BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC O... 117 5e-024
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 117 5e-024
gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) c... 117 5e-024
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 117 5e-024
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 117 5e-024
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 117 5e-024
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 117 5e-024
gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (ja... 103 8e-020
dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA... 100 1e-018
dbj|AG206808.1| Oryza sativa (japonica cultivar-group) DNA,... 88 5e-015
gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (ja... 66 2e-008
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 56 2e-005
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 56 2e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 56 2e-005
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 56 2e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 42 0.24
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 42 0.24
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 42 0.24
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 42 0.24
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.24
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.24
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.24
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.24
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.24
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 133659
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 4787 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 4846
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 4847 aaatgcgctcgagactttaatagcattctgccaaa 4881
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 4452 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 4511
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 4512 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 4555
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 2031963 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 2031904
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 2031903 aaatgcgctcgagactttaatagcattctgccaaa 2031869
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 2032298 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 2032239
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 2032238 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 2032195
>gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025027, whole
genome shotgun sequence
Length = 109020
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 9105 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 9164
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 9165 aaatgcgctcgagactttaatagcattctgccaaa 9199
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 8770 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 8829
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 8830 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 8873
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118
genomic scaffold, whole genome shotgun sequence
Length = 3660441
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 852672 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 852613
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 852612 aaatgcgctcgagactttaatagcattctgccaaa 852578
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 853007 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 852948
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 852947 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 852904
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 16375777 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 16375718
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 16375717 aaatgcgctcgagactttaatagcattctgccaaa 16375683
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 16376112 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 16376053
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 16376052 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 16376009
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 19722206 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 19722147
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 19722146 aaatgcgctcgagactttaatagcattctgccaaa 19722112
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 19722541 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 19722482
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 19722481 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 19722438
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 117 bits (59), Expect = 5e-024
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 182 taccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagc 241
|||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||||
Sbjct: 19648420 taccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagc 19648361
Query: 242 aaaggcgcttgagactttagtagcattctgccaaa 276
||| ||||| ||||||||| |||||||||||||||
Sbjct: 19648360 aaatgcgctcgagactttaatagcattctgccaaa 19648326
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 19648755 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 19648696
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 19648695 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 19648652
>gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 687
Score = 103 bits (52), Expect = 8e-020
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 252 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 193
Query: 243 aaggcgcttgagactttagtagcattct 270
|| ||||| ||||||||| |||||||||
Sbjct: 192 aatgcgctcgagactttaatagcattct 165
Score = 83.8 bits (42), Expect = 7e-014
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 351 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 292
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||| ||||| ||||| ||||| || |||||
Sbjct: 291 ttgaagcagcttttgtgatacatggtgttattgacagt 254
>dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F09, full
insert sequence
Length = 488
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 86 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 27
Query: 243 aaggcgcttgagactttagtagcatt 268
|| ||||| ||||||||| |||||||
Sbjct: 26 aatgcgctcgagactttaatagcatt 1
Score = 83.8 bits (42), Expect = 7e-014
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 185 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 126
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||| ||||| ||||| ||||| || |||||
Sbjct: 125 ttgaagcagcttttgtgatacatggtgttattgacagt 88
>dbj|AG206808.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6021_0_701_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6021, genomic survey sequence
Length = 441
Score = 87.7 bits (44), Expect = 5e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
|||||||| ||||| || ||||| || || ||||| |||||||| |||||||| ||||||
Sbjct: 138 agcttcccttcgtgtgcgatgtaatttgaggggctaatggtgcatcctccatgacagcac 79
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagtgacctg 106
||||||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 78 ttgaagcagcttttgtgatacatggtgttattgacagtaacctg 35
>gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 404
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 222 catttctctctggtgccagcaaaggcgcttgagactttagtagcattct 270
||||||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 396 catttctctctcgtgccagcaaatgcgctcgagactttaatagcattct 348
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 476 tgcagcctccatgagagcacttgaagcagctcttgtggta 437
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 180 tggctgcacttgaagcaggtcttgtggtac 151
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 9216 tgcagcctccatgagagcacttgaagcagctcttgtggta 9177
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 8308 tggctgcacttgaagcaggtcttgtggtac 8279
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 412 tgcagcctccatgagagcacttgaagcagctcttgtggta 373
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 116 tggctgcacttgaagcaggtcttgtggtac 87
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 371515 tgcagcctccatgagagcacttgaagcagctcttgtggta 371554
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 372423 tggctgcacttgaagcaggtcttgtggtac 372452
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 4426715 tgcagcctccatgagagcacttgaagcagctcttgtggta 4426754
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 4427623 tggctgcacttgaagcaggtcttgtggtac 4427652
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 23570814 tgcagcctccatgagagcacttgaagcagctcttgtggta 23570853
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 23571722 tggctgcacttgaagcaggtcttgtggtac 23571751
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 34489 tgcagcctccatgagagcacttgaagcagctcttgtggta 34528
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 35397 tggctgcacttgaagcaggtcttgtggtac 35426
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 131817 tgcagcctccatgagagcacttgaagcagctcttgtggta 131856
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 132725 tggctgcacttgaagcaggtcttgtggtac 132754
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 43 tgcaccctccatggcagcacttgaagcagctcttgtggta 82
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 26594931 tgcagcctccatgagagcacttgaagcagctcttgtggta 26594970
Score = 44.1 bits (22), Expect = 0.062
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tggcagcacttgaagcagctcttgtggtac 83
|||| ||||||||||||| |||||||||||
Sbjct: 26595839 tggctgcacttgaagcaggtcttgtggtac 26595868
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 78952 agcacttgaagcaactcttgtggta 78928
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 5040 agcacttgaagcaactcttgtggta 5064
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 161110 agcacttgaagcaactcttgtggta 161134
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 77578 agcacttgaagcaactcttgtggta 77554
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 400 agcacttgaagcaactcttgtggta 376
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 923433 agcacttgaagcaactcttgtggta 923457
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 12118808 agcacttgaagcaactcttgtggta 12118832
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 25571872 agcacttgaagcaactcttgtggta 25571896
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 agcacttgaagcagctcttgtggta 82
||||||||||||| |||||||||||
Sbjct: 25758434 agcacttgaagcaactcttgtggta 25758458
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 596,133
Number of Sequences: 438736
Number of extensions: 596133
Number of successful extensions: 19070
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18648
Number of HSP's gapped (non-prelim): 422
length of query: 438
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 418
effective length of database: 2,791,645,196
effective search space: 1166907691928
effective search space used: 1166907691928
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)