BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.21
(693 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB662829.1|CB662829 OSJNEd07D09.f OSJNEd Oryza sativa (j... 48 0.006
gb|CB674647.1|CB674647 OSJNEe09M18.f OSJNEe Oryza sativa (j... 48 0.006
dbj|AK068614.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK120488.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 48 0.006
dbj|AP003766.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AACV01014816.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|AP004797.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AQ273257.1|AQ273257 nbxb0029H15f CUGI Rice BAC Library O... 42 0.39
gb|AQ329439.1|AQ329439 nbxb0045A19r CUGI Rice BAC Library O... 42 0.39
gb|DU133444.1|DU133444 UCDRGT2644_5.1 UCD RGT Rice Insertio... 42 0.39
emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-gr... 42 0.39
dbj|AK071372.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, N... 42 0.39
gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
gb|AACV01021195.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|NM_195684.1| Oryza sativa (japonica cultivar-group) put... 42 0.39
ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chr... 42 0.39
ref|XM_472852.1| Oryza sativa (japonica cultivar-group), p... 42 0.39
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.39
gb|CH401251.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromoso... 42 0.39
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
>gb|CB662829.1|CB662829 OSJNEd07D09.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07D09 5', mRNA sequence
Length = 809
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 577 ggcatagaaccatatgtaactctcttccactgggac 612
>gb|CB674647.1|CB674647 OSJNEe09M18.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M18 5', mRNA sequence
Length = 758
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 419 ggcatagaaccatatgtaactctcttccactgggac 454
>dbj|AK068614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157P14, full
insert sequence
Length = 3151
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 1932 ggcatagaaccatatgtaactctcttccactgggac 1967
>dbj|AK120488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H18, full
insert sequence
Length = 3151
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 1932 ggcatagaaccatatgtaactctcttccactgggac 1967
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 5560507 ggcatagaaccatatgtaactctcttccactgggac 5560542
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0009H10
Length = 175754
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 25928 ggcatagaaccatatgtaactctcttccactgggac 25963
>gb|AACV01014816.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014816, whole
genome shotgun sequence
Length = 44572
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 22363 ggcatagaaccatatgtaactctcttccactgggac 22328
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0547F09
Length = 140615
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 139841 ggcatagaaccatatgtaactctcttccactgggac 139876
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 9501913 ggcatagaaccatatgtaactctcttccactgggac 9501948
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 27200650 ggcatagaaccatatgtaactctcttccactgggac 27200685
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.006
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 36 ggcatagaaccatatgtgacacttttccactgggac 71
||||||||||||||||| || || ||||||||||||
Sbjct: 28095022 ggcatagaaccatatgtaactctcttccactgggac 28095057
>gb|AQ273257.1|AQ273257 nbxb0029H15f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0029H15f, DNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 167 gtgaagcactggatcaccttcaacgagcc 195
>gb|AQ329439.1|AQ329439 nbxb0045A19r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0045A19r, DNA sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 168 gtgaagcactggatcaccttcaacgagcc 196
>gb|DU133444.1|DU133444 UCDRGT2644_5.1 UCD RGT Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RGT2644_5.1, DNA sequence
Length = 303
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 127 gtgaagcactggatcaccttcaacgagcc 99
>emb|AL606591.1|OSJN00030 Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0053D18,
*** SEQUENCING IN PROGRESS ***
Length = 156939
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 119606 aaccatttgttacccttttccactgggactcacctca 119642
>dbj|AK071372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094F17, full
insert sequence
Length = 1842
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 613 gtgaagcactggatcaccttcaacgagcc 641
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0065C16, from Chromosome 10, complete sequence
Length = 146391
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 73249 gtgaagcactggatcaccttcaacgagcc 73221
>gb|AACV01010847.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010847, whole
genome shotgun sequence
Length = 28761
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 19620 aaccatttgttacccttttccactgggactcacctca 19584
>gb|AACV01021195.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021195, whole
genome shotgun sequence
Length = 17610
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 14517 gtgaagcactggatcaccttcaacgagcc 14545
>ref|NM_195684.1| Oryza sativa (japonica cultivar-group) putative beta-glucosidase
(OSJNBa0065C16.15), mRNA
Length = 1548
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 571 gtgaagcactggatcaccttcaacgagcc 599
>ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 1671487
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 753420 gtgaagcactggatcaccttcaacgagcc 753448
>ref|XM_472852.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1590
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 449 aaccatttgttacccttttccactgggactcacctca 485
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 1319718 aaccatttgttacccttttccactgggactcacctca 1319682
>gb|CH401251.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000088
genomic scaffold, whole genome shotgun sequence
Length = 1117668
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 547678 gtgaagcactggatcaccttcaacgagcc 547706
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 2194414 aaccatttgttacccttttccactgggactcacctca 2194450
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 7800574 gtgaagcactggatcaccttcaacgagcc 7800602
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 2194414 aaccatttgttacccttttccactgggactcacctca 2194450
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
complete sequence
Length = 160155
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 36706 aaccatttgttacccttttccactgggactcacctca 36670
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 42.1 bits (21), Expect = 0.39
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 43 aaccatatgtgacacttttccactgggacacacctca 79
|||||| ||| || ||||||||||||||| |||||||
Sbjct: 23715794 aaccatttgttacccttttccactgggactcacctca 23715758
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 8447541 gtgaagcactggatcaccttcaacgagcc 8447569
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 42.1 bits (21), Expect = 0.39
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 177 gtgaagaactggttcaccttcaacgagcc 205
|||||| ||||| ||||||||||||||||
Sbjct: 8452640 gtgaagcactggatcaccttcaacgagcc 8452668
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 830,470
Number of Sequences: 438736
Number of extensions: 830470
Number of successful extensions: 4053
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3930
Number of HSP's gapped (non-prelim): 123
length of query: 693
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 672
effective length of database: 2,791,206,460
effective search space: 1875690741120
effective search space used: 1875690741120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)