BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805320.2.1
(955 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB680382.1|CB680382 OSJNEf04P12.f OSJNEf Oryza sativa (j... 305 2e-080
gb|CB681237.1|CB681237 OSJNEf07D13.r OSJNEf Oryza sativa (j... 305 2e-080
dbj|AK111678.1| Oryza sativa (japonica cultivar-group) cDNA... 305 2e-080
gb|AY598357.1| Oryza sativa (japonica cultivar-group) skp1 ... 305 2e-080
gb|CB681236.1|CB681236 OSJNEf07D13.f OSJNEf Oryza sativa (j... 289 1e-075
gb|AU197275.1|AU197275 AU197275 Rice panicle at flowering s... 281 3e-073
gb|AU082363.1|AU082363 AU082363 Rice callus Oryza sativa (j... 278 5e-072
gb|AU029392.2|AU029392 AU029392 Rice panicle shorter than 3... 278 5e-072
gb|CA755682.1|CA755682 BR030026000_PLATE_F11_86_094.ab1 OA ... 278 5e-072
gb|CO436002.1|CO436002 OsMR924 5MT resistant rice mutant cD... 278 5e-072
gb|AACV01022992.1| Oryza sativa (japonica cultivar-group) c... 278 5e-072
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 278 5e-072
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 278 5e-072
gb|AU064375.1|AU064375 AU064375 Rice panicle shorter than 3... 272 3e-070
gb|CF313403.1|CF313403 HD--01-I09.g1 OsHDAC1-overexpressing... 272 3e-070
gb|AC137752.4| Oryza sativa (japonica cultivar-group) chrom... 270 1e-069
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 270 1e-069
gb|BE039201.1|BE039201 OA01B11 OA Oryza sativa (japonica cu... 262 3e-067
gb|C99448.2|C99448 C99448 Rice panicle (longer than 10cm) O... 246 2e-062
gb|BP184895.1|BP184895 BP184895 pNS rice callus cDNA Oryza ... 246 2e-062
gb|C29163.1|C29163 C29163 Rice callus cDNA Oryza sativa (ja... 232 3e-058
gb|C28003.1|C28003 C28003 Rice callus cDNA Oryza sativa (ja... 226 2e-056
gb|AU182489.1|AU182489 AU182489 Rice panicle at flowering s... 210 1e-051
dbj|AP005970.1| Oryza sativa (japonica cultivar-group) chro... 204 6e-050
dbj|AK111945.1| Oryza sativa (japonica cultivar-group) cDNA... 204 6e-050
dbj|AP006149.2| Oryza sativa (japonica cultivar-group) geno... 204 6e-050
gb|AACV01020464.1| Oryza sativa (japonica cultivar-group) c... 204 6e-050
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 204 6e-050
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 204 6e-050
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 204 6e-050
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 204 6e-050
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 204 6e-050
gb|AU225662.1|AU225662 AU225662 Oryza sativa Koshihikari pi... 192 2e-046
gb|C99394.1|C99394 C99394 Rice panicle at ripening stage Or... 190 1e-045
gb|AU029485.1|AU029485 AU029485 Rice panicle shorter than 3... 170 9e-040
dbj|AP004187.3| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
dbj|AP005873.3| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
gb|AACV01003152.1| Oryza sativa (japonica cultivar-group) c... 168 4e-039
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 168 4e-039
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 168 4e-039
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 168 4e-039
gb|AU082358.1|AU082358 AU082358 Rice callus Oryza sativa (j... 145 5e-032
gb|AU082411.1|AU082411 AU082411 Rice panicle shorter than 3... 145 5e-032
gb|CV721459.1|CV721459 YBH--04-D05.b1 Rice before heading y... 145 5e-032
gb|AU082412.1|AU082412 AU082412 Rice panicle shorter than 3... 139 3e-030
gb|C97213.1|C97213 C97213 Rice callus Oryza sativa (japonic... 137 1e-029
gb|AU164085.1|AU164085 AU164085 Rice panicle (longer than 1... 90 3e-015
dbj|AP005796.1| Oryza sativa (japonica cultivar-group) chro... 66 4e-008
dbj|AK107960.1| Oryza sativa (japonica cultivar-group) cDNA... 66 4e-008
dbj|AP005878.2| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
dbj|AP005547.3| Oryza sativa (japonica cultivar-group) geno... 66 4e-008
gb|AACV01019350.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AACV01019354.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
ref|XM_450430.1| Oryza sativa (japonica cultivar-group), mRNA 66 4e-008
ref|XM_450437.1| Oryza sativa (japonica cultivar-group), mRNA 66 4e-008
ref|XM_450439.1| Oryza sativa (japonica cultivar-group), mRNA 66 4e-008
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 66 4e-008
gb|CH401240.1| Oryza sativa (japonica cultivar-group) chrom... 66 4e-008
emb|AL607092.1|OSJN01000 Oryza sativa (japonica cultivar-gr... 64 1e-007
dbj|AP003824.3| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
dbj|AP005473.4| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|AACV01015164.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|NM_186291.1| Oryza sativa (japonica cultivar-group), mRNA 64 1e-007
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401219.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
dbj|AP004377.1| Oryza sativa (japonica cultivar-group) chro... 58 9e-006
dbj|AP004009.3| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
dbj|AP004341.2| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
gb|AACV01016826.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
ref|XM_479207.1| Oryza sativa (japonica cultivar-group), mRNA 58 9e-006
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 58 9e-006
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 58 9e-006
gb|AY336992.1| Oryza sativa (japonica cultivar-group) SKP1 ... 52 6e-004
dbj|AP003962.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
dbj|AP004397.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AY600992.1| Oryza sativa (japonica cultivar-group) skp1-... 52 6e-004
dbj|AP005093.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AACV01018316.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
gb|AACV01019973.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|XM_482078.1| Oryza sativa (japonica cultivar-group), mRNA 52 6e-004
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 52 6e-004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AACV01021329.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|NM_196037.1| Oryza sativa (japonica cultivar-group) hyp... 48 0.009
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 48 0.009
ref|XM_450435.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
gb|CH401253.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AC083945.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP004189.1| Oryza sativa (japonica cultivar-group) chro... 46 0.035
dbj|AP005198.3| Oryza sativa (japonica cultivar-group) geno... 46 0.035
gb|AACV01016786.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
gb|AACV01018317.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
ref|XM_479156.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.035
ref|XM_482076.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.035
gb|AZ133882.1|AZ133882 OSJNBb0112P03r CUGI Rice BAC Library... 44 0.14
gb|AU062797.1|AU062797 AU062797 Rice callus Oryza sativa (j... 44 0.14
gb|AU082625.1|AU082625 AU082625 Rice callus Oryza sativa (j... 44 0.14
gb|AU082630.1|AU082630 AU082630 Rice callus Oryza sativa (j... 44 0.14
gb|AU182529.1|AU182529 AU182529 Rice panicle at flowering s... 44 0.14
dbj|AK060974.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK073278.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
gb|AY600991.1| Oryza sativa (japonica cultivar-group) skp1-... 44 0.14
gb|AACV01012889.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01016827.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NM_193015.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
ref|NM_185417.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.14
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 44 0.14
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.14
>gb|CB680382.1|CB680382 OSJNEf04P12.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf04P12 5', mRNA sequence
Length = 866
Score = 305 bits (154), Expect = 2e-080
Identities = 226/250 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 561
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 560 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 501
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 500 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 441
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcc 577
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 440 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcc 381
Query: 578 tcaccggagg 587
|| |||||||
Sbjct: 380 tcgccggagg 371
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 299 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 240
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 239 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 180
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 179 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 120
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 119 ttctctccctcagccgccatcgat 96
>gb|CB681237.1|CB681237 OSJNEf07D13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07D13 3', mRNA sequence
Length = 766
Score = 305 bits (154), Expect = 2e-080
Identities = 226/250 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 301
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 302 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 361
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 362 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 421
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcc 577
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 422 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcc 481
Query: 578 tcaccggagg 587
|| |||||||
Sbjct: 482 tcgccggagg 491
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 563 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 622
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 623 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 682
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 683 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 742
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 743 ttctctccctcagccgccatcgat 766
>dbj|AK111678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158P16, full
insert sequence
Length = 867
Score = 305 bits (154), Expect = 2e-080
Identities = 226/250 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 581
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 580 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 521
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 520 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 461
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcc 577
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 460 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcc 401
Query: 578 tcaccggagg 587
|| |||||||
Sbjct: 400 tcgccggagg 391
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 319 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 260
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 259 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 200
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 199 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 140
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 139 ttctctccctcagccgccatcgat 116
>gb|AY598357.1| Oryza sativa (japonica cultivar-group) skp1 protein mRNA, complete
cds
Length = 836
Score = 305 bits (154), Expect = 2e-080
Identities = 226/250 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 519
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 518 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 459
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 458 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 399
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcc 577
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 398 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcc 339
Query: 578 tcaccggagg 587
|| |||||||
Sbjct: 338 tcgccggagg 329
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 257 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 198
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 197 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 138
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 137 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 78
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 77 ttctctccctcagccgccatcgat 54
>gb|CB681236.1|CB681236 OSJNEf07D13.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07D13 5', mRNA sequence
Length = 815
Score = 289 bits (146), Expect = 1e-075
Identities = 224/250 (89%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 631 tactcaaaagcccactggttctccatgcggatctcctcttcctcctcaggggtgaagtcg 572
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 571 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 512
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||| ||||||| || ||||| || |||| ||||
Sbjct: 511 acagtctggcaagtaaggtccagcaaccccctgatgttgaggtagttcgcggccaggatg 452
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcc 577
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 451 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcc 392
Query: 578 tcaccggagg 587
|| |||||||
Sbjct: 391 tcgccggagg 382
Score = 222 bits (112), Expect = 3e-055
Identities = 181/204 (88%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
|||||||||||||||||| |||| |||| ||| |||||||||||||||||| | || ||
Sbjct: 310 acgtgcttgttgcagtacccgatgacctaggagaggatcttggagttgacgctggggagc 251
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
|||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 250 gggatgccgtagtcggcgcagtcgtcctcgatcatgtggcggatcctctgcgactccatc 191
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||| ||||||||| || |||||||| || ||||| ||||| |||
Sbjct: 190 gccaccgcctcctccacctagaactcctccccgtcggagctcttcagggtgatcatgttc 131
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 130 ttctctccctcagccgccatcgat 107
>gb|AU197275.1|AU197275 AU197275 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3318, mRNA sequence
Length = 404
Score = 281 bits (142), Expect = 3e-073
Identities = 224/252 (88%)
Strand = Plus / Minus
Query: 336 cttactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagt 395
||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 307 cttactcaaaagcccactggttcctcctncggatctcctcttcctcctcaggggtgaagt 248
Query: 396 cattcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcag 455
| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||
Sbjct: 247 cgttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcag 188
Query: 456 caacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaaga 515
|||||||||| || || ||||| |||| ||||||||||| || ||||| || |||| |
Sbjct: 187 caacagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccagna 128
Query: 516 tgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggt 575
|||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 127 tgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggt 68
Query: 576 cctcaccggagg 587
|||| |||||||
Sbjct: 67 cctcgccggagg 56
>gb|AU082363.1|AU082363 AU082363 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53661, mRNA sequence
Length = 340
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 333 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 274
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 273 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 214
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 213 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 154
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 153 ttctctccctcagccgccatcgat 130
>gb|AU029392.2|AU029392 AU029392 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30294, mRNA sequence
Length = 307
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 300 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 241
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 240 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 181
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 180 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 121
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 120 ttctctccctcagccgccatcgat 97
>gb|CA755682.1|CA755682 BR030026000_PLATE_F11_86_094.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030026000_PLATE_F11_86_094.ab1 similar to putative
kinetochore protein [Hordeum vulgare subsp. vulgare],
mRNA sequence
Length = 672
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 300 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 241
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 240 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 181
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 180 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 121
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 120 ttctctccctcagccgccatcgat 97
Score = 242 bits (122), Expect = 3e-061
Identities = 214/241 (88%), Gaps = 3/241 (1%)
Strand = Plus / Minus
Query: 347 gcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattcttgatg 406
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 609 gcccactggttctccntgcg-atctc-tcttcctcctcaggggtgaagtcgttcttgatg 552
Query: 407 ttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaacagtctga 466
|||||||||| ||| ||||| || || || || ||||||||||||||||||||||||||
Sbjct: 551 ttgaaggtct-gcggatctcctcaggagtgttccccttgatcatgtcagcaacagtctgg 493
Query: 467 caggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgaggtcgaaa 526
|| || ||||| |||| ||||||||||| || ||||| || |||| ||||||||||||
Sbjct: 492 caagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatgaggtcgaag 433
Query: 527 agcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgaggtcctcaccggag 586
|| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 432 agggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgaggtcctcgccggag 373
Query: 587 g 587
|
Sbjct: 372 g 372
>gb|CO436002.1|CO436002 OsMR924 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 873
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 372 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 313
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 312 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 253
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 252 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 193
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 192 ttctctccctcagccgccatcgat 169
Score = 161 bits (81), Expect = 9e-037
Identities = 131/148 (88%)
Strand = Plus / Minus
Query: 440 cccttgatcatgtcagcaacagtctgacaggtcaggtcgagcagacccttgatgttcaga 499
|||||||||||||||||||||||||| || || | ||| |||| ||||||||||| ||
Sbjct: 591 cccttgatcatgtcagcaacagtctggcaagtaangtccagcaaccccttgatgttgagg 532
Query: 500 tagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgca 559
||||| || |||| |||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 531 tagttcgcggccaggatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcg 472
Query: 560 tcccagttcttgaggtcctcaccggagg 587
|||||||||||||||||||| |||||||
Sbjct: 471 tcccagttcttgaggtcctcgccggagg 444
>gb|AACV01022992.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022992, whole
genome shotgun sequence
Length = 39479
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 16408 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 16467
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 16468 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 16527
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 16528 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 16587
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 16588 ttctctccctcagccgccatcgat 16611
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14079 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 14138
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 14139 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 14198
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 14199 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 14245
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 16263 gatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgag 16322
Query: 574 gtcctcaccggagg 587
|||||| |||||||
Sbjct: 16323 gtcctcgccggagg 16336
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 21342 tcatcttcttctcgccctcggc 21321
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 3888387 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 3888328
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3888327 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 3888268
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 3888267 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 3888208
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 3888207 ttctctccctcagccgccatcgat 3888184
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3890716 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 3890657
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 3890656 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 3890597
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 3890596 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 3890550
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3888532 gatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgag 3888473
Query: 574 gtcctcaccggagg 587
|||||| |||||||
Sbjct: 3888472 gtcctcgccggagg 3888459
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 3883453 tcatcttcttctcgccctcggc 3883474
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 278 bits (140), Expect = 5e-072
Identities = 188/204 (92%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 11743431 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 11743372
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 11743371 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 11743312
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 11743311 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 11743252
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 11743251 ttctctccctcagccgccatcgat 11743228
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11745760 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 11745701
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 11745700 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 11745641
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 11745640 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 11745594
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 11743576 gatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgag 11743517
Query: 574 gtcctcaccggagg 587
|||||| |||||||
Sbjct: 11743516 gtcctcgccggagg 11743503
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 11738497 tcatcttcttctcgccctcggc 11738518
>gb|AU064375.1|AU064375 AU064375 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30372_1A, mRNA sequence
Length = 321
Score = 272 bits (137), Expect = 3e-070
Identities = 187/204 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 314 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 255
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 254 gggatgccgttgtcggcgnagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 195
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 194 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 135
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 134 ttctctccctcagccgccatcgat 111
>gb|CF313403.1|CF313403 HD--01-I09.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-I09, mRNA sequence
Length = 483
Score = 272 bits (137), Expect = 3e-070
Identities = 209/233 (89%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 175
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 174 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 115
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 114 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 55
Query: 518 aggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttctt 570
|||||||| || |||||||||||||||||||||||||| || |||||| ||||
Sbjct: 54 aggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagatctt 2
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22,
complete sequence
Length = 161172
Score = 270 bits (136), Expect = 1e-069
Identities = 187/204 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 106889 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 106830
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 106829 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 106770
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||| ||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 106769 gccaccggctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 106710
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 106709 ttctctccctcagccgccatcgat 106686
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109218 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 109159
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 109158 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 109099
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 109098 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 109052
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 107034 gatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgag 106975
Query: 574 gtcctcaccggagg 587
|||||| |||||||
Sbjct: 106974 gtcctcgccggagg 106961
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 101954 tcatcttcttctcgccctcggc 101975
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 270 bits (136), Expect = 1e-069
Identities = 187/204 (91%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 14963790 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 14963731
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 14963730 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccatc 14963671
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||| ||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 14963670 gccaccggctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 14963611
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 14963610 ttctctccctcagccgccatcgat 14963587
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14966119 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 14966060
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 14966059 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 14966000
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 14965999 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 14965953
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 14963935 gatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgtcccagttcttgag 14963876
Query: 574 gtcctcaccggagg 587
|||||| |||||||
Sbjct: 14963875 gtcctcgccggagg 14963862
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 14958855 tcatcttcttctcgccctcggc 14958876
>gb|BE039201.1|BE039201 OA01B11 OA Oryza sativa (japonica cultivar-group) cDNA 5' similar
to skp1, mRNA sequence
Length = 591
Score = 262 bits (132), Expect = 3e-067
Identities = 187/204 (91%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 282 acgtgcttgttgcagtactcgatgaccttggagaggatcttggagttgacgttggggagc 223
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 222 gggatgccgttgtcggcgcagtcgtcctcgatcatgtggcggatcgtctgcgactccat- 164
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 163 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 104
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 103 ttctctccctcagccgccatcgat 80
Score = 129 bits (65), Expect = 3e-027
Identities = 177/209 (84%), Gaps = 4/209 (1%)
Strand = Plus / Minus
Query: 373 ctcttcctcctcaggggtgaagtcattcttgatgttgaaggtcttgcgaatctcttctgg 432
|||||||||| || |||| ||||| ||||||||||||||||||| ||||||| || |
Sbjct: 568 ctcttcctcc-caagggtaaagtcgttcttgatgttgaaggtctgcggaatctcctcaga 510
Query: 433 tgtcttgcccttgatcat-gtcagcaacagtctgacaggtcaggtcgagcagacccttga 491
||||| || | |||||| ||||||||||||||| || || ||||| |||| |||| |||
Sbjct: 509 agtcttcccttggatcattgtcagcaacagtctggcaagtaaggtccagca-acccctga 451
Query: 492 t-gttcagatagtttgcagccaagatgaggtcgaaaagcgtggcctggtcgaccttgacg 550
| ||| || ||||| || |||| ||||||||| || || |||||||||||||||||||||
Sbjct: 450 ttgttgaggtagttcgcggccaggatgaggtcaaagagggtggcctggtcgaccttgacg 391
Query: 551 aagtccgcatcccagttcttgaggtcctc 579
||||| || ||||||||||||||||||||
Sbjct: 390 aagtcggcgtcccagttcttgaggtcctc 362
>gb|C99448.2|C99448 C99448 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20047, mRNA sequence
Length = 295
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 8 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 67
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 68 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 127
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgagg 520
||||| |||||||| || ||||| ||||||||||| || ||||||||||||| ||||||
Sbjct: 128 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagccaggatgaga 187
Query: 521 tcgaaaagcgtggcctggtcgaccttgacgaa 552
||||| || |||| ||||||||||||||||||
Sbjct: 188 tcgaagagggtggactggtcgaccttgacgaa 219
>gb|BP184895.1|BP184895 BP184895 pNS rice callus cDNA Oryza sativa (japonica
cultivar-group) cDNA clone 22C4AR008, mRNA sequence
Length = 614
Score = 246 bits (124), Expect = 2e-062
Identities = 190/212 (89%)
Strand = Plus / Minus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 580 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 521
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 520 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 461
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatgagg 520
||||| |||||||| || ||||| ||||||||||| || ||||||||||||| ||||||
Sbjct: 460 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagccaggatgaga 401
Query: 521 tcgaaaagcgtggcctggtcgaccttgacgaa 552
||||| || |||| ||||||||||||||||||
Sbjct: 400 tcgaagagggtggactggtcgaccttgacgaa 369
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 259 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 200
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 199 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 140
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 139 gccacggcctccgcgacctcgaacacctggccctcgcagct 99
>gb|C29163.1|C29163 C29163 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C63903_2A, mRNA sequence
Length = 303
Score = 232 bits (117), Expect = 3e-058
Identities = 182/204 (89%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
|||||||||||| |||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct: 300 acgtgcttgttgnagtactcgatgaccttggagaggatcttggagttgacgttggggagc 241
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
|||||||||||||||||||| || |||||||||||||| |||| | |||||||||| ||
Sbjct: 240 gggatgccgttgtcggcgcantcgtcctcgatcatgtgncggancg-ctgcgactccntc 182
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||||
Sbjct: 181 gccaccgcctcctccacctcgaactcctccccgtcggagctcttcagggtgatcatcttc 122
Query: 848 ttctcgccctcggcggccatcgat 871
||||| ||||| || |||||||||
Sbjct: 121 ttctctccctcagccgccatcgat 98
>gb|C28003.1|C28003 C28003 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53661_1A, mRNA sequence
Length = 308
Score = 226 bits (114), Expect = 2e-056
Identities = 184/206 (89%), Gaps = 2/206 (0%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttgga-gttgacgttaggaag 726
||||||||||||||||||||||| |||||| | ||||||||| | ||||||||| || ||
Sbjct: 307 acgtgcttgttgcagtactcgatgaccttgnagaggatcttgnaagttgacgttggggag 248
Query: 727 agggatgccgttgtcggcgcagtcatcctcgatcatgtggcgga-tggtctgcgactcca 785
|||||||||||||||| | |||| ||||||||||||||||||| | |||||||||||||
Sbjct: 247 cgggatgccgttgtcggngaagtcgtcctcgatcatgtggcggaatcgtctgcgactcca 188
Query: 786 tcgccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatct 845
||||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||
Sbjct: 187 tcgccaccgcctcctccacctcgaactcctccccgtcggagctcttnagggtgatcatct 128
Query: 846 tcttctcgccctcggcggccatcgat 871
||||||| ||||| || |||||||||
Sbjct: 127 tcttctctccctcagccgccatcgat 102
>gb|AU182489.1|AU182489 AU182489 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3318, mRNA sequence
Length = 442
Score = 210 bits (106), Expect = 1e-051
Identities = 163/182 (89%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 123
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 122 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 63
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagccaagatg 517
|||||||| || || ||||| |||| ||||||||||| || ||||| || |||| ||||
Sbjct: 62 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagttcgcggccaggatg 3
Query: 518 ag 519
||
Sbjct: 2 ag 1
>dbj|AP005970.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBa0087C18,
*** SEQUENCING IN PROGRESS ***
Length = 169030
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Minus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 140388 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 140329
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 140328 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 140269
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 140268 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 140218
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 138300 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 138241
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 138240 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 138181
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 138180 gccacggcctccgcgacctcgaacacctggccctcgcagct 138140
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 138448 gatgagatcgaagagggtggactggtcgaccttgacgaa 138410
>dbj|AK111945.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D07, full
insert sequence
Length = 1404
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 1104
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 1103 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 1044
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 1043 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 997
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1274F11
Length = 171257
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 34161 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 34220
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 34221 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 34280
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 34281 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 34331
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 36249 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 36308
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 36309 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 36368
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 36369 gccacggcctccgcgacctcgaacacctggccctcgcagct 36409
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 36101 gatgagatcgaagagggtggactggtcgaccttgacgaa 36139
>gb|AACV01020464.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020464, whole
genome shotgun sequence
Length = 11283
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Minus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 11092 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 11033
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 11032 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 10973
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 10972 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 10922
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 9004 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 8945
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 8944 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 8885
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 8884 gccacggcctccgcgacctcgaacacctggccctcgcagct 8844
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 9152 gatgagatcgaagagggtggactggtcgaccttgacgaa 9114
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 835572 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 835631
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 835632 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 835691
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 835692 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 835742
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 837660 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 837719
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 837720 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 837779
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 837780 gccacggcctccgcgacctcgaacacctggccctcgcagct 837820
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 837512 gatgagatcgaagagggtggactggtcgaccttgacgaa 837550
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 10398909 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 10398968
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 10398969 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 10399028
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 10399029 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 10399079
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 10400997 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 10401056
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 10401057 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 10401116
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 10401117 gccacggcctccgcgacctcgaacacctggccctcgcagct 10401157
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 343 gaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||| ||||||| ||||||||||| | |||||||| || ||||||||
Sbjct: 3932180 gaaggcccacgcgttctccttgcggatctccgcctcctcctcgggcgtgaagtc 3932233
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 10400849 gatgagatcgaagagggtggactggtcgaccttgacgaa 10400887
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 19872720 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 19872779
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 19872780 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 19872839
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 19872840 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 19872890
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 19874808 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 19874867
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 19874868 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 19874927
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 19874928 gccacggcctccgcgacctcgaacacctggccctcgcagct 19874968
Score = 65.9 bits (33), Expect = 4e-008
Identities = 83/99 (83%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 669 cgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaagag 728
||||||||||||||||||||| ||||||| ||||| | |||| |||||| | ||||
Sbjct: 4675122 cgtgcttgttgcagtactcgaccaccttggcgaggatatcggaggcgacgttggcgagag 4675181
Query: 729 ggatg---ccgttgtcggcgcagtcatcctcgatcatgt 764
||||| |||||| |||||||||||||||||||||||
Sbjct: 4675182 ggatggcgccgttggtggcgcagtcatcctcgatcatgt 4675220
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 4667964 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 4668020
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 4628699 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 4628755
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 343 gaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||| ||||||| ||||||||||| | |||||||| || ||||||||
Sbjct: 13405991 gaaggcccacgcgttctccttgcggatctccgcctcctcctcgggcgtgaagtc 13406044
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
||||||||||||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 4668250 ttgcagtactcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 4668309
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||| | |||||||||||||
Sbjct: 4668310 ttctccgtgcagccgtcctcgatcatgt 4668337
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 733 gccgttgtcggcgcagtcatcctcgatcatgt 764
||||||| |||||||||||||||||||||||
Sbjct: 4655216 gccgttggtggcgcagtcatcctcgatcatgt 4655247
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
|||||||| |||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 4628991 ttgcagtagtcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 4629050
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||||| |||||||||||||
Sbjct: 4629051 ttctccgtgcagtcgtcctcgatcatgt 4629078
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 19874660 gatgagatcgaagagggtggactggtcgaccttgacgaa 19874698
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 204 bits (103), Expect = 6e-050
Identities = 154/171 (90%)
Strand = Plus / Plus
Query: 341 tcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcattc 400
||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||
Sbjct: 20942072 tcgaaggcccactggttctccctcctcacctcctcttcttcctcgggggtgaagtcattc 20942131
Query: 401 ttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagcaaca 460
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 20942132 ttgatgttgaaggtcttgcggatctcctctggtgtcttccccttgatcatgtcagccacg 20942191
Query: 461 gtctgacaggtcaggtcgagcagacccttgatgttcagatagtttgcagcc 511
||||| |||||||| || ||||| ||||||||||| || ||||||||||||
Sbjct: 20942192 gtctggcaggtcagatccagcagtcccttgatgttgaggtagtttgcagcc 20942242
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 20944160 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 20944219
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 20944220 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 20944279
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 20944280 gccacggcctccgcgacctcgaacacctggccctcgcagct 20944320
Score = 65.9 bits (33), Expect = 4e-008
Identities = 83/99 (83%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 669 cgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaagag 728
||||||||||||||||||||| ||||||| ||||| | |||| |||||| | ||||
Sbjct: 5540891 cgtgcttgttgcagtactcgaccaccttggcgaggatatcggaggcgacgttggcgagag 5540950
Query: 729 ggatg---ccgttgtcggcgcagtcatcctcgatcatgt 764
||||| |||||| |||||||||||||||||||||||
Sbjct: 5540951 ggatggcgccgttggtggcgcagtcatcctcgatcatgt 5540989
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 5533734 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 5533790
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 5500214 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 5500270
Score = 52.0 bits (26), Expect = 6e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 343 gaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||| ||||||| ||||||||||| | |||||||| || ||||||||
Sbjct: 14573508 gaaggcccacgcgttctccttgcggatctccgcctcctcctcgggcgtgaagtc 14573561
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
||||||||||||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 5534020 ttgcagtactcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 5534079
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||| | |||||||||||||
Sbjct: 5534080 ttctccgtgcagccgtcctcgatcatgt 5534107
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 733 gccgttgtcggcgcagtcatcctcgatcatgt 764
||||||| |||||||||||||||||||||||
Sbjct: 5520986 gccgttggtggcgcagtcatcctcgatcatgt 5521017
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
|||||||| |||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 5500506 ttgcagtagtcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 5500565
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||||| |||||||||||||
Sbjct: 5500566 ttctccgtgcagtcgtcctcgatcatgt 5500593
Score = 46.1 bits (23), Expect = 0.035
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaa 552
|||||| ||||| || |||| ||||||||||||||||||
Sbjct: 20944012 gatgagatcgaagagggtggactggtcgaccttgacgaa 20944050
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 204 bits (103), Expect = 6e-050
Identities = 151/167 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14884369 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 14884310
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 14884309 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 14884250
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
|||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 14884249 acagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 14884203
Score = 44.1 bits (22), Expect = 0.14
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 840 tcatcttcttctcgccctcggc 861
||||||||||||||||||||||
Sbjct: 14878889 tcatcttcttctcgccctcggc 14878910
>gb|AU225662.1|AU225662 AU225662 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0643, mRNA sequence
Length = 459
Score = 192 bits (97), Expect = 2e-046
Identities = 142/157 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 312
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 313 ttcttgatgttgaaggtcttgcggatctcctcaggagtcttccccttgatcatgtcagca 372
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgt 494
|||||||| || || | ||| |||| ||||||||||
Sbjct: 373 acagtctggcaagtaatgtccagcaaccccttgatgt 409
>gb|C99394.1|C99394 C99394 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11132_1Z, mRNA sequence
Length = 421
Score = 190 bits (96), Expect = 1e-045
Identities = 151/168 (89%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 119
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtc-ttgcccttgatcatgtcagc 456
||||||||||||||||||||||| ||||| || || ||| || |||||||||||||||||
Sbjct: 118 ttcttgatgttgaaggtcttgcggatctcctcaggagtctttccccttgatcatgtcagc 59
Query: 457 aacagtctgacaggtcaggtcgagcagacccttgatgttcagatagtt 504
||||||||| || || ||||| |||| ||||||||||| || |||||
Sbjct: 58 aacagtctggcaagtaaggtccagcaaccccttgatgttgaggtagtt 11
>gb|AU029485.1|AU029485 AU029485 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30964_1Z, mRNA sequence
Length = 436
Score = 170 bits (86), Expect = 9e-040
Identities = 141/158 (89%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tactcaaaagcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtcg 124
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| ||||| || || || || ||||||||||||| ||||
Sbjct: 123 ttcttgatgttgaaggtcttgcggatctcctcaggagttttccccttgatcatgtaagca 64
Query: 458 acagtctgacaggtcaggtcgagcagacccttgatgtt 495
||||| || || || ||| | |||| ||||||||||||
Sbjct: 63 acagtttggcaagtaagggccagca-acccttgatgtt 27
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1435_F07
Length = 139041
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 34462 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 34521
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 34522 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 34581
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 34582 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 34638
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 34639 ttttcaccctc 34649
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 32481 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 32540
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 32541 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 32600
Query: 458 acagtctg 465
|| |||||
Sbjct: 32601 acggtctg 32608
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 34362 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 34420
Query: 570 tgaggtc 576
|||||||
Sbjct: 34421 tgaggtc 34427
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 32634 cccttgatgttgagatagtttgcagcc 32660
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1370C05
Length = 148271
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 80044 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 80103
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 80104 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 80163
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 80164 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 80220
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 80221 ttttcaccctc 80231
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 78063 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 78122
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 78123 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 78182
Query: 458 acagtctg 465
|| |||||
Sbjct: 78183 acggtctg 78190
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 79944 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 80002
Query: 570 tgaggtc 576
|||||||
Sbjct: 80003 tgaggtc 80009
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 78216 cccttgatgttgagatagtttgcagcc 78242
>gb|AACV01003152.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003152, whole
genome shotgun sequence
Length = 38308
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 1374 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 1315
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 1314 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 1255
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 1254 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 1198
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 1197 ttttcaccctc 1187
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Minus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3355 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 3296
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 3295 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 3236
Query: 458 acagtctg 465
|| |||||
Sbjct: 3235 acggtctg 3228
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 1474 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 1416
Query: 570 tgaggtc 576
|||||||
Sbjct: 1415 tgaggtc 1409
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 3202 cccttgatgttgagatagtttgcagcc 3176
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 85435 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 85494
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 85495 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 85554
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 85555 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 85611
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 85612 ttttcaccctc 85622
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 83454 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 83513
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 83514 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 83573
Query: 458 acagtctg 465
|| |||||
Sbjct: 83574 acggtctg 83581
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 85335 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 85393
Query: 570 tgaggtc 576
|||||||
Sbjct: 85394 tgaggtc 85400
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 83607 cccttgatgttgagatagtttgcagcc 83633
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006
genomic scaffold, whole genome shotgun sequence
Length = 13452964
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 96944 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 97003
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 97004 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 97063
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 97064 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 97120
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 97121 ttttcaccctc 97131
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 94963 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 95022
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 95023 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 95082
Query: 458 acagtctg 465
|| |||||
Sbjct: 95083 acggtctg 95090
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 96844 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 96902
Query: 570 tgaggtc 576
|||||||
Sbjct: 96903 tgaggtc 96909
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 95116 cccttgatgttgagatagtttgcagcc 95142
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome
shotgun sequence
Length = 36016269
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 96944 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 97003
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 97004 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 97063
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 97064 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 97120
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 97121 ttttcaccctc 97131
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 94963 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 95022
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 95023 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 95082
Query: 458 acagtctg 465
|| |||||
Sbjct: 95083 acggtctg 95090
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 96844 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 96902
Query: 570 tgaggtc 576
|||||||
Sbjct: 96903 tgaggtc 96909
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 95116 cccttgatgttgagatagtttgcagcc 95142
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
complete sequence
Length = 35954743
Score = 168 bits (85), Expect = 4e-039
Identities = 165/191 (86%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || ||
Sbjct: 85435 acgtgcttgttgcagtactcgataaccttggagaggatcttggaattcacgttggggagg 85494
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||| || ||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 85495 gggatcccattgtcggcgcatttatcctcgatcatgtgccggatggtctgagactccatg 85554
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagcttttgagggttatcatcttc 847
|||||||| ||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct: 85555 cccaccgcc---tccacctcgaattcctctccatccgagctcttcagcgttatcatcttc 85611
Query: 848 ttctcgccctc 858
|| || |||||
Sbjct: 85612 ttttcaccctc 85622
Score = 159 bits (80), Expect = 3e-036
Identities = 116/128 (90%)
Strand = Plus / Plus
Query: 338 tactcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtca 397
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 83454 tactcaaacgcccactggttctccctgcggatctcctcttcctcctcaggggccaagtcc 83513
Query: 398 ttcttgatgttgaaggtcttgcgaatctcttctggtgtcttgcccttgatcatgtcagca 457
||||||||||||||||||||||| || || || || |||||||||||||||||||| |||
Sbjct: 83514 ttcttgatgttgaaggtcttgcggatttcctccggagtcttgcccttgatcatgtctgca 83573
Query: 458 acagtctg 465
|| |||||
Sbjct: 83574 acggtctg 83581
Score = 85.7 bits (43), Expect = 4e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 510 ccaagatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttct 569
|||||||||||||||| || |||||||||||||||||||||||||| || | ||||||||
Sbjct: 85335 ccaagatgaggtcgaagagggtggcctggtcgaccttgacgaagtcggcgt-ccagttct 85393
Query: 570 tgaggtc 576
|||||||
Sbjct: 85394 tgaggtc 85400
Score = 46.1 bits (23), Expect = 0.035
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 485 cccttgatgttcagatagtttgcagcc 511
||||||||||| |||||||||||||||
Sbjct: 83607 cccttgatgttgagatagtttgcagcc 83633
>gb|AU082358.1|AU082358 AU082358 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53179, mRNA sequence
Length = 252
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 236 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 177
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 176 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 117
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 116 gccacggcctccgcgacctcgaacacctggccctcgcagct 76
>gb|AU082411.1|AU082411 AU082411 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30887, mRNA sequence
Length = 269
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 254 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 195
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 194 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 135
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 134 gccacggcctccgcgacctcgaacacctggccctcgcagct 94
>gb|CV721459.1|CV721459 YBH--04-D05.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-D05, mRNA sequence
Length = 295
Score = 145 bits (73), Expect = 5e-032
Identities = 139/161 (86%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 289 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 230
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 229 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 170
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 169 gccacggcctccgcgacctcgaacacctggccctcgcagct 129
>gb|AU082412.1|AU082412 AU082412 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30887, mRNA sequence
Length = 270
Score = 139 bits (70), Expect = 3e-030
Identities = 115/130 (88%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| |||||||||| | |||||| || ||
Sbjct: 254 acgtgcttgctgcagtactcgattaccttggagaggatcttggcggagacgttggggagc 195
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 194 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 135
Query: 788 gccaccgcct 797
||||| ||||
Sbjct: 134 gccacggcct 125
>gb|C97213.1|C97213 C97213 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53179_2A, mRNA sequence
Length = 279
Score = 137 bits (69), Expect = 1e-029
Identities = 138/161 (85%)
Strand = Plus / Minus
Query: 668 acgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaaga 727
||||||||| |||||||||||||||||||||| ||||||||| | |||||| || ||
Sbjct: 236 acgtgcttgctgcagtactcgattaccttggagaggatcttgacggagacgttggggagc 177
Query: 728 gggatgccgttgtcggcgcagtcatcctcgatcatgtggcggatggtctgcgactccatc 787
||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 176 gggatgccggtgtcggcgcacttgtcctcgatcatgtggcggatggtctgggactccatg 117
Query: 788 gccaccgcctcttccacctcgaactcctcgccatcggagct 828
||||| ||||| | ||||||||| ||| ||| ||| ||||
Sbjct: 116 gccacggcctccgcgacctcgaacacctggccctcgcagct 76
>gb|AU164085.1|AU164085 AU164085 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20050, mRNA sequence
Length = 393
Score = 89.7 bits (45), Expect = 3e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 514 gatgaggtcgaaaagcgtggcctggtcgaccttgacgaagtccgcatcccagttcttgag 573
|||||||||||| || |||| ||||||||||||||||||||| | ||||||||||||||
Sbjct: 283 gatgaggtcgaagagggtggnctggtcgaccttgacgaagtcggngtcccagttcttgag 342
Query: 574 gtcctcaccgg 584
|||||| ||||
Sbjct: 343 gtcctcgccgg 353
>dbj|AP005796.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone B1092H10, ***
SEQUENCING IN PROGRESS ***
Length = 137823
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 66807 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 66751
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 33287 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 33231
Score = 65.9 bits (33), Expect = 4e-008
Identities = 83/99 (83%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 669 cgtgcttgttgcagtactcgattaccttggataggatcttggagttgacgttaggaagag 728
||||||||||||||||||||| ||||||| ||||| | |||| |||||| | ||||
Sbjct: 26130 cgtgcttgttgcagtactcgaccaccttggcgaggatatcggaggcgacgttggcgagag 26071
Query: 729 ggatg---ccgttgtcggcgcagtcatcctcgatcatgt 764
||||| |||||| |||||||||||||||||||||||
Sbjct: 26070 ggatggcgccgttggtggcgcagtcatcctcgatcatgt 26032
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
|||||||| |||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 66515 ttgcagtagtcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 66456
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||||| |||||||||||||
Sbjct: 66455 ttctccgtgcagtcgtcctcgatcatgt 66428
Score = 48.1 bits (24), Expect = 0.009
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 733 gccgttgtcggcgcagtcatcctcgatcatgt 764
||||||| |||||||||||||||||||||||
Sbjct: 46035 gccgttggtggcgcagtcatcctcgatcatgt 46004
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
||||||||||||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 33001 ttgcagtactcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 32942
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||| | |||||||||||||
Sbjct: 32941 ttctccgtgcagccgtcctcgatcatgt 32914
>dbj|AK107960.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C08, full
insert sequence
Length = 803
Score = 65.9 bits (33), Expect = 4e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 340 ctcgaaggcccactggttctccctgcggatctcctcttcctcctcaggggtgaagtc 396
|||||||||||| | ||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 628 ctcgaaggcccattcgttctccttgcggatctcctcctcctcctctggtgtgaagtc 572
Score = 48.1 bits (24), Expect = 0.009
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 677 ttgcagtactcgattaccttggataggatcttggagttgacgttaggaagagggatgccg 736
|||||||| |||| ||||||| |||| |||||| |||||| || ||||||| ||||
Sbjct: 336 ttgcagtagtcgagcaccttggcgaggacgttggaggcgacgttggggagagggacgccg 277
Query: 737 ttgtcggcgcagtcatcctcgatcatgt 764
|| || | |||||| |||||||||||||
Sbjct: 276 ttctccgtgcagtcgtcctcgatcatgt 249
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,475,728
Number of Sequences: 438736
Number of extensions: 1475728
Number of successful extensions: 17958
Number of sequences better than 0.5: 120
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16288
Number of HSP's gapped (non-prelim): 1639
length of query: 955
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 934
effective length of database: 2,791,206,460
effective search space: 2606986833640
effective search space used: 2606986833640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)