BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192593.2.1
(800 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH... 519 e-145
dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA... 519 e-145
dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA... 519 e-145
ref|NM_192582.1| Oryza sativa (japonica cultivar-group), p... 519 e-145
dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA... 511 e-142
gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sati... 458 e-126
gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sati... 416 e-114
gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering s... 394 e-107
gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (jap... 341 4e-091
gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (jap... 311 3e-082
dbj|AP003048.2| Oryza sativa (japonica cultivar-group) geno... 252 3e-064
gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) c... 252 3e-064
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 252 3e-064
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 252 3e-064
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 252 3e-064
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 252 3e-064
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 252 3e-064
dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA... 170 7e-040
ref|NM_192584.1| Oryza sativa (japonica cultivar-group), p... 170 7e-040
gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (jap... 159 3e-036
gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA ... 159 3e-036
gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (jap... 155 4e-035
gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing ... 153 2e-034
gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (jap... 129 3e-027
gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japoni... 98 9e-018
dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chro... 60 2e-006
dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
dbj|AP003617.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA l... 58 8e-006
dbj|AK107309.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AU031992.1|AU031992 AU031992 Rice root Oryza sativa (jap... 52 5e-004
dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.029
gb|CV723586.1|CV723586 root--04-B06.g1 Rice root lambda pha... 46 0.029
gb|AU068084.1|AU068084 AU068084 Rice callus Oryza sativa (j... 44 0.11
gb|AU068112.1|AU068112 AU068112 Rice callus Oryza sativa (j... 44 0.11
gb|AU092286.1|AU092286 AU092286 Rice callus Oryza sativa (j... 44 0.11
gb|AU094406.1|AU094406 AU094406 Rice panicle at ripening st... 44 0.11
gb|AU108608.1|AU108608 AU108608 Rice callus Oryza sativa (j... 44 0.11
gb|CB642445.1|CB642445 OSJNEb02K04.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB643863.1|CB643863 OSJNEb04M17.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB644637.1|CB644637 OSJNEb05P02.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB644745.1|CB644745 OSJNEb06B13.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB644909.1|CB644909 OSJNEb06F05.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB646552.1|CB646552 OSJNEb09B16.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB647572.1|CB647572 OSJNEb10I22.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB651207.1|CB651207 OSJNEb16B09.r OSJNEb Oryza sativa (j... 44 0.11
gb|CB654054.1|CB654054 OSJNEc05K13.f OSJNEc Oryza sativa (j... 44 0.11
gb|CB654326.1|CB654326 OSJNEc06H18.f OSJNEc Oryza sativa (j... 44 0.11
gb|CB673946.1|CB673946 OSJNEe08L23.r OSJNEe Oryza sativa (j... 44 0.11
gb|CB674376.1|CB674376 OSJNEe09G07.r OSJNEe Oryza sativa (j... 44 0.11
gb|CB674606.1|CB674606 OSJNEe09L17.r OSJNEe Oryza sativa (j... 44 0.11
gb|CB677946.1|CB677946 OSJNEe15G17.r OSJNEe Oryza sativa (j... 44 0.11
gb|CF323160.1|CF323160 HDN--03-B10.g1 OsHDAC1-overexpressin... 44 0.11
dbj|AB030939.1| Oryza sativa (japonica cultivar-group) mRNA... 44 0.11
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 44 0.11
dbj|AK119320.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK121610.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AP004888.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01005336.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|XM_467607.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_467608.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP005685.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|AACV01019727.1| Oryza sativa (japonica cultivar-group) c... 42 0.45
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 42 0.45
dbj|AP005552.3| Oryza sativa (japonica cultivar-group) geno... 42 0.45
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.45
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.45
>dbj|AB037421.1| Oryza sativa (japonica cultivar-group) ALDH1a mRNA for cytosolic
aldehyde dehydrogenase, complete cds
Length = 1751
Score = 519 bits (262), Expect = e-145
Identities = 504/584 (86%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 987 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 1046
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 1047 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 1106
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 1107 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 1166
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1167 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 1223
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 1224 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatcttcgggccggtgatggcc 1283
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 1284 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggc 1343
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
||||| |||||||| || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1344 ctggctgccggcatagtcaccaagaacatcgacgtcgcgaacacggtttcgcggtcgatc 1403
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 1404 cgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcggg 1463
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 1464 gggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacctc 1523
Query: 558 cagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 1524 cacaccaaggcggtggtcacccctctctacaacaccccttggct 1567
>dbj|AK119571.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A10, full
insert sequence
Length = 1854
Score = 519 bits (262), Expect = e-145
Identities = 504/584 (86%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 1041 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 1100
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 1101 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 1160
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 1161 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 1220
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1221 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 1277
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 1278 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatcttcgggccggtgatggcc 1337
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 1338 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggc 1397
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
||||| |||||||| || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1398 ctggctgccggcatagtcaccaagaacatcgacgtcgcgaacacggtttcgcggtcgatc 1457
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 1458 cgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcggg 1517
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 1518 gggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacctc 1577
Query: 558 cagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 1578 cacaccaaggcggtggtcacccctctctacaacaccccttggct 1621
>dbj|AK121462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144F17, full
insert sequence
Length = 1732
Score = 519 bits (262), Expect = e-145
Identities = 504/584 (86%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 999 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 1058
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 1059 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 1118
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 1119 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 1178
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1179 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 1235
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 1236 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatcttcgggccggtgatggcc 1295
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 1296 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggc 1355
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
||||| |||||||| || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1356 ctggctgccggcatagtcaccaagaacatcgacgtcgcgaacacggtttcgcggtcgatc 1415
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 1416 cgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcggg 1475
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 1476 gggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacctc 1535
Query: 558 cagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 1536 cacaccaaggcggtggtcacccctctctacaacaccccttggct 1579
>ref|NM_192582.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1509
Score = 519 bits (262), Expect = e-145
Identities = 504/584 (86%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 925 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 984
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 985 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 1044
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 1045 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 1104
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1105 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 1161
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 1162 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatcttcgggccggtgatggcc 1221
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 1222 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggc 1281
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
||||| |||||||| || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1282 ctggctgccggcatagtcaccaagaacatcgacgtcgcgaacacggtttcgcggtcgatc 1341
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 1342 cgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcggg 1401
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 1402 gggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacctc 1461
Query: 558 cagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 1462 cacaccaaggcggtggtcacccctctctacaacaccccttggct 1505
>dbj|AK105638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E03, full
insert sequence
Length = 1729
Score = 511 bits (258), Expect = e-142
Identities = 503/584 (86%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 996 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 1055
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 1056 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 1115
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 1116 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 1175
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1176 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 1232
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||| ||| ||||||||||||||
Sbjct: 1233 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaaccttcgggccggtgatggcc 1292
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 1293 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggc 1352
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
||||| |||||||| || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 1353 ctggctgccggcatagtcaccaagaacatcgacgtcgcgaacacggtttcgcggtcgatc 1412
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 1413 cgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcggg 1472
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 1473 gggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacctc 1532
Query: 558 cagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 1533 cacaccaaggcggtggtcacccctctctacaacaccccttggct 1576
>gb|AU075854.1|AU075854 AU075854 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_2Z, mRNA sequence
Length = 712
Score = 458 bits (231), Expect = e-126
Identities = 420/481 (87%), Gaps = 4/481 (0%)
Strand = Plus / Plus
Query: 121 gcccccaggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagc 180
|||| ||| |||||||||| || ||||||||| |||||| |||||| |||||||| ||||
Sbjct: 64 gccctcagattgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagc 123
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
|||||||||| ||| ||||||||||||||||||| |||||||| || || |||||||
Sbjct: 124 gcgaaggcgcgacgttggtcaccggagggaagcc-tgcggcgaaaac---gggtactaca 179
Query: 241 tcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatct 300
||||||||||||||||||||||||||||||| || ||| ||||||| || || |||||||
Sbjct: 180 tcgagcccaccatcttcacggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatct 239
Query: 301 ttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcga 360
| |||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||||
Sbjct: 240 tcgggccggtgatggccctcatgaaattcaagacggttgaggaggcgatccagaaggcga 299
Query: 361 acaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaaca 420
||| |||||||||||||||||| |||||||| || |||||||||||||||||||| ||||
Sbjct: 300 acagcacccggtacggcctggctgccggcatagtcaccaagaacatcgacgtcgcgaaca 359
Query: 421 ccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacc 480
| || |||||||| ||||| || || || ||||||||||| |||||| ||| |||||||
Sbjct: 360 cggtttcgcggtcgatccgggcaggggcaatctggatcaattgctacctcggcttcgacc 419
Query: 481 cggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacg 540
| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 420 ccgacgtgccgttcggggggtacaagatgagcggcttcggcaaggacatgggcatggacg 479
Query: 541 cgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggc 600
| || || |||||||| || |||||| | |||||||| || || |||||||| || ||||
Sbjct: 480 cccttgagaagtacctccacaccaaggcggtggtcacccctctctacaacaccccttggc 539
Query: 601 t 601
|
Sbjct: 540 t 540
>gb|AU075853.1|AU075853 AU075853 Rice mature leaf Oryza sativa (japonica cultivar-group)
cDNA clone S20436_1A, mRNA sequence
Length = 507
Score = 416 bits (210), Expect = e-114
Identities = 417/480 (86%), Gaps = 7/480 (1%)
Strand = Plus / Plus
Query: 117 caaggcccccaggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcgga 176
|||||||| ||| |||||||||| || ||||||||| |||||| |||||| ||||||||
Sbjct: 24 caaggccctcagattgacaaggagcaatacgagaagatcctcaagtacatcgacatcggt 83
Query: 177 aagcgcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctac 236
||||||||||||| || |||||||||||||||||||||||||||| || || |||
Sbjct: 84 aagcgcgaaggcggagcgttggtcaccggagggaagccctgcggcgaaaac---gggtac 140
Query: 237 tacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaa 296
||||||||||||||||||||||||||||||||||| || ||| ||||||| || || |||
Sbjct: 141 tacatcgagcccaccatcttcacggacgtcaaggaagaaatgtcgatcgcgcaagaggaa 200
Query: 297 atctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaa 356
||||| |||||||||||||| ||||||||||||||||| || ||||||| |||||||||
Sbjct: 201 atcttcgggccggtgatggccctcatgaaattcaagacggttgaggaggcgatccagaag 260
Query: 357 gcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgcc 416
||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 261 gcgaacagcacccggtacggcctggctgccggcatagtcaccaagaacatcgacgtcgcg 320
Query: 417 aacaccgtgtcgcggtccatcc-gcgccggcgccatctgga-tcaactgctacttcgcg- 473
||||| || |||||||| |||| | || || || ||||||| |||| |||||| ||| |
Sbjct: 321 aacacggtttcgcggtcgatccggggcaggggcaatctggattcaattgctacctcgggc 380
Query: 474 ttcgacccggacgcgccgttcggcgggtacaagatgagcgg-gttcggcaaggacatggg 532
|||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttcgaccccgacgtgccgttcggggggtacaagatgagcggctttcggcaaggacatggg 440
Query: 533 catggacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
||||||||| || || |||||||| || |||||| | |||||||| || || ||||||||
Sbjct: 441 catggacgcccttgagaagtacctccacaccaaggcggtggtcacccctctctacaacac 500
>gb|AU183608.1|AU183608 AU183608 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1762, mRNA sequence
Length = 589
Score = 394 bits (199), Expect = e-107
Identities = 366/420 (87%), Gaps = 4/420 (0%)
Strand = Plus / Plus
Query: 182 cgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacat 241
||||| ||| ||| ||||||||||||||||||| |||||||| || || ||||||||
Sbjct: 6 cgaagncgcgacgttggtcaccggagggaagcc-tgcggcgaaaac---gggtactacat 61
Query: 242 cgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctt 301
|||||||||||||||||||||||||||||| || ||| ||||||| || || ||||||||
Sbjct: 62 cgagcccaccatcttcacggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatctt 121
Query: 302 tgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaa 361
|||||||||||||| ||||||||||||||||| || ||||||| ||||||||| |||||
Sbjct: 122 cgggccggtgatggccctcatgaaattcaagacggttgaggaggcgatccagaaggcgaa 181
Query: 362 caacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacac 421
|| |||||||||||||||||| |||||||| || |||||||||||||||||||| |||||
Sbjct: 182 cagcacccggtacggcctggctgccggcatagtcaccaagaacatcgacgtcgcgaacac 241
Query: 422 cgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgaccc 481
|| |||||||| ||||| || || || ||||||||||| |||||| ||| ||||||||
Sbjct: 242 ggtttcgcggtcgatccgggcaggggcaatctggatcaattgctacctcggcttcgaccc 301
Query: 482 ggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgc 541
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 302 cgacgtgccgttcggggggtacaagatgagcggcttcggcaaggacatgggcatggacgc 361
Query: 542 gctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| || |||||||| || |||||| | |||||||| || || |||||||| || |||||
Sbjct: 362 ccttgagaagtacctccacaccaaggcggtggtcacccctctctacaacaccccttggct 421
>gb|AU162412.1|AU162412 AU162412 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1467, mRNA sequence
Length = 584
Score = 341 bits (172), Expect = 4e-091
Identities = 351/405 (86%), Gaps = 6/405 (1%)
Strand = Plus / Plus
Query: 200 caccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcac 259
|||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct: 15 caccggagggaaaccctgcggcga--anacggg-tactacatcgagcccaccatcttcac 71
Query: 260 ggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggcc-ggtgatggctc 318
|||||||||||| || || ||||||| || || |||||||| ||||| ||||||||| |
Sbjct: 72 ggacgtcaaggaagaaatntcgatcgcgcaagaggaaatcttcgggcccggtgatggccc 131
Query: 319 tcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcc 378
|||||||||||||||| || ||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 132 tcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacggcc 191
Query: 379 tggccgccggcatcgtgaccaagaacatcgacgtc-gccaacaccgtgtcgcggtccatc 437
|||| |||||||| || |||||||||||||||||| || ||||| || |||||||| |||
Sbjct: 192 tggctgccggcatagtcaccaagaacatcgacgtccgcgaacacggtttcgcggtcgatc 251
Query: 438 c-gcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcgg 496
| | || || || ||||||||||| |||||| ||| |||||||| |||| |||||||||
Sbjct: 252 ccgggcaggggcaatctggatcaattgctacctcggcttcgaccccgacgtgccgttcgg 311
Query: 497 cgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacct 556
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct: 312 ggggtacaagatgagcggcttcggcaaggacatgggcatggacgcccttgagaagtacct 371
Query: 557 gcagaccaagaccgtggtcactccgctgtacaacactccatggct 601
|| |||||| | |||||||| || || |||||||| || |||||
Sbjct: 372 ccacaccaaggcggtggtcacccctctctacaacaccccttggct 416
>gb|AU070173.1|AU070173 AU070173 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0506_11A, mRNA sequence
Length = 500
Score = 311 bits (157), Expect = 3e-082
Identities = 310/359 (86%), Gaps = 4/359 (1%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 143 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 202
Query: 78 aagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaag 137
|| || ||||||||||| |||||||||||| | || |||||||| ||| ||||||||
Sbjct: 203 aaatcggtggtcggagatccgttcaacccgcgagttcatcaaggccctcagattgacaag 262
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
|| || ||||||||| |||||| |||||| |||||||| |||||||||||||| ||| ||
Sbjct: 263 gagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcgcgacgttg 322
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 323 gtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagcccaccatcttc 379
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
|||||||||||||| || ||| ||||||| || || |||||||| ||||||||||||||
Sbjct: 380 acggacgtcaaggaagaaatgtcgatcgcgcaagaggaaatcttcgggccggtgatggc- 438
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacgg 376
||||||||||||||||| || ||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 439 ctcatgaaattcaagacggttgaggaggcgatccagaaggcgaacagcacccggtacgg 497
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0710A02
Length = 157201
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 34076 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 34135
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 34136 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 34195
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 34196 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 34255
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 34256 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 34315
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 34316 cctctctacaacaccccttggct 34338
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 33649 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 33708
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 33709 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 33765
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 33766 ccatcttcacggacgtcaagg 33786
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 47466 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 47525
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 47526 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 47585
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 47586 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 47645
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 47646 gtacctgcaggtcaagaccgt 47666
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 33416 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 33475
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 33476 aaatcggtggtcggagatccgttcaacccg 33505
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 33920 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 33972
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 46779 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 46838
Query: 63 g 63
|
Sbjct: 46839 g 46839
>gb|AACV01001715.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001715, whole
genome shotgun sequence
Length = 24589
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 6097 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 6156
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 6157 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 6216
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 6217 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 6276
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 6277 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 6336
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 6337 cctctctacaacaccccttggct 6359
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 5670 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 5729
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 5730 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 5786
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 5787 ccatcttcacggacgtcaagg 5807
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 19463 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 19522
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 19523 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 19582
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 19583 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 19642
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 19643 gtacctgcaggtcaagaccgt 19663
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 5437 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 5496
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 5497 aaatcggtggtcggagatccgttcaacccg 5526
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 5941 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 5993
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 18776 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 18835
Query: 63 g 63
|
Sbjct: 18836 g 18836
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 23180634 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 23180693
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 23180694 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 23180753
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 23180754 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 23180813
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 23180814 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 23180873
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 23180874 cctctctacaacaccccttggct 23180896
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 23180207 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 23180266
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 23180267 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 23180323
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 23180324 ccatcttcacggacgtcaagg 23180344
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 23194024 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 23194083
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 23194084 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 23194143
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 23194144 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 23194203
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 23194204 gtacctgcaggtcaagaccgt 23194224
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 23179974 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 23180033
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 23180034 aaatcggtggtcggagatccgttcaacccg 23180063
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 23180478 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 23180530
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 23193337 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 23193396
Query: 63 g 63
|
Sbjct: 23193397 g 23193397
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 6098866 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 6098925
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 6098926 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 6098985
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 6098986 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 6099045
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 6099046 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 6099105
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 6099106 cctctctacaacaccccttggct 6099128
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 6098439 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 6098498
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 6098499 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 6098555
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 6098556 ccatcttcacggacgtcaagg 6098576
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 6112256 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 6112315
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 6112316 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 6112375
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 6112376 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 6112435
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 6112436 gtacctgcaggtcaagaccgt 6112456
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 6098206 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 6098265
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 6098266 aaatcggtggtcggagatccgttcaacccg 6098295
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 6098710 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 6098762
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 6111569 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 6111628
Query: 63 g 63
|
Sbjct: 6111629 g 6111629
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 6026244 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 6026303
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 6026304 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 6026363
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 6026364 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 6026423
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 6026424 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 6026483
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 6026484 cctctctacaacaccccttggct 6026506
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 6025817 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 6025876
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 6025877 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 6025933
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 6025934 ccatcttcacggacgtcaagg 6025954
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 6039610 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 6039669
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 6039670 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 6039729
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 6039730 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 6039789
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 6039790 gtacctgcaggtcaagaccgt 6039810
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 6025584 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 6025643
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 6025644 aaatcggtggtcggagatccgttcaacccg 6025673
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 6026088 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 6026140
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 6038923 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 6038982
Query: 63 g 63
|
Sbjct: 6038983 g 6038983
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 22651367 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 22651426
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 22651427 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 22651486
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 22651487 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 22651546
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 22651547 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 22651606
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 22651607 cctctctacaacaccccttggct 22651629
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 22650940 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 22650999
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 22651000 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 22651056
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 22651057 ccatcttcacggacgtcaagg 22651077
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 22664733 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 22664792
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 22664793 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 22664852
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 22664853 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 22664912
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 22664913 gtacctgcaggtcaagaccgt 22664933
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 22650707 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 22650766
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 22650767 aaatcggtggtcggagatccgttcaacccg 22650796
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 22651211 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 22651263
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 22664046 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 22664105
Query: 63 g 63
|
Sbjct: 22664106 g 22664106
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 252 bits (127), Expect = 3e-064
Identities = 229/263 (87%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||| ||||||||| ||||||| |||||||||||||||||| |||||||| || |||
Sbjct: 23101917 gaggaggcgatccagaaggcgaacagcacccggtacggcctggctgccggcatagtcacc 23101976
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
||||||||||||||||| ||||| || |||||||| ||||| || || || |||||||||
Sbjct: 23101977 aagaacatcgacgtcgcgaacacggtttcgcggtcgatccgggcaggggcaatctggatc 23102036
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|| |||||| ||| |||||||| |||| ||||||||| ||||||||||||||||| |||
Sbjct: 23102037 aattgctacctcggcttcgaccccgacgtgccgttcggggggtacaagatgagcggcttc 23102096
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||||| || |||||| | ||||||||
Sbjct: 23102097 ggcaaggacatgggcatggacgcccttgagaagtacctccacaccaaggcggtggtcacc 23102156
Query: 579 ccgctgtacaacactccatggct 601
|| || |||||||| || |||||
Sbjct: 23102157 cctctctacaacaccccttggct 23102179
Score = 165 bits (83), Expect = 5e-038
Identities = 127/141 (90%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 130 ttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcg 189
|||||||||| || ||||||||| |||||| |||||| |||||||| |||||||||||||
Sbjct: 23101490 ttgacaaggagcaatacgagaagatcctcaagtacatcgacatcggtaagcgcgaaggcg 23101549
Query: 190 ccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagccca 249
| ||| |||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 23101550 cgacgttggtcaccggagggaagccctgcggcgaaaac---gggtactacatcgagccca 23101606
Query: 250 ccatcttcacggacgtcaagg 270
|||||||||||||||||||||
Sbjct: 23101607 ccatcttcacggacgtcaagg 23101627
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 23115307 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 23115366
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 23115367 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 23115426
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 23115427 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 23115486
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 23115487 gtacctgcaggtcaagaccgt 23115507
Score = 67.9 bits (34), Expect = 8e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 18 atctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagc 77
||||| || ||||| ||||||||||| | ||||||||||||||| ||||| | ||||
Sbjct: 23101257 atctatgtccaggaggggatctacgatgcgttcgtgaagaaggcgaccgagatggccaag 23101316
Query: 78 aagtccgtggtcggagacccgttcaacccg 107
|| || ||||||||||| ||||||||||||
Sbjct: 23101317 aaatcggtggtcggagatccgttcaacccg 23101346
Score = 65.9 bits (33), Expect = 3e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 280 cgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaag 332
||||||| || || |||||||| |||||||||||||| |||||||||||||||
Sbjct: 23101761 cgatcgcgcaagaggaaatcttcgggccggtgatggccctcatgaaattcaag 23101813
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 23114620 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 23114679
Query: 63 g 63
|
Sbjct: 23114680 g 23114680
>dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038G01, full
insert sequence
Length = 1961
Score = 170 bits (86), Expect = 7e-040
Identities = 275/338 (81%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || ||| |||||||| || |||||||| || || ||
Sbjct: 1316 tactacattgagcctaccatatttgtggatgtcaaggaggaaatgacgattgcgcaagag 1375
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
|| ||||| || ||||||||| | |||||||| |||||||| |||||||||| ||| ||
Sbjct: 1376 gagatcttcggcccggtgatgtccctcatgaagttcaagacggtggaggaggcgatagag 1435
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|| || ||| |||| |||||| ||||| |||||||| |||||||||||| || || |
Sbjct: 1436 aaggccaactgcaccaagtacgggctggctgccggcattgtgaccaagaacctcaacatt 1495
Query: 414 gccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcg 473
||||||| |||||| |||| | || |||||| | | ||| | ||||||||||||||
Sbjct: 1496 gccaacatggtgtcgaggtcagtgcgggccggcacggtgtgggtgaactgctacttcgcc 1555
Query: 474 ttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggc 533
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 1556 ttcgaccccgacgcgccgttcggcgggtacaagatgagcgggttcggccgggaccaaggg 1615
Query: 534 atggacgcgctcgacaagtacctgcagaccaagaccgt 571
|||| ||| | ||||||||||||||| |||||||||
Sbjct: 1616 atggtcgccatggacaagtacctgcaggtcaagaccgt 1653
Score = 50.1 bits (25), Expect = 0.002
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| |||| |||||||
Sbjct: 1088 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaggaaggcc 1147
Query: 63 g 63
|
Sbjct: 1148 g 1148
>ref|NM_192584.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1524
Score = 170 bits (86), Expect = 7e-040
Identities = 275/338 (81%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || ||| |||||||| || |||||||| || || ||
Sbjct: 1153 tactacattgagcctaccatatttgtggatgtcaaggaggaaatgacgattgcgcaagag 1212
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
|| ||||| || ||||||||| | |||||||| |||||||| |||||||||| ||| ||
Sbjct: 1213 gagatcttcggcccggtgatgtccctcatgaagttcaagacggtggaggaggcgatagag 1272
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|| || ||| |||| |||||| ||||| |||||||| |||||||||||| || || |
Sbjct: 1273 aaggccaactgcaccaagtacgggctggctgccggcattgtgaccaagaacctcaacatt 1332
Query: 414 gccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcg 473
||||||| |||||| |||| | || |||||| | | ||| | ||||||||||||||
Sbjct: 1333 gccaacatggtgtcgaggtcagtgcgggccggcacggtgtgggtgaactgctacttcgcc 1392
Query: 474 ttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggc 533
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 1393 ttcgaccccgacgcgccgttcggcgggtacaagatgagcgggttcggccgggaccaaggg 1452
Query: 534 atggacgcgctcgacaagtacctgcagaccaagaccgt 571
|||| ||| | ||||||||||||||| |||||||||
Sbjct: 1453 atggtcgccatggacaagtacctgcaggtcaagaccgt 1490
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 925 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 984
Query: 63 g 63
|
Sbjct: 985 g 985
>gb|AU164501.1|AU164501 AU164501 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 507
Score = 159 bits (80), Expect = 3e-036
Identities = 242/296 (81%)
Strand = Plus / Plus
Query: 276 atgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagacc 335
|||||||| || || || || ||||| || ||||||||| | |||||||| ||||||||
Sbjct: 17 atgacgattgcgcaagaggagatcttcggcccggtgatgtccctcatgaagttcaagacg 76
Query: 336 gtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtg 395
|||||||||| ||| |||| || ||| |||| |||||| ||||| |||||||| |||
Sbjct: 77 gtggaggaggcgatagagaaggccaactgcaccaagtacgggctggctgccggcattgtg 136
Query: 396 accaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctgg 455
||||||||| || || | ||||||| |||||| |||| | || |||||| | | |||
Sbjct: 137 accaagaacctcaacattgccaacatggtgtcgaggtcagtgcgggccggcacggtgtgg 196
Query: 456 atcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcggg 515
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 197 gtgaactgctacttcgccttcgaccccgacgcgccgttcggcgggtacaagatgagcggg 256
Query: 516 ttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgt 571
|||||| |||| || |||| ||| | ||||||||||||||| |||||||||
Sbjct: 257 ttcggccgggaccaagggatggtcgccatggacaagtacctgcaggtcaagaccgt 312
>gb|CA755628.1|CA755628 BR030024000_PLATE_H06_48_058.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030024000_PLATE_H06_48_058.ab1 similar to putative
cytosolic aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 772
Score = 159 bits (80), Expect = 3e-036
Identities = 242/296 (81%)
Strand = Plus / Plus
Query: 276 atgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagacc 335
|||||||| || || || || ||||| || ||||||||| | |||||||| ||||||||
Sbjct: 48 atgacgattgcgcaagaggagatcttcggcccggtgatgtccctcatgaagttcaagacg 107
Query: 336 gtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtg 395
|||||||||| ||| |||| || ||| |||| |||||| ||||| |||||||| |||
Sbjct: 108 gtggaggaggcgatagagaaggccaactgcaccaagtacgggctggctgccggcattgtg 167
Query: 396 accaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctgg 455
||||||||| || || | ||||||| |||||| |||| | || |||||| | | |||
Sbjct: 168 accaagaacctcaacattgccaacatggtgtcgaggtcagtgcgggccggcacggtgtgg 227
Query: 456 atcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcggg 515
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 228 gtgaactgctacttcgccttcgaccccgacgcgccgttcggcgggtacaagatgagcggg 287
Query: 516 ttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgt 571
|||||| |||| || |||| ||| | ||||||||||||||| |||||||||
Sbjct: 288 ttcggccgggaccaagggatggtcgccatggacaagtacctgcaggtcaagaccgt 343
>gb|AU164502.1|AU164502 AU164502 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0133, mRNA sequence
Length = 611
Score = 155 bits (78), Expect = 4e-035
Identities = 219/266 (82%)
Strand = Plus / Plus
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||| | |||||||| |||||||| |||||||||| ||| |||| || ||| |
Sbjct: 47 ccggtgatgtccctcatgaagttcaagacggtggaggaggcgatagagaaggccaactgc 106
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtg 425
||| |||||| ||||| |||||||| |||||||||||| || || | ||||||| |||
Sbjct: 107 accaagtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtg 166
Query: 426 tcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggac 485
||| |||| | || |||||| | | ||| | |||||||||||||| |||||||| |||
Sbjct: 167 tcgaggtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgac 226
Query: 486 gcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctc 545
|||||||||||||||||||||||||||||||||||| |||| || |||| ||| |
Sbjct: 227 gcgccgttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatg 286
Query: 546 gacaagtacctgcagaccaagaccgt 571
||||||||||||||| |||||||||
Sbjct: 287 gacaagtacctgcaggtcaagaccgt 312
>gb|CF303810.1|CF303810 ABF1--03-E11.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-E11, mRNA sequence
Length = 455
Score = 153 bits (77), Expect = 2e-034
Identities = 158/185 (85%)
Strand = Plus / Minus
Query: 417 aacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttc 476
||||| || |||||||| ||||| || || || ||||||||||| |||||| ||| |||
Sbjct: 451 aacacggtttcgcggtcgatccgggcaggggcaatctggatcaattgctacctcggcttc 392
Query: 477 gacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatg 536
||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 391 gaccccgacgtgccgttcggggggtacaagatgagcggcttcggcaaggacatgggcatg 332
Query: 537 gacgcgctcgacaagtacctgcagaccaagaccgtggtcactccgctgtacaacactcca 596
||||| || || |||||||| || |||||| | |||||||| || || |||||||| ||
Sbjct: 331 gacgcccttgagaagtacctccacaccaaggcggtggtcacccctctttacaacacccct 272
Query: 597 tggct 601
|||||
Sbjct: 271 tggct 267
>gb|AU070169.1|AU070169 AU070169 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0094_21A, mRNA sequence
Length = 502
Score = 129 bits (65), Expect = 3e-027
Identities = 167/201 (83%)
Strand = Plus / Plus
Query: 371 gtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcg 430
|||||| ||||| |||||||| |||||||||||| || || | ||||||| |||||| |
Sbjct: 28 gtacgggctggctgccggcattgtgaccaagaacctcaacattgccaacatggtgtcgag 87
Query: 431 gtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgcc 490
||| | || |||||| | | ||| | |||||||||||||| |||||||| ||||||||
Sbjct: 88 gtcagtgcgggccggcacggtgtgggtgaactgctacttcgccttcgaccccgacgcgcc 147
Query: 491 gttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaa 550
||||||||||||||||||||||||||||||| |||| || |||| ||| | |||||
Sbjct: 148 gttcggcgggtacaagatgagcgggttcggccgggaccaagggatggtcgccatggacaa 207
Query: 551 gtacctgcagaccaagaccgt 571
|||||||||| |||||||||
Sbjct: 208 gtacctgcaggtcaagaccgt 228
>gb|D39230.1|D39230 RICR3072A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 343
Score = 97.6 bits (49), Expect = 9e-018
Identities = 98/113 (86%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 33 aactgctacttcgccttcgaccccgacgcgccgttcgg-gggtacaagatgagcgggttc 91
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgt 571
||| |||| || |||| ||| | ||||||||||||||| |||||||||
Sbjct: 92 ggccgggaccaagggatggtcgccatggacaagtacctgcaggtcaagaccgt 144
>dbj|AP003941.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1111_E06,
*** SEQUENCING IN PROGRESS ***
Length = 141036
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 30424 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 30473
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 29802 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 29858
Query: 259 c 259
|
Sbjct: 29859 c 29859
>dbj|AK062788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B11, full
insert sequence
Length = 502
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 252 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 301
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 373837 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 373886
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 373215 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 373271
Query: 259 c 259
|
Sbjct: 373272 c 373272
>gb|AACV01014457.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014457, whole
genome shotgun sequence
Length = 8373
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 3207 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 3158
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 3829 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 3773
Query: 259 c 259
|
Sbjct: 3772 c 3772
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0502H06
Length = 165630
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 83233 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 83282
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 82611 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 82667
Query: 259 c 259
|
Sbjct: 82668 c 82668
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 4243047 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 4243096
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 4242425 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 4242481
Query: 259 c 259
|
Sbjct: 4242482 c 4242482
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 21941784 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 21941833
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 21941162 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 21941218
Query: 259 c 259
|
Sbjct: 21941219 c 21941219
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagt 552
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 22908411 caagatgagcgggttcggcaaggacgacagcatgcacgcgctcgacaagt 22908460
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 22907789 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 22907845
Query: 259 c 259
|
Sbjct: 22907846 c 22907846
>gb|CV152395.1|CV152395 LD83-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 650
Score = 58.0 bits (29), Expect = 8e-006
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 234 tactacatcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggat 293
|||||||| ||||| ||||| || ||| |||||||| || |||||||| || || ||
Sbjct: 520 tactacattgagcctaccatatttgtggatgtcaaggaggaaatgacgattgcgcaagaa 579
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtgga 340
|| ||||| || ||||||||| | |||||||| |||||||| |||||
Sbjct: 580 gagatcttcggnccggtgatgtccctcatgaagttcaagacngtgga 626
Score = 58.0 bits (29), Expect = 8e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggcc 62
|||||||| ||||| |||| || || |||||||||||||| ||||| ||||||||||||
Sbjct: 293 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaagaaggcc 352
Query: 63 g 63
|
Sbjct: 353 g 353
>dbj|AK107309.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D05, full
insert sequence
Length = 1675
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 231 ggctactacatcgagcccaccatcttcacggacgt 265
||||||| ||||||||||||||||||||| |||||
Sbjct: 1201 ggctacttcatcgagcccaccatcttcaccgacgt 1235
>gb|AU031992.1|AU031992 AU031992 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3072_8Z, mRNA sequence
Length = 457
Score = 52.0 bits (26), Expect = 5e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatg-agcgggttcggc 521
||||||||||||||||||||| ||||||||||||
Sbjct: 74 ccgttcggcgggtacaagatgnagcgggttcggc 107
>dbj|AG211890.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF6027_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF6027, genomic survey sequence
Length = 560
Score = 46.1 bits (23), Expect = 0.029
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 199 tcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttca 258
|||| ||||||||||||||||| || || || |||||||||||||||||||| ||||
Sbjct: 249 tcacgggagggaagccctgcggt---aagaaagggtactacatcgagcccaccattttca 193
Query: 259 c 259
|
Sbjct: 192 c 192
>gb|CV723586.1|CV723586 root--04-B06.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-B06, mRNA sequence
Length = 479
Score = 46.1 bits (23), Expect = 0.029
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 3 gtggccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaaga 57
|||||||| ||||| |||| || || |||||||||||||| ||||| |||||||
Sbjct: 425 gtggccgggtcacgcgtctatgtccaagaagggatctacgatgagtttgtgaaga 479
>gb|AU068084.1|AU068084 AU068084 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11828_6Z, mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 410 ccgttcggcggctacaagatgagcgg 435
>gb|AU068112.1|AU068112 AU068112 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11871_6Z, mRNA sequence
Length = 597
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 297 ccgttcggcggctacaagatgagcgg 322
>gb|AU092286.1|AU092286 AU092286 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11745, mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 376 ccgttcggcggctacaagatgagcgg 401
>gb|AU094406.1|AU094406 AU094406 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10314, mRNA sequence
Length = 334
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 39 ccgttcggcggctacaagatgagcgg 64
>gb|AU108608.1|AU108608 AU108608 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C12691, mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 377 ccgttcggcggctacaagatgagcgg 402
>gb|CB642445.1|CB642445 OSJNEb02K04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb02K04 3', mRNA sequence
Length = 829
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tctacgacgagttcgtgaagaaggcc 62
||||||||||||||||| ||||||||
Sbjct: 777 tctacgacgagttcgtggagaaggcc 752
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 328 ccgttcggcggctacaagatgagcgg 303
>gb|CB643863.1|CB643863 OSJNEb04M17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M17 3', mRNA sequence
Length = 815
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tctacgacgagttcgtgaagaaggcc 62
||||||||||||||||| ||||||||
Sbjct: 787 tctacgacgagttcgtggagaaggcc 762
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 338 ccgttcggcggctacaagatgagcgg 313
>gb|CB644637.1|CB644637 OSJNEb05P02.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05P02 3', mRNA sequence
Length = 838
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tctacgacgagttcgtgaagaaggcc 62
||||||||||||||||| ||||||||
Sbjct: 787 tctacgacgagttcgtggagaaggcc 762
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 338 ccgttcggcggctacaagatgagcgg 313
>gb|CB644745.1|CB644745 OSJNEb06B13.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06B13 3', mRNA sequence
Length = 830
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tctacgacgagttcgtgaagaaggcc 62
||||||||||||||||| ||||||||
Sbjct: 588 tctacgacgagttcgtggagaaggcc 563
>gb|CB644909.1|CB644909 OSJNEb06F05.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06F05 3', mRNA sequence
Length = 760
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 338 ccgttcggcggctacaagatgagcgg 313
>gb|CB646552.1|CB646552 OSJNEb09B16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09B16 3', mRNA sequence
Length = 764
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tctacgacgagttcgtgaagaaggcc 62
||||||||||||||||| ||||||||
Sbjct: 736 tctacgacgagttcgtggagaaggcc 711
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 287 ccgttcggcggctacaagatgagcgg 262
>gb|CB647572.1|CB647572 OSJNEb10I22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I22 3', mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 269 ccgttcggcggctacaagatgagcgg 244
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 977,426
Number of Sequences: 438736
Number of extensions: 977426
Number of successful extensions: 6508
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6113
Number of HSP's gapped (non-prelim): 353
length of query: 800
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 779
effective length of database: 2,791,206,460
effective search space: 2174349832340
effective search space used: 2174349832340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)