BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (j... 446 e-123
dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA... 446 e-123
dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA... 446 e-123
ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA 446 e-123
ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-... 446 e-123
dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chro... 361 4e-097
dbj|AP005630.3| Oryza sativa (japonica cultivar-group) geno... 361 4e-097
gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) c... 361 4e-097
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 361 4e-097
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 361 4e-097
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 361 4e-097
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 361 4e-097
gb|C73265.1|C73265 C73265 Rice panicle at flowering stage O... 351 3e-094
gb|AU161988.1|AU161988 AU161988 Rice callus Oryza sativa (j... 256 2e-065
gb|C96916.1|C96916 C96916 Rice callus Oryza sativa (japonic... 62 5e-007
gb|AU108626.1|AU108626 AU108626 Rice callus Oryza sativa (j... 62 5e-007
gb|CF306744.1|CF306744 HDA1--04-L18.g1 OsHDAC1-overexpressi... 62 5e-007
gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda ph... 62 5e-007
gb|CV731237.1|CV731237 FLO--05-C22.g1 Rice flower lambda ph... 62 5e-007
dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
dbj|AP005314.2| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
dbj|AP005567.3| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 62 5e-007
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|CB678468.1|CB678468 OSJNEe16I08.r OSJNEe Oryza sativa (j... 54 1e-004
gb|CF328111.1|CF328111 NACL--02-N19.b1 Rice callus plasmid ... 46 0.027
gb|CF328112.1|CF328112 NACL--02-N19.g1 Rice callus plasmid ... 46 0.027
>gb|CB643031.1|CB643031 OSJNEb03I06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03I06 3', mRNA sequence
Length = 853
Score = 446 bits (225), Expect = e-123
Identities = 342/381 (89%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 747 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 688
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
| || |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 687 aaaagagtactgagcaatatcattactggcagagtcagaatgagaacaggacattatgga 628
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct: 627 agctaggaacgttgcctcctggtttgatcacattctactccaccacaaagcctctggaaa 568
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 567 aatcttggcatgttcttggactcgggtacaatccaagcataagcatggaggagattagaa 508
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 507 acgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatcggtatgaacc 448
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||| |||||||| || ||||| || || ||||||| ||||| |||||||
Sbjct: 447 agttcaggcacctatggacaaaatacgtggattacgacgactcattcattcgccaatgca 388
Query: 361 attttgcaccgccatagaagg 381
|||||||||| || |||||||
Sbjct: 387 attttgcaccaccgtagaagg 367
>dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023H24, full
insert sequence
Length = 2047
Score = 446 bits (225), Expect = e-123
Identities = 342/381 (89%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 1317 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 1376
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
| || |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1377 aaaagagtactgagcaatatcattactggcagagtcagaatgagaacaggacattatgga 1436
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct: 1437 agctaggaacgttgcctcctggtttgatcacattctactccaccacaaagcctctggaaa 1496
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 1497 aatcttggcatgttcttggactcgggtacaatccaagcataagcatggaggagattagaa 1556
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1557 acgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatcggtatgaacc 1616
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||| |||||||| || ||||| || || ||||||| ||||| |||||||
Sbjct: 1617 agttcaggcacctatggacaaaatacgtggattacgacgactcattcattcgccaatgca 1676
Query: 361 attttgcaccgccatagaagg 381
|||||||||| || |||||||
Sbjct: 1677 attttgcaccaccgtagaagg 1697
>dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K22, full
insert sequence
Length = 2023
Score = 446 bits (225), Expect = e-123
Identities = 342/381 (89%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 1295 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 1354
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
| || |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1355 aaaagagtactgagcaatatcattactggcagagtcagaatgagaacaggacattatgga 1414
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct: 1415 agctaggaacgttgcctcctggtttgatcacattctactccaccacaaagcctctggaaa 1474
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 1475 aatcttggcatgttcttggactcgggtacaatccaagcataagcatggaggagattagaa 1534
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1535 acgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatcggtatgaacc 1594
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||| |||||||| || ||||| || || ||||||| ||||| |||||||
Sbjct: 1595 agttcaggcacctatggacaaaatacgtggattacgacgactcattcattcgccaatgca 1654
Query: 361 attttgcaccgccatagaagg 381
|||||||||| || |||||||
Sbjct: 1655 attttgcaccaccgtagaagg 1675
>ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2022
Score = 446 bits (225), Expect = e-123
Identities = 342/381 (89%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 1294 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 1353
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
| || |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1354 aaaagagtactgagcaatatcattactggcagagtcagaatgagaacaggacattatgga 1413
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct: 1414 agctaggaacgttgcctcctggtttgatcacattctactccaccacaaagcctctggaaa 1473
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 1474 aatcttggcatgttcttggactcgggtacaatccaagcataagcatggaggagattagaa 1533
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1534 acgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatcggtatgaacc 1593
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||| |||||||| || ||||| || || ||||||| ||||| |||||||
Sbjct: 1594 agttcaggcacctatggacaaaatacgtggattacgacgactcattcattcgccaatgca 1653
Query: 361 attttgcaccgccatagaagg 381
|||||||||| || |||||||
Sbjct: 1654 attttgcaccaccgtagaagg 1674
>ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0021C10.5
mRNA
Length = 2047
Score = 446 bits (225), Expect = e-123
Identities = 342/381 (89%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 1317 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 1376
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
| || |||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1377 aaaagagtactgagcaatatcattactggcagagtcagaatgagaacaggacattatgga 1436
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
||||||||||| |||| ||||| |||||||| |||||||| || ||||| |||||||| |
Sbjct: 1437 agctaggaacgttgcctcctggtttgatcacattctactccaccacaaagcctctggaaa 1496
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 1497 aatcttggcatgttcttggactcgggtacaatccaagcataagcatggaggagattagaa 1556
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1557 acgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatcggtatgaacc 1616
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
||||||||||||| |||||||| || ||||| || || ||||||| ||||| |||||||
Sbjct: 1617 agttcaggcacctatggacaaaatacgtggattacgacgactcattcattcgccaatgca 1676
Query: 361 attttgcaccgccatagaagg 381
|||||||||| || |||||||
Sbjct: 1677 attttgcaccaccgtagaagg 1697
>dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0416F07, ***
SEQUENCING IN PROGRESS ***
Length = 136073
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Plus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 38812 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 38871
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 38872 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 38931
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 38932 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 38991
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 38992 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 39051
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 39052 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 39097
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 38324 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 38383
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 38384 aaaagagtactgagcaatatcattactggcagagtcag 38421
>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0021C10
Length = 119527
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 15651 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 15592
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 15591 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 15532
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 15531 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 15472
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 15471 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 15412
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 15411 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 15366
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 16139 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 16080
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 16079 aaaagagtactgagcaatatcattactggcagagtcag 16042
>gb|AACV01004388.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004388, whole
genome shotgun sequence
Length = 12689
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 6599 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 6540
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 6539 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 6480
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6479 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 6420
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 6419 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 6360
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 6359 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 6314
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 7087 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 7028
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 7027 aaaagagtactgagcaatatcattactggcagagtcag 6990
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 3721824 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 3721765
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 3721764 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 3721705
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 3721704 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 3721645
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 3721644 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 3721585
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 3721584 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 3721539
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 3722312 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 3722253
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 3722252 aaaagagtactgagcaatatcattactggcagagtcag 3722215
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 3890149 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 3890090
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 3890089 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 3890030
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 3890029 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 3889970
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 3889969 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 3889910
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 3889909 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 3889864
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 3890637 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 3890578
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 3890577 aaaagagtactgagcaatatcattactggcagagtcag 3890540
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 17343213 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 17343154
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 17343153 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 17343094
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 17343093 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 17343034
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 17343033 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 17342974
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 17342973 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 17342928
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 17343701 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 17343642
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 17343641 aaaagagtactgagcaatatcattactggcagagtcag 17343604
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 361 bits (182), Expect = 4e-097
Identities = 260/286 (90%)
Strand = Plus / Minus
Query: 96 cagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcactttc 155
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct: 17659637 cagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttgatcacattc 17659578
Query: 156 tactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcct 215
||||| || ||||| |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 17659577 tactccaccacaaagcctctggaaaaatcttggcatgttcttggactcgggtacaatcca 17659518
Query: 216 agcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaag 275
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 17659517 agcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaag 17659458
Query: 276 ccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggactat 335
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 17659457 ccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggattac 17659398
Query: 336 gatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 17659397 gacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 17659352
Score = 91.7 bits (46), Expect = 5e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| |
Sbjct: 17660125 ctaatgcatgtggatgggcatatggcatgaacttctttgatcttgattcttggaggagag 17660066
Query: 61 agaaatgtactgagcagtaccattattggcagaatcag 98
| || |||||||||| || ||||| ||||||| ||||
Sbjct: 17660065 aaaagagtactgagcaatatcattactggcagagtcag 17660028
>gb|C73265.1|C73265 C73265 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3569_1A, mRNA sequence
Length = 419
Score = 351 bits (177), Expect = 3e-094
Identities = 259/287 (90%)
Strand = Plus / Plus
Query: 95 tcagaatgagaacaggacattatggaagctaggaacgctgccccctggcttgatcacttt 154
||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||| ||
Sbjct: 2 tcagaatgagaacaggacattatggaagctaggaacgttgcctcctggtttnatcacatt 61
Query: 155 ctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggatacaatcc 214
|||||| || ||||| |||||||| |||||||||||||| |||||||| || ||||||||
Sbjct: 62 ctactccaccacaaagcctctggaaaaatcttggcatgtncttggactcgggtacaatcc 121
Query: 215 tagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggcaacatgaa 274
||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 122 aagcataagcatggaggagattagaaacgctgctgttgtgcatttcaacgggaacatgaa 181
Query: 275 gccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatgtggacta 334
|||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 182 gccctggctggatatcggtatgaaccagttcaggcacctatggacaaaatacgtggatta 241
Query: 335 tgatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 242 cgacgactcattcattcgccaatgcaattttgcaccaccgtagaagg 288
>gb|AU161988.1|AU161988 AU161988 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C62219, mRNA sequence
Length = 574
Score = 256 bits (129), Expect = 2e-065
Identities = 190/211 (90%)
Strand = Plus / Plus
Query: 171 cctctggagaaatcttggcatgttcttggacttggatacaatcctagcatcagcatggag 230
|||||||| || |||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 6 cctctggaaaantcttggcatgttcttggactcgggtacaatccaagcataagcatggag 65
Query: 231 gagattagaaatgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatc 290
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 66 gagattagaancgctgctgttgtgcatttcaacgggaacatgaagccctggctggatatc 125
Query: 291 ggtatgaaccagttcaggcacctttggacaaagtatgtggactatgatgactcatatatt 350
||||||||||||||||||||||| |||||||| || ||||| || || ||||||| |||
Sbjct: 126 ggtatgaaccagttcaggcacctatggacaaaatacgtggattacgacgactcattcatt 185
Query: 351 cgtcaatgcaattttgcaccgccatagaagg 381
|| ||||||||||||||||| || |||||||
Sbjct: 186 cgccaatgcaattttgcaccaccgtagaagg 216
>gb|C96916.1|C96916 C96916 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50118_12Z, mRNA sequence
Length = 682
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 137 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 183
>gb|AU108626.1|AU108626 AU108626 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12757, mRNA sequence
Length = 717
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 290 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 336
>gb|CF306744.1|CF306744 HDA1--04-L18.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--04-L18, mRNA sequence
Length = 560
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 557 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 511
>gb|CV731236.1|CV731236 FLO--05-C22.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-C22,
mRNA sequence
Length = 500
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 280 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 326
>gb|CV731237.1|CV731237 FLO--05-C22.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-C22,
mRNA sequence
Length = 488
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 415 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 369
>dbj|AK073015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149G11, full
insert sequence
Length = 2482
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 2038 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 2084
>gb|AACV01020445.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020445, whole
genome shotgun sequence
Length = 25627
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 17706 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 17752
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0515E01
Length = 140063
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 27437 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 27391
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1254_E07
Length = 124028
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 79426 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 79380
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 455279 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 455233
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 10044065 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 10044019
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 19517876 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 19517830
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 61.9 bits (31), Expect = 5e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct: 20561779 aatgctgctgttgttcattacaacggtaacatgaagccatggctgga 20561733
>gb|CB678468.1|CB678468 OSJNEe16I08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16I08 3', mRNA sequence
Length = 475
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
|||||||||||||| |||| |||||| ||||||||||| |||||||
Sbjct: 399 aatgctgctgttgttcattacaacggtaacatgaagccacggctgga 353
>gb|CF328111.1|CF328111 NACL--02-N19.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-N19, mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.027
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 339 gactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 6 gactcattcattcgccaatgcaattttgcaccaccgtagaagg 48
>gb|CF328112.1|CF328112 NACL--02-N19.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--02-N19, mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.027
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 339 gactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
||||||| ||||| ||||||||||||||||| || |||||||
Sbjct: 369 gactcattcattcgccaatgcaattttgcaccaccgtagaagg 327
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,041,389
Number of Sequences: 438736
Number of extensions: 1041389
Number of successful extensions: 5015
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 100
length of query: 746
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 725
effective length of database: 2,791,206,460
effective search space: 2023624683500
effective search space used: 2023624683500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)