcttgaagcgctcg 6262247
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccacc 835
||||| |||||| ||||||| || ||||||||||| |||||||||||||||||| |||
Sbjct: 6262246 tggtaggcctgcctgaccgcgaacagctgcgcggggccgcgcgcgcacgcgatctcgacc 6262187
Query: 836 agcgcgcggccgccg------gggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
||| |||||| ||| |||| | |||| |||| ||||||| || |||||||||
Sbjct: 6262186 agcacgcggctcccgctccctgggtaccacttcctcgcgacctcgttggcgagcaccgcg 6262127
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|| | |||||| ||||||||||||||||||||||| |||||||
Sbjct: 6262126 tcgcgctccgccgggtccagcgtccacaggatcacggccctct 6262084
Score = 113 bits (57), Expect = 2e-022
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 272 gcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcg 331
|||||||||||||| |||||||| |||||||| || |||||| | ||||||||||| ||
Sbjct: 6264233 gcacgctccagcgggacactgttcctcttctggtacgcctccgtgatcagcttcagatcc 6264174
Query: 332 acctcggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctcca 391
|||||||| ||||| || | || ||| |||||| | ||| || || ||||||||| |
Sbjct: 6264173 acctcggcacgagtggtaatgatcctagtgagggagttctcgtctgttcccatgcctgcg 6264114
Query: 392 agagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatc 451
| |||| | ||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 6264113 atggccaacctgatgactttctcgaagtacctgtcagggcaacagaagcagcggatgatt 6264054
Query: 452 gcccgcagtgttgaaagaaactcatccttggggtcagctttcagatcct 500
|| ||||| || ||||| ||||| |||||||| ||||| || |||||||
Sbjct: 6264053 gcacgcagcgtggaaaggaactcgtccttgggatcagccttgagatcct 6264005
Score = 105 bits (53), Expect = 6e-020
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 964 gcggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgc 1023
|||||| ||||||| ||||| | ||||||||| |||||||||| ||||| ||||||||
Sbjct: 6261941 gcggaggagctcctcgccgtaggtgtcggcgtaggcgcggcggatggcgcgccgctgcgc 6261882
Query: 1024 ggcgttgcggtgggccaggatggagatgatcagcttctcgttggtgccccaaccttc 1080
|||| |||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct: 6261881 cgcgtcgcggtgggccaggatggagatgatgagcgcctcgttcgtgccccacccttc 6261825
Score = 93.7 bits (47), Expect = 2e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 1074 aaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaag 1133
|||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| ||| |
Sbjct: 6261707 aaccttggaaggccttgcggagctggtcgcagtcgtcggcgacgggcgggacggcggagg 6261648
Query: 1134 gaacggtgagcgtcgccat 1152
| |||||||||||||||||
Sbjct: 6261647 ggacggtgagcgtcgccat 6261629
Score = 85.7 bits (43), Expect = 5e-014
Identities = 130/159 (81%)
Strand = Plus / Minus
Query: 535 attgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctc 594
||||||||| |||| | |||||| ||||||| || ||||||||||| |||||||| ||
Sbjct: 6263086 attgaatgtcgcaatcaactgagccttgctcctagtagtgagaattctgatgatctcatc 6263027
Query: 595 atcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaa 654
||||| || ||||| | |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 6263026 atcaccatatgccttatgctggatcttctcatgcagaattttggcttctgaatgtgccaa 6262967
Query: 655 agatgtgttcacctctgggccatcatagcggtacgcact 693
|||||| || || || || ||||||||||| |||||
Sbjct: 6262966 ctttgtgttgacttccggcccctcatagcggtaagcact 6262928
>gb|AU094780.1|AU094780 AU094780 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31628, mRNA sequence
Length = 458
Score = 117 bits (59), Expect = 2e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 206 cctcactccgccccaaggagggcaagcataatatcctcataatctctagttgtatctttg 265
|||||||| || |||||||||||||| | |||||||| || ||||| |||||||||||
Sbjct: 277 cctcactctgctccaaggagggcaaggagtatatcctcgtagtctctggttgtatcttta 218
Query: 266 gccacagcacgctccagcggcacactgtttctcttctgataagcctcctttatcagcttc 325
|| ||||| ||||||| || |||||| |||||||||| || ||||||||||||||||||
Sbjct: 217 gcaacagctcgctccaatgggacactgnttctcttctggtaggcctcctttatcagcttc 158
Query: 326 aggtcgacctcgg 338
||| | |||||||
Sbjct: 157 aggnctacctcgg 145
Score = 89.7 bits (45), Expect = 4e-015
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 377 gtgcccatgcctccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtg 436
|||||||| ||||| ||||||| ||||||| ||||||| ||||||||||||||||| |||
Sbjct: 107 gtgcccattcctcctagagccaatcgaatgnctttctcaaagtatctgtcagggcaagtg 48
Query: 437 aagcaccggatgatcgccc 455
||||| | ||||||||||
Sbjct: 47 aagcatctnatgatcgccc 29
>gb|CG409380.1|CG409380 Ds377 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 167
Score = 113 bits (57), Expect = 2e-022
Identities = 90/101 (89%)
Strand = Plus / Minus
Query: 613 atggatcttctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgg 672
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 162 atggatcttctcatggagtattttggcttcagaatgtgccaacgatgtgttcacctctgg 103
Query: 673 gccatcatagcggtacgcactaacaagaggcactaaaagct 713
||||||||||| || || | ||||| ||||| |||||||
Sbjct: 102 cccatcatagcgatatacagtcacaagtggcaccaaaagct 62
>gb|CV723424.1|CV723424 root--03-I12.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone root--03-I12,
mRNA sequence
Length = 128
Score = 75.8 bits (38), Expect = 5e-011
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 1085 gccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagc 1144
|||||| | ||||||||||||||||||||||||| ||| |||| || || |||||||||
Sbjct: 121 gccttgcgcagctgctcgcagtcctcggcgacgggcggcacggcggcgggcacggtgagc 62
Query: 1145 gtcgccattg 1154
||||||||||
Sbjct: 61 gtcgccattg 52
>gb|AQ328864.1|AQ328864 nbxb0043P20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0043P20r, DNA sequence
Length = 743
Score = 60.0 bits (30), Expect = 3e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
|||||||| || ||| | ||||| || ||||||||||||||||| |||| || || ||
Sbjct: 443 cggaagtcaccagtggcgtgcgccgcgacgtcctcctcgagcgagcgctngaagcgctcg 502
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcg 808
||||| |||||| ||||||| || |||||||||
Sbjct: 503 tggtaggcctgcctgaccgcgaacagctgcgcg 535
>gb|AQ914573.1|AQ914573 nbeb0049O15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0049O15f, DNA sequence
Length = 827
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 576 gaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattt 635
||||||| |||||||| ||||| | || ||||| | |||||||||||||| || ||||
Sbjct: 33 gaattcttatgatctcatcatccccatatgccttatgctggatcttctcatgcagaattt 92
Query: 636 tggcttcagaatgagccaa 654
||||||| ||||| |||||
Sbjct: 93 tggcttctgaatgtgccaa 111
>gb|AZ133613.1|AZ133613 OSJNBb0109A04f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0109A04f, DNA
sequence
Length = 771
Score = 44.1 bits (22), Expect = 0.19
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 576 gaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattt 635
||||||| ||||||| ||||||| || ||||| | |||||||||||||| || ||||
Sbjct: 28 gaattctgttgatctcatcatcaccatatgccttatgctggatcttctcatgcagaattt 87
Query: 636 tggctt 641
||||||
Sbjct: 88 tggctt 93
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,890,986
Number of Sequences: 438736
Number of extensions: 1890986
Number of successful extensions: 12093
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11813
Number of HSP's gapped (non-prelim): 266
length of query: 1286
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1265
effective length of database: 2,791,206,460
effective search space: 3530876171900
effective search space used: 3530876171900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)