BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738978.2.1
(572 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK062506.1| Oryza sativa (japonica cultivar-group) cDNA... 119 2e-024
gb|AC121490.2| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|AACV01005755.1| Oryza sativa (japonica cultivar-group) c... 119 2e-024
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 119 2e-024
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-024
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-024
dbj|AK063117.1| Oryza sativa (japonica cultivar-group) cDNA... 80 1e-012
gb|AACV01021900.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
ref|NM_197242.1| Oryza sativa (japonica cultivar-group) put... 80 1e-012
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 80 1e-012
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AC084023.8| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|AQ913570.1|AQ913570 nbeb0041P04r CUGI Rice BAC Library (... 72 4e-010
gb|AACV01021898.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|NM_197239.1| Oryza sativa (japonica cultivar-group) put... 64 9e-008
ref|NM_197241.1| Oryza sativa (japonica cultivar-group) put... 64 9e-008
dbj|AK063196.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
ref|NM_197249.1| Oryza sativa (japonica cultivar-group) put... 60 1e-006
gb|D23024.1|D23024 RICC2059A Rice callus Oryza sativa (japo... 58 5e-006
gb|C74001.1|C74001 C74001 Rice panicle shorter than 3cm Ory... 44 0.081
gb|AU029306.1|AU029306 AU029306 Rice panicle shorter than 3... 44 0.081
dbj|AK111438.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.081
dbj|AP005421.3| Oryza sativa (japonica cultivar-group) geno... 44 0.081
gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) c... 44 0.081
gb|AACV01019917.1| Oryza sativa (japonica cultivar-group) c... 44 0.081
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.081
ref|NM_192143.1| Oryza sativa (japonica cultivar-group), p... 44 0.081
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.081
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 44 0.081
dbj|AP003450.3| Oryza sativa (japonica cultivar-group) geno... 44 0.081
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.081
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.081
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.081
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.081
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.081
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.081
dbj|AK063205.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.32
dbj|AP004014.5| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP005419.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|AACV01010021.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01015111.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01020101.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
gb|AACV01026816.1| Oryza sativa (japonica cultivar-group) C... 42 0.32
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 42 0.32
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 42 0.32
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 42 0.32
gb|CH401609.1| Oryza sativa (japonica cultivar-group) scaff... 42 0.32
gb|CH401219.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromoso... 42 0.32
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
>dbj|AK062506.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B07, full
insert sequence
Length = 477
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 314 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 255
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 254 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 195
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 194 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 135
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0005F16, complete sequence
Length = 160053
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 16714 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 16773
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 16774 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 16833
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 16834 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 16893
>gb|AACV01005755.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005755, whole
genome shotgun sequence
Length = 39112
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 5822 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 5763
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 5762 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 5703
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 5702 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 5643
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 630831 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 630890
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 630891 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 630950
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 630951 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 631010
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 639581 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 639640
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 639641 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 639700
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 639701 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 639760
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 831943 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 832002
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 832003 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 832062
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 832063 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 832122
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 630831 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 630890
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 630891 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 630950
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 630951 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 631010
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 119 bits (60), Expect = 2e-024
Identities = 150/180 (83%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||| ||
Sbjct: 630833 gccgcaggaggagacggccttgcgggcgttggggctgttgacgtagcgcccgtagcgcgg 630892
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| |||||||||||||||| |||||||||||| ||| |||||||||||| |||
Sbjct: 630893 gtccttggcgaactggcagaagcagccctgctgcgcccgcaggctggagcagcacgccgc 630952
Query: 430 ggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttgca 489
| |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||||
Sbjct: 630953 cgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttgca 631012
>dbj|AK063117.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E03, full
insert sequence
Length = 485
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 298 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 239
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 238 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 179
>gb|AACV01021900.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021900, whole
genome shotgun sequence
Length = 13190
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 4072 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 4013
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 4012 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 3953
>ref|NM_197242.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
protein (OSJNBa0062C05.16), mRNA
Length = 306
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 282 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 223
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 222 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 163
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 709149 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 709090
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 709089 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 709030
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| | ||
Sbjct: 704624 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacattgg 704683
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 704684 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 704743
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 693053 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 693112
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 693113 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 693172
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 738354 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 738413
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 738414 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 738473
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 738474 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 738533
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 738534 cgccagctgcccggcgttgcac 738555
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 6836567 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 6836508
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 6836507 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 6836448
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 6823333 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 6823392
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 6823393 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 6823452
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 17702361 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 17702302
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 17702301 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 17702242
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 17689127 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 17689186
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 17689187 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 17689246
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 18787355 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 18787296
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 18787295 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 18787236
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| | ||
Sbjct: 18782830 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacattgg 18782889
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 18782890 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 18782949
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 18771259 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 18771318
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 18771319 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 18771378
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 18816160 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 18816219
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 18816220 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 18816279
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 18816280 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 18816339
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 18816340 cgccagctgcccggcgttgcac 18816361
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0062C05 map S21174S, complete sequence
Length = 178867
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 82776 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 82717
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 82716 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 82657
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| | ||
Sbjct: 78251 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacattgg 78310
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 78311 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 78370
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 66680 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 66739
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 66740 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 66799
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 113896 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 113955
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 113956 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 114015
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 114016 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 114075
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 114076 cgccagctgcccggcgttgcac 114097
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 79.8 bits (40), Expect = 1e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| || ||
Sbjct: 18798209 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacgtcgg 18798150
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || |||||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 18798149 gtctttcgcgtactggcagaagcacccctgctgtgctttcaggctagagcagcacgacgc 18798090
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| | ||
Sbjct: 18793684 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacattgg 18793743
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 18793744 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 18793803
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 18782113 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 18782172
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 18782173 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 18782232
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Plus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 18827414 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 18827473
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 18827474 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 18827533
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 18827534 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 18827593
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 18827594 cgccagctgcccggcgttgcac 18827615
>gb|AQ913570.1|AQ913570 nbeb0041P04r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0041P04r, DNA sequence
Length = 528
Score = 71.9 bits (36), Expect = 4e-010
Identities = 117/144 (81%)
Strand = Plus / Minus
Query: 346 gttgatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgc 405
||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||||||
Sbjct: 528 gttgacgtagcgcccgtagcgcgggtccttggcgaactggcagaagcagccctgctgcgc 469
Query: 406 cttgaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgca 465
| ||| |||||||||||| ||| | |||| ||| ||| ||| ||||||| || |||
Sbjct: 468 ccgcaggctggagcagcacgccgccgtcggccgcgccccgcccgcgatcgcccccgtgca 409
Query: 466 agccgccagctgcccggcgttgca 489
||| ||||||||| ||||||||
Sbjct: 408 caccgtcagctgcccagcgttgca 385
>gb|AACV01021898.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021898, whole
genome shotgun sequence
Length = 31199
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 2094 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 2035
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 2034 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 1975
>ref|NM_197239.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
protein (OSJNBa0062C05.14), mRNA
Length = 303
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| || |||| ||||||||||||| | |||| || ||
Sbjct: 279 gccgcaggcggcgatcatcttgcgtgcattggtgctgttgatgtaggacgcgtacgtcgg 220
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 219 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 160
>ref|NM_197241.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
protein (OSJNBa0062C05.15), mRNA
Length = 303
Score = 63.9 bits (32), Expect = 9e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgaccttgcgcgcgttggggctgttgatgtagcgcccgtaggtggg 369
|||||||| ||||| | |||||| ||||||| ||||||||||||| | |||| | ||
Sbjct: 279 gccgcaggcggcgatcatcttgcgtgcgttggtgctgttgatgtaggacgcgtacattgg 220
Query: 370 gttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
|| ||| || ||||||||||||||||||| || || || ||| | ||||||||||||||
Sbjct: 219 gtctttcgcgtactggcagaagcacccctgttgtgctttcaggctagagcagcacgacgc 160
>dbj|AK063196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C03, full
insert sequence
Length = 503
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Minus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 358 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 299
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 298 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 239
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 238 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 179
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 178 cgccagctgcccggcgttgcac 157
>ref|NM_197249.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
protein (OSJNBa0062C05.23), mRNA
Length = 276
Score = 60.0 bits (30), Expect = 1e-006
Identities = 159/202 (78%)
Strand = Plus / Minus
Query: 289 ctagcagcgcggcacggagacgccgcaggaggcgacgaccttgcgcgcgttggggctgtt 348
||||||||| || | || || ||||||||||| || | |||||| ||||||| ||||||
Sbjct: 276 ctagcagcgggggatggcgatgccgcaggaggtgagggtcttgcgggcgttggcgctgtt 217
Query: 349 gatgtagcgcccgtaggtggggttcttcacgaactggcagaagcacccctgctgcgcctt 408
||||||| |||| | ||||| | || ||||||||||||||||| ||||||
Sbjct: 216 gatgtaggaggcgtacgccgggttgcgcgcgtactggcagaagcaccccctctgcgcgcg 157
Query: 409 gaggttggagcagcacgacgcggagggcctcgcgccggccgtgatcgccggcgcgcaagc 468
|||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||
Sbjct: 156 caggttggagcagcacgacgccgacggcgtcgacccgccgatgatcgcgcccgcgcagat 97
Query: 469 cgccagctgcccggcgttgcac 490
||||||||||||||||||||||
Sbjct: 96 cgccagctgcccggcgttgcac 75
>gb|D23024.1|D23024 RICC2059A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2059_1A, mRNA sequence
Length = 362
Score = 58.0 bits (29), Expect = 5e-006
Identities = 146/182 (80%), Gaps = 3/182 (1%)
Strand = Plus / Minus
Query: 310 gccgcaggaggcgacgacctt-gcgcgcgttgggg-ctgttgatgtagcgcccgtaggtg 367
||||||||||| |||| |||| ||| |||||||| ||||||| |||||||||||||
Sbjct: 297 gccgcaggaggagacggcctttgcggncgttgggggctgttgacgtagcgcccgtagcgc 238
Query: 368 gggttcttcacgaactggcagaagcacccctgctgcgccttgaggttggagcagcacgac 427
|||| ||| |||| ||||||||||| |||| |||||| ||| |||||||||||| |
Sbjct: 237 gggtccttggcgaantggcagaagcagccct-ntgcgcccgcaggctggagcagcacgcc 179
Query: 428 gcggagggcctcgcgccggccgtgatcgccggcgcgcaagccgccagctgcccggcgttg 487
|| | |||| ||| ||| ||| ||||||| || ||| ||| ||||||||| ||||||
Sbjct: 178 gccgtcggccgcgccccgcccgcgatcgcccccgtgcacaccgtcagctgcccagcgttg 119
Query: 488 ca 489
||
Sbjct: 118 ca 117
>gb|C74001.1|C74001 C74001 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30132_1A, mRNA sequence
Length = 391
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 261 ctgcgccttgagcttggagcagcacg 236
>gb|AU029306.1|AU029306 AU029306 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30132_6Z, mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 258 ctgcgccttgagcttggagcagcacg 233
>dbj|AK111438.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A04, full
insert sequence
Length = 1587
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 984 ctgcgccttgagcttggagcagcacg 1009
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0435D08
Length = 148912
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 44240 ggccgccgccgtcgccagcacc 44219
>gb|AACV01002143.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002143, whole
genome shotgun sequence
Length = 64242
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 16940 ctgcgccttgagcttggagcagcacg 16965
>gb|AACV01019917.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019917, whole
genome shotgun sequence
Length = 13303
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 5179 ggccgccgccgtcgccagcacc 5158
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 28613025 ctgcgccttgagcttggagcagcacg 28613050
>ref|NM_192143.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 339
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 225 ctgcgccttgagcttggagcagcacg 200
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 3060408 ctgcgccttgagcttggagcagcacg 3060433
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 338549 ggccgccgccgtcgccagcacc 338528
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C09
Length = 170226
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 58794 ctgcgccttgagcttggagcagcacg 58819
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 3282316 ggccgccgccgtcgccagcacc 3282295
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 5774868 ccgacgccgactccgccgccgccgtcgcc 5774840
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 2998892 ctgcgccttgagcttggagcagcacg 2998917
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 12756127 ggccgccgccgtcgccagcacc 12756106
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 15248679 ccgacgccgactccgccgccgccgtcgcc 15248651
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 28200613 ctgcgccttgagcttggagcagcacg 28200638
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.081
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 400 ctgcgccttgaggttggagcagcacg 425
|||||||||||| |||||||||||||
Sbjct: 28532355 ctgcgccttgagcttggagcagcacg 28532380
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 44.1 bits (22), Expect = 0.081
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 511 ggccgccgccgtcgccagcacc 532
||||||||||||||||||||||
Sbjct: 13890563 ggccgccgccgtcgccagcacc 13890542
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 16454141 ccgacgccgactccgccgccgccgtcgcc 16454113
>dbj|AK063205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C12, full
insert sequence
Length = 966
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 15 ccgacgccgactccgccgccgccgtcgcc 43
>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1606_D04
Length = 92729
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 512 gccgccgccgtcgccagcaccacca 536
|||||||||||||||||||| ||||
Sbjct: 72912 gccgccgccgtcgccagcactacca 72936
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0046G12
Length = 189391
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 142688 ccgacgccgactccgccgccgccgtcgcc 142660
>gb|AACV01010021.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010021, whole
genome shotgun sequence
Length = 11265
Score = 42.1 bits (21), Expect = 0.32
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 494 gccgccgacgccgtctcggccgccgccgtcgcc 526
||||||| ||||||| | |||||||||||||||
Sbjct: 7219 gccgccgccgccgtcgccgccgccgccgtcgcc 7251
>gb|AACV01015111.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015111, whole
genome shotgun sequence
Length = 24672
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 512 gccgccgccgtcgccagcaccacca 536
|||||||||||||||||||| ||||
Sbjct: 7966 gccgccgccgtcgccagcactacca 7942
>gb|AACV01020101.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020101, whole
genome shotgun sequence
Length = 18249
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 8570 ccgacgccgactccgccgccgccgtcgcc 8542
>gb|AACV01026816.1| Oryza sativa (japonica cultivar-group) Ctg026816, whole genome
shotgun sequence
Length = 4312
Score = 42.1 bits (21), Expect = 0.32
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 525 ccagcaccaccagcactaccagcgc 549
|||||||||||||||| ||||||||
Sbjct: 2604 ccagcaccaccagcaccaccagcgc 2580
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 42.1 bits (21), Expect = 0.32
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 494 gccgccgacgccgtctcggccgccgccgtcgcc 526
||||||| ||||||| | |||||||||||||||
Sbjct: 2034000 gccgccgccgccgtcgccgccgccgccgtcgcc 2033968
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 42.1 bits (21), Expect = 0.32
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 498 ccgacgccgtctcggccgccgccgtcgcc 526
||||||||| ||| |||||||||||||||
Sbjct: 2145944 ccgacgccgactccgccgccgccgtcgcc 2145916
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,024,342
Number of Sequences: 438736
Number of extensions: 1024342
Number of successful extensions: 51821
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49143
Number of HSP's gapped (non-prelim): 2658
length of query: 572
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 551
effective length of database: 2,791,206,460
effective search space: 1537954759460
effective search space used: 1537954759460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)