BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_474161.1| Oryza sativa (japonica cultivar-group), p... 882 0.0
gb|CB000030.1|CB000030 S345W_A03 Rice cold stress germinati... 504 e-140
gb|CF196374.1|CF196374 Azvi2.2_C02 AZ-VI Oryza sativa (japo... 432 e-118
gb|CF322744.1|CF322744 HDN--01-P05.g1 OsHDAC1-overexpressin... 412 e-112
gb|CB670503.1|CB670503 OSJNEe03J17.r OSJNEe Oryza sativa (j... 410 e-112
gb|CA998741.1|CA998741 S345I_D06 Rice cold stress germinati... 396 e-107
gb|CB670323.1|CB670323 OSJNEe03F12.f OSJNEe Oryza sativa (j... 383 e-103
gb|CF304666.1|CF304666 ABF1--05-J20.g1 ABF3-overexpressing ... 315 3e-083
gb|CF304183.1|CF304183 ABF1--04-E17.g1 ABF3-overexpressing ... 210 1e-051
gb|CF324379.1|CF324379 HDN--06-G01.g1 OsHDAC1-overexpressin... 190 1e-045
dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA... 155 7e-035
dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA... 155 7e-035
dbj|AK101320.1| Oryza sativa (japonica cultivar-group) cDNA... 155 7e-035
ref|XM_480935.1| Oryza sativa (japonica cultivar-group), mRNA 155 7e-035
ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-... 155 7e-035
dbj|AK102060.1| Oryza sativa (japonica cultivar-group) cDNA... 145 7e-032
gb|CB683364.1|CB683364 OSJNEf11K13.f OSJNEf Oryza sativa (j... 139 4e-030
gb|AACV01010599.1| Oryza sativa (japonica cultivar-group) c... 137 2e-029
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 137 2e-029
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromoso... 137 2e-029
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 137 2e-029
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 137 2e-029
gb|C28554.1|C28554 C28554 Rice callus cDNA Oryza sativa (ja... 113 3e-022
gb|AQ861297.1|AQ861297 nbeb0016B13r CUGI Rice BAC Library (... 101 1e-018
gb|CA999107.1|CA999107 S234N_D11 Rice cold stress germinati... 84 2e-013
gb|CB000429.1|CB000429 S345Y_G07 Rice cold stress germinati... 70 3e-009
dbj|AP005478.3| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01017722.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
dbj|AP004690.3| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 3e-009
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromo... 64 2e-007
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 64 2e-007
dbj|AP005090.3| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|AACV01020537.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 64 2e-007
gb|AU068539.1|AU068539 AU068539 Rice callus Oryza sativa (j... 56 5e-005
gb|CA754289.1|CA754289 BR040013000_PLATE_G07_55_055.ab1 OA ... 48 0.012
dbj|AG211221.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.049
>ref|XM_474161.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2088
Score = 882 bits (445), Expect = 0.0
Identities = 811/933 (86%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgct 81
||||| |||||||| |||||| |||||||||||||||| ||| | || ||||||||||||
Sbjct: 1156 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaaggctgct 1215
Query: 82 ttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttcttg 141
||| ||||||||||| ||||||| ||||| | ||||||||||||| || | || || |||
Sbjct: 1216 ttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattgagatttttg 1275
Query: 142 gcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtctt 201
|| || ||||||||||||||||| |||||||||||| || ||||| || || || |||
Sbjct: 1276 gcttcccctgctggaaaggatgaatattctcaatgggtagtagctagccaaagaagcctt 1335
Query: 202 cttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagca 261
||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||
Sbjct: 1336 cttgaagttatggctgcattcccttcagctaagcccccactgggagtattctttgcagct 1395
Query: 262 atagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccc 321
| || ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 1396 gttgcacctcgcctacaaccgcgttactactccatatcatcatctccaaagatggctcct 1455
Query: 322 tccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccac 381
||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| |||
Sbjct: 1456 tccagaattcatgtaacatgtgcgttagtttatggacctacaccaacgggaaggattcac 1515
Query: 382 caaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgc 441
|||||||||||||| |||||||||||||| |||| || |||||||| ||||| ||
Sbjct: 1516 caaggagtttgttcgacatggatgaagaacgcaatcccatcagaatatagtgaagagtgt 1575
Query: 442 agctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatccact 501
|||||||| || || | |||||||||||||||||| ||||| ||||| || || |||||
Sbjct: 1576 agctgggcaccaatttatgtgaggcagtcaaattttaagttgcctgcagatccgaccact 1635
Query: 502 ccgattatcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaa 561
|| |||||||||||||||||||| |||||| | || || |||||||||||||||||||||
Sbjct: 1636 ccaattatcatgattggtcctggtacagggttagcaccatttagaggcttcttgcaggaa 1695
Query: 562 aggttagcactgaaacaatctggagcagaactgggcacttcaatccttttctttggatgc 621
|| ||||| || ||||||||||||| |||||||||| |||| | || ||||||||||||
Sbjct: 1696 agattagctctaaaacaatctggagttgaactgggcaattcagttctcttctttggatgc 1755
Query: 622 aggaaccgtaatatggactacatatatgaagatgagttgcaaactttccttgaggagggg 681
|||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||
Sbjct: 1756 aggaaccgtaatatggactacatatatgaagacgagttgcaaaacttcattcaggagggt 1815
Query: 682 gcgctttctgagctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcag 741
|| ||||||||||| |||||||| |||||||| ||||| ||| | |||||||| ||||||
Sbjct: 1816 gcactttctgagctgattgttgccttctctcgtgaaggaccagccaaagaatacgtgcag 1875
Query: 742 cataagatggtggaaaaggccacagatatttggaacatcatctcaaatggtggttactta 801
||||||||| || ||||||||||| |||||||||||| ||||| | ||||||||| ||
Sbjct: 1876 cataagatgacagagaaggccacagaaatttggaacatcgtctcacaaggtggttacata 1935
Query: 802 tatgtttgcggtgatgccaagggaatggctagagatgtacacaaaatgcttcatacaata 861
||||| ||||||||||||||||| ||||| ||||| ||||||| | |||||||||||
Sbjct: 1936 tatgtgtgcggtgatgccaagggtatggcaagagacgtacacagagctcttcatacaatt 1995
Query: 862 gtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagcctgcag 921
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1996 gttcaagagcagggatctttggatagctccaaaaccgagagctatgtaaagagcctacag 2055
Query: 922 atggaaggaaggtacctccgtgatgtatggtga 954
||||| || |||||||||||||| |||||||||
Sbjct: 2056 atggacggcaggtacctccgtgacgtatggtga 2088
>gb|CB000030.1|CB000030 S345W_A03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 578
Score = 504 bits (254), Expect = e-140
Identities = 455/522 (87%)
Strand = Plus / Plus
Query: 277 caaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatgta 336
||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 54 caaccgcgttactactccatatcatcatctccaaagatggctccttccagaattcatgta 113
Query: 337 acatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttca 396
|||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 114 acatgtgcgttagtttatggacctacaccaacgggaaggattcaccaaggagtttgttcg 173
Query: 397 acatggatgaagaatacaattcctctggaatatagcgaagaatgcagctgggctcccata 456
|||||||||||||| |||| || |||||||| ||||| || |||||||| || ||
Sbjct: 174 acatggatgaagaacgcaatcccatcagaatatagtgaagagtgtagctgggcaccaatt 233
Query: 457 tttgtgaggcagtcaaatttcaagttacctgctgacccatccactccgattatcatgatt 516
| |||||||||||||||||| ||||| ||||| || || ||||||| ||||||||||||
Sbjct: 234 tatgtgaggcagtcaaattttaagttgcctgcagatccgaccactccaattatcatgatt 293
Query: 517 ggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
|||||||| |||||| | || || ||||||||||||||||||||||| ||||| || |||
Sbjct: 294 ggtcctggtacagggttagcaccatttagaggcttcttgcaggaaagattagctctaaaa 353
Query: 577 caatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccgtaatatg 636
|||||||||| |||||||||| |||| | || |||||||||||||||||||||||||||
Sbjct: 354 caatctggagttgaactgggcaattcagttctcttctttggatgcaggaaccgtaatatg 413
Query: 637 gactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagcta 696
||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 414 gactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagctg 473
Query: 697 attgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtggaa 756
|||||||| |||||||| ||||| ||| | |||||||| ||||||||||||||| ||
Sbjct: 474 attgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatgacagag 533
Query: 757 aaggccacagatatttggaacatcatctcaaatggtggttac 798
||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 534 aaggccacagaaatttggaacatcatctcacaaggtggttac 575
>gb|CF196374.1|CF196374 Azvi2.2_C02 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2C02 5', mRNA sequence
Length = 538
Score = 432 bits (218), Expect = e-118
Identities = 389/446 (87%)
Strand = Plus / Plus
Query: 268 cctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctccaga 327
||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 24 cctcgcctacaaccgcgttactactccatatcatcatctccaaagatggctccttccaga 83
Query: 328 attcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaagga 387
||||||||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||||
Sbjct: 84 attcatgtaacatgtgcgttagtttatggacctacaccaacgggaaggattcaccaagga 143
Query: 388 gtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgcagctgg 447
|||||||| |||||||||||||| |||| || |||||||| ||||| || ||||||
Sbjct: 144 gtttgttcgacatggatgaagaacgcaatcccatcagaatatagtgaagagtgtagctgg 203
Query: 448 gctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatccactccgatt 507
|| || || | |||||||||||||||||| ||||| ||||| || || ||||||| |||
Sbjct: 204 gcaccaatttatgtgaggcagtcaaattttaagttgcctgcagatccgaccactccaatt 263
Query: 508 atcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggtta 567
||||||||||||||||| |||||| | || || ||||||||||||||||||||||| |||
Sbjct: 264 atcatgattggtcctggtacagggttagcaccatttagaggcttcttgcaggaaagatta 323
Query: 568 gcactgaaacaatctggagcagaactgggcacttcaatccttttctttggatgcaggaac 627
|| || ||||||||||||| |||||||||| |||| | || ||||||||||||||||||
Sbjct: 324 gctctaaaacaatctggagttgaactgggcaattcagttctcttctttggatgcaggaac 383
Query: 628 cgtaatatggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctt 687
|||||||||||||||||||||||||| |||||||||| ||| || ||||||| || |||
Sbjct: 384 cgtaatatggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactt 443
Query: 688 tctgagctaattgttgcattctctcg 713
|||||||| |||||||| ||||||||
Sbjct: 444 tctgagctgattgttgccttctctcg 469
>gb|CF322744.1|CF322744 HDN--01-P05.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--01-P05, mRNA sequence
Length = 597
Score = 412 bits (208), Expect = e-112
Identities = 340/384 (88%)
Strand = Plus / Plus
Query: 574 aaacaatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccgtaat 633
||||||||||||| |||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 14 aaacaatctggagttgaactgggcaattcagttctcttctttggatgcaggaaccgtaat 73
Query: 634 atggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgag 693
|||||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||
Sbjct: 74 atggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgag 133
Query: 694 ctaattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtg 753
|| |||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 134 ctgattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatgaca 193
Query: 754 gaaaaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggt 813
|| ||||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||
Sbjct: 194 gagaaggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggt 253
Query: 814 gatgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcag 873
||||||||||| ||||| ||||| ||||||| | ||||||||||| || |||||||||
Sbjct: 254 gatgccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcag 313
Query: 874 ggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaagg 933
||||||||||||| |||||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 314 ggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggcagg 373
Query: 934 tacctccgtgatgtatggtgacac 957
||||||||||| ||||||||||||
Sbjct: 374 tacctccgtgacgtatggtgacac 397
>gb|CB670503.1|CB670503 OSJNEe03J17.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03J17 3', mRNA sequence
Length = 831
Score = 410 bits (207), Expect = e-112
Identities = 339/383 (88%)
Strand = Plus / Minus
Query: 575 aacaatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccgtaata 634
|||||||||||| |||||||||| |||| | || |||||||||||||||||||||||||
Sbjct: 831 aacaatctggagttgaactgggcaattcagttctcttctttggatgcaggaaccgtaata 772
Query: 635 tggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagc 694
||||||||||||||||||| |||||||||| ||| || ||||||| || ||||||||||
Sbjct: 771 tggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagc 712
Query: 695 taattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatggtgg 754
| |||||||| |||||||| ||||| ||| | |||||||| ||||||||||||||| |
Sbjct: 711 tgattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatgacag 652
Query: 755 aaaaggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtg 814
| ||||||||||| |||||||||||| ||||| | ||||||||| ||||||| |||||||
Sbjct: 651 agaaggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtg 592
Query: 815 atgccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
|||||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 591 atgccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 532
Query: 875 gatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaaggaaggt 934
|||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 531 gatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggcaggt 472
Query: 935 acctccgtgatgtatggtgacac 957
|||||||||| ||||||||||||
Sbjct: 471 acctccgtgacgtatggtgacac 449
>gb|CA998741.1|CA998741 S345I_D06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 433
Score = 396 bits (200), Expect = e-107
Identities = 341/388 (87%)
Strand = Plus / Plus
Query: 277 caaccacgatactactcaatttcatcatctccaaagatggctccctccagaattcatgta 336
||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 38 caaccgcgttactactccatatcatcatctccaaagatggctccttccagaattcatgta 97
Query: 337 acatgtgcattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttca 396
|||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 98 acatgtgcgttagtttatggacctacaccaacgggaaggattcaccaaggagtttgttcg 157
Query: 397 acatggatgaagaatacaattcctctggaatatagcgaagaatgcagctgggctcccata 456
|||||||||||||| |||| || |||||||| ||||| || |||||||| || ||
Sbjct: 158 acatggatgaagaacgcaatcccatcagaatatagtgaagagtgtagctgggcaccaatt 217
Query: 457 tttgtgaggcagtcaaatttcaagttacctgctgacccatccactccgattatcatgatt 516
| |||||||||||||||||| ||||| ||||| || || ||||||| ||||||||||||
Sbjct: 218 tatgtgaggcagtcaaattttaagttgcctgcagatccgaccactccaattatcatgatt 277
Query: 517 ggtcctgggacagggctggctccttttagaggcttcttgcaggaaaggttagcactgaaa 576
|||||||| |||||| | || || ||||||||||||||||||||||| ||||| || |||
Sbjct: 278 ggtcctggtacagggttagcaccatttagaggcttcttgcaggaaagattagctctaaaa 337
Query: 577 caatctggagcagaactgggcacttcaatccttttctttggatgcaggaaccgtaatatg 636
|||||||||| |||||||||| |||| | || |||||||||||||||||||||||||||
Sbjct: 338 caatctggagttgaactgggcaattcagttctcttctttggatgcaggaaccgtaatatg 397
Query: 637 gactacatatatgaagatgagttgcaaa 664
||||||||||||||||| ||||||||||
Sbjct: 398 gactacatatatgaagacgagttgcaaa 425
>gb|CB670323.1|CB670323 OSJNEe03F12.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03F12 5', mRNA sequence
Length = 846
Score = 383 bits (193), Expect = e-103
Identities = 340/389 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgct 81
||||| |||||||| |||||| |||||||||||||||| ||| | || ||||||||||||
Sbjct: 409 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaaggctgct 468
Query: 82 ttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttcttg 141
||| ||||||||||| ||||||| ||||| | ||||||||||||| || | || || |||
Sbjct: 469 ttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattgagatttttg 528
Query: 142 gcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtctt 201
|| || ||||||||||||||||| |||||||||||| || ||||| || || || |||
Sbjct: 529 gcttcccctgctggaaaggatgaatattctcaatgggtagtagctagccaaagaagcctt 588
Query: 202 cttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagca 261
||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||
Sbjct: 589 cttgaagttatggctgcattcccttcagctaagcccccactgggagtattctttgcagct 648
Query: 262 atagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccc 321
| || ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 649 gttgcacctcgcctacaaccgcgttactactccatatcatcatctccaaagatggctcct 708
Query: 322 tccagaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccac 381
||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||| |||
Sbjct: 709 tccagaattcatgtaacatgtgcgttagtttatggacctacaccaacgggaaggattcac 768
Query: 382 caaggagtttgttcaacatggatgaagaa 410
|||||||||||||| ||||||||||||||
Sbjct: 769 caaggagtttgttcgacatggatgaagaa 797
>gb|CF304666.1|CF304666 ABF1--05-J20.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--05-J20, mRNA sequence
Length = 520
Score = 315 bits (159), Expect = 3e-083
Identities = 300/347 (86%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgct 81
||||| |||||||| |||||| ||||||||||||||| ||| | || ||||||||||||
Sbjct: 173 accttacggactgcacttctaacatatgctgatctacttaattctccaaagaaggctgct 232
Query: 82 ttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttcttg 141
||| ||||||||||| ||||||| ||||| | ||||||||||||| || | || || |||
Sbjct: 233 ttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattgagatttttg 292
Query: 142 gcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtctt 201
|| || ||||||||||||||||| |||||||||||| || ||||| || || || |||
Sbjct: 293 gcttcccctgctggaaaggatgaatattctcaatgggtagtagctagccaaagaagcctt 352
Query: 202 cttgaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagca 261
||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||
Sbjct: 353 cttgaagttatggctgcattcccttcagctaagcccccactgggagtattctttgcagct 412
Query: 262 atagctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccc 321
| || ||||| || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct: 413 gttgcacctcgcctacaaccgcgttactactccatatcatcatctccaaagatggctcct 472
Query: 322 tccagaattcatgtaacatgtgcattagtttatgggccttcaccaac 368
||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 473 tccagaattcatgtaacatgtgcgttagtttatggacctacaccaac 519
>gb|CF304183.1|CF304183 ABF1--04-E17.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-E17, mRNA sequence
Length = 313
Score = 210 bits (106), Expect = 1e-051
Identities = 256/306 (83%)
Strand = Plus / Plus
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||||||||| ||||||||||| || || ||||| | || ||||| || ||||| |
Sbjct: 8 cttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctacaaccgc 67
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 68 gttactactccatatcatcatctccaaagatggctccttccagaattcatgtaacatgtg 127
Query: 344 cattagtttatgggccttcaccaacaggaaggatccaccaaggagtttgttcaacatgga 403
| ||||||||||| ||| || ||| | |||||| |||||| |||||||||| |||||||
Sbjct: 128 cgttagtttatggacctacatcaatggtaaggattcaccaatgagtttgttcgacatgga 187
Query: 404 tgaagaatacaattcctctggaatatagcgaagaatgcagctgggctcccatatttgtga 463
||||||| |||| || ||||||| ||||| || |||||||| || || | |||||
Sbjct: 188 tgaagaacgcaatcccatcataatatagtgaagagtgtagctgggcaccaatttatgtga 247
Query: 464 ggcagtcaaatttcaagttacctgctgacccatccactccgattatcatgattggtcctg 523
||||||||||||| ||||| ||||| || || ||||| | |||||||||||||| ||||
Sbjct: 248 ggcagtcaaattttaagttgcctgcagatccgaccactacaattatcatgattggacctg 307
Query: 524 ggacag 529
| ||||
Sbjct: 308 gaacag 313
>gb|CF324379.1|CF324379 HDN--06-G01.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-G01, mRNA sequence
Length = 360
Score = 190 bits (96), Expect = 1e-045
Identities = 180/208 (86%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgct 81
||||| |||||||| |||||| |||||||||||||||| ||| | || ||||||||||||
Sbjct: 153 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaaggctgct 212
Query: 82 ttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggttcttg 141
||| ||||||||||| ||||||| ||||| | ||||||||||||| || | || || |||
Sbjct: 213 ttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattgagatttttg 272
Query: 142 gcctctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtctt 201
|| || ||||||||||||||||| |||||||||||| || ||||| || || || |||
Sbjct: 273 gcttcccctgctggaaaggatgaatattctcaatgggtagtagctagccaaagaagcctt 332
Query: 202 cttgaagttatggctgcattcccttcag 229
||||||||||||||||||||||||||||
Sbjct: 333 cttgaagttatggctgcattcccttcag 360
>dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001C12, full
insert sequence
Length = 2298
Score = 155 bits (78), Expect = 7e-035
Identities = 246/302 (81%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 1047 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 1106
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 1107 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 1166
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 1167 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 1226
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 1227 cttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 1286
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 1287 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 1346
Query: 344 ca 345
||
Sbjct: 1347 ca 1348
Score = 56.0 bits (28), Expect = 5e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttc 669
|||||||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||
Sbjct: 1613 ttctttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttc 1672
Query: 670 cttgagga 677
||||||||
Sbjct: 1673 cttgagga 1680
>dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A08, full
insert sequence
Length = 2298
Score = 155 bits (78), Expect = 7e-035
Identities = 246/302 (81%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 1047 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 1106
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 1107 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 1166
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 1167 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 1226
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 1227 cttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 1286
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 1287 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 1346
Query: 344 ca 345
||
Sbjct: 1347 ca 1348
Score = 56.0 bits (28), Expect = 5e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttc 669
|||||||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||
Sbjct: 1613 ttctttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttc 1672
Query: 670 cttgagga 677
||||||||
Sbjct: 1673 cttgagga 1680
>dbj|AK101320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034E03, full
insert sequence
Length = 1714
Score = 155 bits (78), Expect = 7e-035
Identities = 246/302 (81%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 532 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 591
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 592 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 651
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 652 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 711
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 712 cttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 771
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 772 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 831
Query: 344 ca 345
||
Sbjct: 832 ca 833
Score = 56.0 bits (28), Expect = 5e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttc 669
|||||||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||
Sbjct: 1098 ttctttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttc 1157
Query: 670 cttgagga 677
||||||||
Sbjct: 1158 cttgagga 1165
>ref|XM_480935.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2298
Score = 155 bits (78), Expect = 7e-035
Identities = 246/302 (81%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 1047 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 1106
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 1107 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 1166
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 1167 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 1226
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 1227 cttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 1286
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 1287 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 1346
Query: 344 ca 345
||
Sbjct: 1347 ca 1348
Score = 56.0 bits (28), Expect = 5e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttc 669
|||||||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||
Sbjct: 1613 ttctttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttc 1672
Query: 670 cttgagga 677
||||||||
Sbjct: 1673 cttgagga 1680
>ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0070J06.25
mRNA
Length = 2298
Score = 155 bits (78), Expect = 7e-035
Identities = 246/302 (81%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 1047 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 1106
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 1107 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 1166
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 1167 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 1226
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 1227 cttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 1286
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 1287 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 1346
Query: 344 ca 345
||
Sbjct: 1347 ca 1348
Score = 56.0 bits (28), Expect = 5e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 610 ttctttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttc 669
|||||||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||
Sbjct: 1613 ttctttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttc 1672
Query: 670 cttgagga 677
||||||||
Sbjct: 1673 cttgagga 1680
>dbj|AK102060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082D09, full
insert sequence
Length = 2482
Score = 145 bits (73), Expect = 7e-032
Identities = 337/425 (79%)
Strand = Plus / Plus
Query: 145 tctcctgctggaaaggatgagtattctcaatggataactgctagtcagaggagtcttctt 204
||||||||||||||| | |||||||||||||||||| | | ||||| ||||||| |
Sbjct: 1413 tctcctgctggaaagaaggagtattctcaatggatagtttcaagtcaacggagtctcttg 1472
Query: 205 gaagttatggctgcattcccttcagctaagccaccactgggagtgtttttcgcagcaata 264
||||||||| | | ||||| ||||| ||||| ||||| || || || || ||||| ||
Sbjct: 1473 gaagttatgacagagttcccatcagcaaagcctccacttggtgtcttctttgcagccatt 1532
Query: 265 gctcctcgtctgcaaccacgatactactcaatttcatcatctccaaagatggctccctcc 324
|||||||| ||||| || |||||||||| || || || || || | |||| |||| |
Sbjct: 1533 gctcctcgactgcagccgagatactactcgatatcttcctcaccgaggatgactccaaca 1592
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 1593 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 1652
Query: 385 ggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgcagc 444
||||||||||| || ||||||||||| | ||||| ||||| | ||| ||||||| |||
Sbjct: 1653 ggagtttgttctacttggatgaagaactcgattcccttggaagagagccaagaatgtagc 1712
Query: 445 tgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatccactccg 504
|||||||| || ||||| ||||||||||| ||||| | ||| |||| || | ||
Sbjct: 1713 tgggctccaatttttgttaggcagtcaaacttcaaactgcctactgatcctactgtgcct 1772
Query: 505 attatcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaagg 564
||||| ||||| |||||||| || || || || |||||||| |||||||| ||||||||
Sbjct: 1773 attataatgataggtcctggaactggtcttgcaccttttaggggcttcttacaggaaaga 1832
Query: 565 ttagc 569
|||||
Sbjct: 1833 ttagc 1837
Score = 65.9 bits (33), Expect = 5e-008
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 2037 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 2096
Query: 829 gctagagatgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataac 888
|| |||||||||||| | || || || || || || || ||||| |||||||| |||
Sbjct: 2097 gcaagagatgtacaccgcacactacacaccattgtgcaggaacagggttctttggacaac 2156
Query: 889 tccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
|| || || || ||||||||||||||| |||||||||||||
Sbjct: 2157 tcaaacacagaaagctatgtaaagagcttgcagatggaagg 2197
>gb|CB683364.1|CB683364 OSJNEf11K13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11K13 5', mRNA sequence
Length = 744
Score = 139 bits (70), Expect = 4e-030
Identities = 244/302 (80%)
Strand = Plus / Plus
Query: 44 gatatgctgatctactcaatccaccgaagaaggctgctttgcttgctttagcttctcatg 103
||||||| ||||| || ||| | ||||||||| ||||||| |||| |||||| || |||
Sbjct: 120 gatatgcggatcttctgaattcgccgaagaagagtgctttggttgcattagctacttatg 179
Query: 104 catctgatccagctgaagctgaacgacttaggttcttggcctctcctgctggaaaggatg 163
| || ||| | |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct: 180 cttcagattctactgaagctgatcgtctgaggttcttggcctctcctgctggaaaggatg 239
Query: 164 agtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattcc 223
||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| | ||||
Sbjct: 240 agtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcagagttcc 299
Query: 224 cttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaaccac 283
|||| | ||||| ||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct: 300 cttcttcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttcagccga 359
Query: 284 gatactactcaatttcatcatctccaaagatggctccctccagaattcatgtaacatgtg 343
||||||||||||||||||| || || | ||||| || ||||||||||||| |||||||
Sbjct: 360 gatactactcaatttcatcttcacctagcatggcacctaccagaattcatgttacatgtg 419
Query: 344 ca 345
||
Sbjct: 420 ca 421
>gb|AACV01010599.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010599, whole
genome shotgun sequence
Length = 25414
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 5041 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 5100
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 5101 aaggattcaccaaggagtttgttcgacatggatgaag 5137
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 6121 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 6180
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 6181 aggtacctccgtgacgtatggtgacac 6207
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 4522 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 4581
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 4582 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 4641
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 4642 aaccgcgttactactccatatcatcatctccaaag 4676
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 5279 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 5338
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 5339 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 5398
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 5399 agaggcttcttgcagg 5414
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 5658 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 5717
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 5718 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 5772
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 5893 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 5952
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 5953 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 6009
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 5495 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 5554
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 5555 ggatgcaggaaccgtaatatgg 5576
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 4349 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 4408
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 4409 gatttttggcttcccctgctggaaagg 4435
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 4201 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 4255
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 763233 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 763292
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 763293 aaggattcaccaaggagtttgttcgacatggatgaag 763329
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 764313 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 764372
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 764373 aggtacctccgtgacgtatggtgacac 764399
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 762714 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 762773
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 762774 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 762833
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 762834 aaccgcgttactactccatatcatcatctccaaag 762868
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 763471 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 763530
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 763531 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 763590
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 763591 agaggcttcttgcagg 763606
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 763850 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 763909
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 763910 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 763964
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 764085 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 764144
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 764145 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 764201
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 763687 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 763746
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 763747 ggatgcaggaaccgtaatatgg 763768
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 762541 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 762600
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 762601 gatttttggcttcccctgctggaaagg 762627
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 762393 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 762447
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 10960910 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 10960969
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 10960970 aaggattcaccaaggagtttgttcgacatggatgaag 10961006
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 10961990 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 10962049
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 10962050 aggtacctccgtgacgtatggtgacac 10962076
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 10960391 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 10960450
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 10960451 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 10960510
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 10960511 aaccgcgttactactccatatcatcatctccaaag 10960545
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 10961148 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 10961207
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 10961208 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 10961267
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 10961268 agaggcttcttgcagg 10961283
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 10961527 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 10961586
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 10961587 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 10961641
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 10961762 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 10961821
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 10961822 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 10961878
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 10961364 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 10961423
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 10961424 ggatgcaggaaccgtaatatgg 10961445
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 10960218 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 10960277
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 10960278 gatttttggcttcccctgctggaaagg 10960304
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 10960070 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 10960124
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 30105009 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 30105068
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 30105069 aaggattcaccaaggagtttgttcgacatggatgaag 30105105
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 30106089 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 30106148
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 30106149 aggtacctccgtgacgtatggtgacac 30106175
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 30104490 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 30104549
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 30104550 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 30104609
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 30104610 aaccgcgttactactccatatcatcatctccaaag 30104644
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 30105247 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 30105306
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 30105307 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 30105366
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 30105367 agaggcttcttgcagg 30105382
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 30105626 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 30105685
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 30105686 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 30105740
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 30105861 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 30105920
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 30105921 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 30105977
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 30105463 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 30105522
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 30105523 ggatgcaggaaccgtaatatgg 30105544
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 30104317 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 30104376
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 30104377 gatttttggcttcccctgctggaaagg 30104403
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 30104169 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 30104223
>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16,
complete sequence
Length = 119535
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 14084 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 14143
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 14144 aaggattcaccaaggagtttgttcgacatggatgaag 14180
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 15164 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 15223
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 15224 aggtacctccgtgacgtatggtgacac 15250
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 13565 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 13624
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 13625 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 13684
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 13685 aaccgcgttactactccatatcatcatctccaaag 13719
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 14322 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 14381
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 14382 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 14441
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 14442 agaggcttcttgcagg 14457
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 14701 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 14760
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 14761 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 14815
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 14936 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 14995
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 14996 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 15052
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 14538 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 14597
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 14598 ggatgcaggaaccgtaatatgg 14619
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 13392 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 13451
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 13452 gatttttggcttcccctgctggaaagg 13478
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 13244 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 13298
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
complete sequence
Length = 151506
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 140466 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 140525
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 140526 aaggattcaccaaggagtttgttcgacatggatgaag 140562
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 141546 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 141605
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 141606 aggtacctccgtgacgtatggtgacac 141632
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 139947 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 140006
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 140007 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 140066
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 140067 aaccgcgttactactccatatcatcatctccaaag 140101
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 140704 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 140763
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 140764 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 140823
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 140824 agaggcttcttgcagg 140839
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 141083 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 141142
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 141143 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 141197
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 141318 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 141377
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 141378 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 141434
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 140920 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 140979
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 140980 ggatgcaggaaccgtaatatgg 141001
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 139774 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 139833
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 139834 gatttttggcttcccctgctggaaagg 139860
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 139626 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 139680
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 137 bits (69), Expect = 2e-029
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 312 gatggctccctccagaattcatgtaacatgtgcattagtttatgggccttcaccaacagg 371
||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||
Sbjct: 33368205 gatggctccttccagaattcatgtaacatgtgcgttagtttatggacctacaccaacggg 33368264
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaag 408
|||||| ||||||||||||||||| ||||||||||||
Sbjct: 33368265 aaggattcaccaaggagtttgttcgacatggatgaag 33368301
Score = 133 bits (67), Expect = 3e-028
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagga 930
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 33369285 cagggatctttggatagctccaaaaccgagagctatgtaaagagcctacagatggacggc 33369344
Query: 931 aggtacctccgtgatgtatggtgacac 957
|||||||||||||| ||||||||||||
Sbjct: 33369345 aggtacctccgtgacgtatggtgacac 33369371
Score = 125 bits (63), Expect = 7e-026
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 33367686 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 33367745
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||||||||||| ||||||||||| || || ||||| | || ||||| || |
Sbjct: 33367746 cattcccttcagctaagcccccactgggagtattctttgcagctgttgcacctcgcctac 33367805
Query: 278 aaccacgatactactcaatttcatcatctccaaag 312
|||| || |||||||| || |||||||||||||||
Sbjct: 33367806 aaccgcgttactactccatatcatcatctccaaag 33367840
Score = 119 bits (60), Expect = 4e-024
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 424 gaatatagcgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagtta 483
|||||||| ||||| || |||||||| || || | |||||||||||||||||| |||||
Sbjct: 33368443 gaatatagtgaagagtgtagctgggcaccaatttatgtgaggcagtcaaattttaagttg 33368502
Query: 484 cctgctgacccatccactccgattatcatgattggtcctgggacagggctggctcctttt 543
||||| || || ||||||| |||||||||||||||||||| |||||| | || || |||
Sbjct: 33368503 cctgcagatccgaccactccaattatcatgattggtcctggtacagggttagcaccattt 33368562
Query: 544 agaggcttcttgcagg 559
||||||||||||||||
Sbjct: 33368563 agaggcttcttgcagg 33368578
Score = 117 bits (59), Expect = 2e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 636 ggactacatatatgaagatgagttgcaaactttccttgaggagggggcgctttctgagct 695
|||||||||||||||||| |||||||||| ||| || ||||||| || |||||||||||
Sbjct: 33368822 ggactacatatatgaagacgagttgcaaaacttcattcaggagggtgcactttctgagct 33368881
Query: 696 aattgttgcattctctcgggaagggccaacgaaagaatatgtgcagcataagatg 750
|||||||| |||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct: 33368882 gattgttgccttctctcgtgaaggaccagccaaagaatacgtgcagcataagatg 33368936
Score = 113 bits (57), Expect = 3e-022
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 758 aggccacagatatttggaacatcatctcaaatggtggttacttatatgtttgcggtgatg 817
|||||||||| |||||||||||| ||||| | ||||||||| ||||||| ||||||||||
Sbjct: 33369057 aggccacagaaatttggaacatcgtctcacaaggtggttacatatatgtgtgcggtgatg 33369116
Query: 818 ccaagggaatggctagagatgtacacaaaatgcttcatacaatagtccaagagcagg 874
||||||| ||||| ||||| ||||||| | ||||||||||| || ||||||||||
Sbjct: 33369117 ccaagggtatggcaagagacgtacacagagctcttcatacaattgttcaagagcagg 33369173
Score = 91.7 bits (46), Expect = 9e-016
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 556 caggaaaggttagcactgaaacaatctggagcagaactgggcacttcaatccttttcttt 615
|||||||| ||||| || ||||||||||||| |||||||||| |||| | || ||||||
Sbjct: 33368659 caggaaagattagctctaaaacaatctggagttgaactgggcaattcagttctcttcttt 33368718
Query: 616 ggatgcaggaaccgtaatatgg 637
||||||||||||||||||||||
Sbjct: 33368719 ggatgcaggaaccgtaatatgg 33368740
Score = 77.8 bits (39), Expect = 1e-011
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 74 aggctgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgactta 133
||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||| || | |
Sbjct: 33367513 aggctgctttggttgctttagctgctcatgcgtctgacctagctgaagctgaaagattga 33367572
Query: 134 ggttcttggcctctcctgctggaaagg 160
| || ||||| || |||||||||||||
Sbjct: 33367573 gatttttggcttcccctgctggaaagg 33367599
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaagg 76
||||| |||||||| |||||| |||||||||||||||| ||| | || |||||||
Sbjct: 33367365 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaagg 33367419
>gb|C28554.1|C28554 C28554 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61580_1A, mRNA sequence
Length = 297
Score = 113 bits (57), Expect = 3e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 22 accttgcggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgct 81
||||| |||||||| |||||| |||||||||||||||| ||| | || ||||||||||||
Sbjct: 174 accttacggactgcacttctaagatatgctgatctacttaattctccaaagaaggctgct 233
Query: 82 ttgcttgctttagcttctcatgcatctgatccagctgaagctgaa 126
||| ||||||||||| ||||||| ||||| | |||||||||||||
Sbjct: 234 ttggttgctttagctgctcatgcgtctgacctagctgaagctgaa 278
>gb|AQ861297.1|AQ861297 nbeb0016B13r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016B13r, DNA sequence
Length = 427
Score = 101 bits (51), Expect = 1e-018
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||| |||||||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 382 aggatgaatattctcaatgggtagtagctagccaaagaagccttcttgaagttatggctg 323
Query: 218 cattcccttcagctaagccaccactgggagt 248
||||||||||||||||||| |||||||||||
Sbjct: 322 cattcccttcagctaagcccccactgggagt 292
>gb|CA999107.1|CA999107 S234N_D11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 660
Score = 83.8 bits (42), Expect = 2e-013
Identities = 159/198 (80%)
Strand = Plus / Plus
Query: 372 aaggatccaccaaggagtttgttcaacatggatgaagaatacaattcctctggaatatag 431
||||||||| ||||||||||||| || ||||||||||| | ||||| ||||| | ||
Sbjct: 1 aaggatccataaaggagtttgttctacttggatgaagaactcgattcccttggaagagag 60
Query: 432 cgaagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctga 491
| ||||||| ||||||||||| || ||||| ||||||||||| ||||| | ||| ||||
Sbjct: 61 ccaagaatgtagctgggctccaatttttgttaggcagtcaaacttcaaactgcctactga 120
Query: 492 cccatccactccgattatcatgattggtcctgggacagggctggctccttttagaggctt 551
|| | || ||||| ||||| |||||||| || || || || |||||||| |||||
Sbjct: 121 tcctactgtgcctattataatgataggtcctggaactggtcttgcaccttttaggggctt 180
Query: 552 cttgcaggaaaggttagc 569
||| |||||||| |||||
Sbjct: 181 cttacaggaaagattagc 198
Score = 65.9 bits (33), Expect = 5e-008
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 398 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 457
Query: 829 gctagagatgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataac 888
|| |||||||||||| | || || || || || || || ||||| |||||||| |||
Sbjct: 458 gcaagagatgtacaccgcacactacacaccattgtgcaggaacagggttctttggacaac 517
Query: 889 tccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
|| || || || ||||||||||||||| |||||||||||||
Sbjct: 518 tcaaacacagaaagctatgtaaagagcttgcagatggaagg 558
>gb|CB000429.1|CB000429 S345Y_G07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 843
Score = 69.9 bits (35), Expect = 3e-009
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 383 aaggagtttgttcaacatggatgaagaatacaattcctctggaatatagcgaagaatgca 442
||||||||||||| || ||||||||||| ||||| ||||| | ||| ||||||| |
Sbjct: 14 aaggagtttgttctacttggatgaagaactttattcccttggaagagagccaagaatgta 73
Query: 443 gctgggctcccatatttgtgaggcagtcaaatttcaagttacctgctgacccatccactc 502
|||||||||| || ||||| ||||||||||| ||||| | ||| |||| || | |
Sbjct: 74 gctgggctccaatttttgttaggcagtcaaacttcaaactgcctactgatcctactgtgc 133
Query: 503 cgattatcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaaa 562
| ||||| ||||| |||||||| || || || || |||||||| |||||||| |||||||
Sbjct: 134 ctattataatgataggtcctggaactggtcttgcaccttttaggggcttcttacaggaaa 193
Query: 563 ggttagc 569
| |||||
Sbjct: 194 gattagc 200
Score = 65.9 bits (33), Expect = 5e-008
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 400 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 459
Query: 829 gctagagatgtacacaaaatgcttcatacaatagtccaagagcagggatctttggataac 888
|| |||||||||||| | || || || || || || || ||||| |||||||| |||
Sbjct: 460 gcaagagatgtacaccgcacactacacaccattgtgcaggaacagggttctttggacaac 519
Query: 889 tccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
|| || || || ||||||||||||||| |||||||||||||
Sbjct: 520 tcaaacacagaaagctatgtaaagagcttgcagatggaagg 560
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0070J06
Length = 142303
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 99842 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 99901
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 99902 cttggcctctcctgctggaaagg 99924
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 100018 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 100077
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 100078 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 100137
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 100138 agccgagatactactcaatttcatc 100162
>gb|AACV01017722.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017722, whole
genome shotgun sequence
Length = 17209
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 9057 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 9116
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 9117 cttggcctctcctgctggaaagg 9139
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 9233 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 9292
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 9293 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 9352
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 9353 agccgagatactactcaatttcatc 9377
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0437G01
Length = 147101
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 34612 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 34671
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 34672 cttggcctctcctgctggaaagg 34694
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 34788 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 34847
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 34848 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 34907
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 34908 agccgagatactactcaatttcatc 34932
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 8524389 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 8524448
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 8524449 cttggcctctcctgctggaaagg 8524471
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 8524565 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 8524624
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 8524625 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 8524684
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 8524685 agccgagatactactcaatttcatc 8524709
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 527253 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 527312
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 527313 cttggcctctcctgctggaaagg 527335
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 527429 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 527488
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 527489 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 527548
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 527549 agccgagatactactcaatttcatc 527573
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 8129259 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 8129318
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 8129319 cttggcctctcctgctggaaagg 8129341
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 8129435 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 8129494
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 8129495 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 8129554
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 8129555 agccgagatactactcaatttcatc 8129579
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 3e-009
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 78 tgctttgcttgctttagcttctcatgcatctgatccagctgaagctgaacgacttaggtt 137
||||||| |||| |||||| || |||| || ||| | |||||||||| || || |||||
Sbjct: 8756863 tgctttggttgcattagctacttatgcttcagattctactgaagctgatcgtctgaggtt 8756922
Query: 138 cttggcctctcctgctggaaagg 160
|||||||||||||||||||||||
Sbjct: 8756923 cttggcctctcctgctggaaagg 8756945
Score = 65.9 bits (33), Expect = 5e-008
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 158 aggatgagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctg 217
||||||||||| |||||||| | ||| ||||| || ||||| | ||||| ||||| |
Sbjct: 8757039 aggatgagtatgctcaatgggttgttgcgagtcaaagaagtctattagaagtgatggcag 8757098
Query: 218 cattcccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgc 277
||||||||||| ||||| ||||| ||||| || || ||||| | ||||||||||| |
Sbjct: 8757099 agttcccttcagcaaagcctccactaggagtcttctttgcagccgttgctcctcgtcttc 8757158
Query: 278 aaccacgatactactcaatttcatc 302
| || |||||||||||||||||||
Sbjct: 8757159 agccgagatactactcaatttcatc 8757183
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
OSJNBa0035B22, complete sequence
Length = 155788
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 119022 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 118963
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 118962 ggagtttgttctacttggatgaag 118939
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 116875 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 116817
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 118056 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 118011
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 119261 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 119202
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 119201 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 119142
Query: 283 cgatactactc 293
||||||||||
Sbjct: 119141 agatactactc 119131
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 117253 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 117194
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 117193 gcaagagatgtacac 117179
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 44303 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 44244
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 44243 ggagtttgttctacttggatgaag 44220
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 42156 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 42098
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 43337 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 43292
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 44542 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 44483
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 44482 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 44423
Query: 283 cgatactactc 293
||||||||||
Sbjct: 44422 agatactactc 44412
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 42534 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 42475
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 42474 gcaagagatgtacac 42460
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1065_E04
Length = 115865
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 44303 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 44244
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 44243 ggagtttgttctacttggatgaag 44220
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 42156 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 42098
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 43337 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 43292
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 44542 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 44483
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 44482 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 44423
Query: 283 cgatactactc 293
||||||||||
Sbjct: 44422 agatactactc 44412
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 42534 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 42475
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 42474 gcaagagatgtacac 42460
>gb|AACV01020537.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020537, whole
genome shotgun sequence
Length = 66024
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 63787 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 63846
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 63847 ggagtttgttctacttggatgaag 63870
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 65934 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 65992
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 64753 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 64798
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 65556 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 65615
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 65616 gcaagagatgtacac 65630
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 63548 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 63607
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 63608 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 63667
Query: 283 cgatactactc 293
||||||||||
Sbjct: 63668 agatactactc 63678
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 11377069 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 11377010
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 11377009 ggagtttgttctacttggatgaag 11376986
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 11374922 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 11374864
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 11376103 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 11376058
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 11377308 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 11377249
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 11377248 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 11377189
Query: 283 cgatactactc 293
||||||||||
Sbjct: 11377188 agatactactc 11377178
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 11375300 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 11375241
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 11375240 gcaagagatgtacac 11375226
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 20850880 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 20850821
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 20850820 ggagtttgttctacttggatgaag 20850797
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 20848733 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 20848675
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 20849914 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 20849869
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 20851119 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 20851060
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 20851059 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 20851000
Query: 283 cgatactactc 293
||||||||||
Sbjct: 20850999 agatactactc 20850989
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 20849111 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 20849052
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 20849051 gcaagagatgtacac 20849037
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 63.9 bits (32), Expect = 2e-007
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 325 agaattcatgtaacatgtgcattagtttatgggccttcaccaacaggaaggatccaccaa 384
|||||||||||||||||||| |||| ||||||| | || || ||||||||||| ||
Sbjct: 21913588 agaattcatgtaacatgtgcgctagtgtatgggcaaacccctactggaaggatccataaa 21913529
Query: 385 ggagtttgttcaacatggatgaag 408
||||||||||| || |||||||||
Sbjct: 21913528 ggagtttgttctacttggatgaag 21913505
Score = 61.9 bits (31), Expect = 8e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 871 cagggatctttggataactccaaaaccgagagctatgtaaagagcctgcagatggaagg 929
||||| |||||||| ||||| || || || ||||||||||||||| |||||||||||||
Sbjct: 21911441 cagggttctttggacaactcaaacacagaaagctatgtaaagagcttgcagatggaagg 21911383
Score = 52.0 bits (26), Expect = 8e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 434 aagaatgcagctgggctcccatatttgtgaggcagtcaaatttcaa 479
||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct: 21912622 aagaatgtagctgggctccaatttttgttaggcagtcaaacttcaa 21912577
Score = 46.1 bits (23), Expect = 0.049
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 163 gagtattctcaatggataactgctagtcagaggagtcttcttgaagttatggctgcattc 222
|||||||||||||||||| | | ||||| ||||||| | ||||||||| | | |||
Sbjct: 21913827 gagtattctcaatggatagtttcaagtcaacggagtctcttggaagttatgacagagttc 21913768
Query: 223 ccttcagctaagccaccactgggagtgtttttcgcagcaatagctcctcgtctgcaacca 282
|| ||||| ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct: 21913767 ccatcagcaaagcctccacttggtgtcttctttgcagccattgctcctcgactgcagccg 21913708
Query: 283 cgatactactc 293
||||||||||
Sbjct: 21913707 agatactactc 21913697
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 21911819 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 21911760
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 21911759 gcaagagatgtacac 21911745
>gb|AU068539.1|AU068539 AU068539 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30427_1A, mRNA sequence
Length = 190
Score = 56.0 bits (28), Expect = 5e-005
Identities = 79/99 (79%)
Strand = Plus / Plus
Query: 28 cggactgcgcttctacgatatgctgatctactcaatccaccgaagaaggctgctttgctt 87
|||||||| ||| | |||||| ||||||||| ||| | || ||||||| || ||| ||
Sbjct: 24 cggactgcacttnnaagatatgntgatctacttaattctccaaagaaggntgnnttggtt 83
Query: 88 gctttagcttctcatgcatctgatccagctgaagctgaa 126
||||||| |||||| ||||| | |||||||||||||
Sbjct: 84 nntttagctgntcatgcgtctgacctagctgaagctgaa 122
>gb|CA754289.1|CA754289 BR040013000_PLATE_G07_55_055.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040013000_PLATE_G07_55_055.ab1 similar to (AF302498)
NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus,
mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.012
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 614 ttggatgcaggaaccgtaatatggactacatatatgaagatgagttgcaaactttccttg 673
|||||||||| ||| | || ||||||| ||| ||||| |||||| || | ||||||||||
Sbjct: 622 ttggatgcagaaacagcaagatggacttcatctatgaggatgagctgaacactttccttg 563
Query: 674 agga 677
||||
Sbjct: 562 agga 559
Score = 44.1 bits (22), Expect = 0.19
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 790 ggtggttacttatatgtttgcggtgatgccaagggaatggctagagatgtaca 842
||||||||| | || || || ||||||||||| || ||||| |||||||||||
Sbjct: 446 ggtggttacatntacgtctgtggtgatgccaaaggcatggccagagatgtaca 394
>dbj|AG211221.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF3741_0_103_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF3741, genomic survey sequence
Length = 519
Score = 46.1 bits (23), Expect = 0.049
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 769 atttggaacatcatctcaaatggtggttacttatatgtttgcggtgatgccaagggaatg 828
||||||| |||||| || | |||||||| | ||||| || |||||||| ||||| |||
Sbjct: 301 atttggagcatcatttctcagggtggttatatttatgtctgtggtgatgcaaagggcatg 360
Query: 829 gctagagatgtacac 843
|| ||||||||||||
Sbjct: 361 gcaagagatgtacac 375
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,005,771
Number of Sequences: 438736
Number of extensions: 2005771
Number of successful extensions: 10123
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9736
Number of HSP's gapped (non-prelim): 348
length of query: 1340
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1319
effective length of database: 2,791,206,460
effective search space: 3681601320740
effective search space used: 3681601320740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)