BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB642739.1|CB642739 OSJNEb03B08.r OSJNEb Oryza sativa (j... 464 e-128
gb|CB660127.1|CB660127 OSJNEd01K01.r OSJNEd Oryza sativa (j... 464 e-128
gb|CB664962.1|CB664962 OSJNEd10P20.r OSJNEd Oryza sativa (j... 464 e-128
gb|CF307421.1|CF307421 HDA1--06-K11.g1 OsHDAC1-overexpressi... 464 e-128
dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA... 464 e-128
dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA... 464 e-128
dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-... 464 e-128
gb|CF303521.1|CF303521 ABF1--02-I02.g1 ABF3-overexpressing ... 456 e-126
gb|AU096287.1|AU096287 AU096287 Rice green shoot Oryza sati... 365 2e-098
gb|CF308846.1|CF308846 ABF--02-N03.g1 ABF3-overexpressing t... 353 8e-095
gb|CF332759.1|CF332759 JMT--01-G05.b1 AtJMT-overexpressing ... 339 1e-090
gb|AU096607.1|AU096607 AU096607 Rice green shoot Oryza sati... 329 1e-087
gb|AU108217.1|AU108217 AU108217 Rice callus Oryza sativa (j... 325 2e-086
gb|AU030580.1|AU030580 AU030580 Rice cDNA from immature lea... 319 1e-084
gb|AU029979.1|AU029979 AU029979 Rice cDNA from immature lea... 317 5e-084
gb|D48945.1|D48945 RICS15532A Rice green shoot Oryza sativa... 313 7e-083
gb|D15424.2|D15424 RICC0614A Rice callus Oryza sativa (japo... 311 3e-082
gb|AU030849.1|AU030849 AU030849 Rice cDNA from immature lea... 309 1e-081
gb|AU182843.1|AU182843 AU182843 Rice panicle shorter than 3... 297 4e-078
gb|AU030579.1|AU030579 AU030579 Rice cDNA from immature lea... 295 2e-077
gb|AU065523.1|AU065523 AU065523 Rice callus Oryza sativa (j... 274 6e-071
gb|AU101050.1|AU101050 AU101050 Rice callus Oryza sativa (j... 252 2e-064
gb|AU183993.1|AU183993 AU183993 Rice root Oryza sativa (jap... 250 9e-064
gb|AU029488.1|AU029488 AU029488 Rice panicle shorter than 3... 198 3e-048
dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA... 194 5e-047
gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbar... 186 1e-044
gb|AACV01006334.1| Oryza sativa (japonica cultivar-group) c... 186 1e-044
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 186 1e-044
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
gb|CB664961.1|CB664961 OSJNEd10P20.f OSJNEd Oryza sativa (j... 180 7e-043
gb|C25185.1|C25185 C25185 Rice shoot Oryza sativa (japonica... 170 7e-040
gb|CV727476.1|CV727476 14Salt--05-K06.g1 Salt treated rice ... 170 7e-040
gb|AU095242.1|AU095242 AU095242 Rice cDNA from immature lea... 168 3e-039
gb|AU162886.1|AU162886 AU162886 Rice green shoot Oryza sati... 168 3e-039
gb|AU173335.1|AU173335 AU173335 Rice root Oryza sativa (jap... 168 3e-039
gb|AU184295.1|AU184295 AU184295 Rice root Oryza sativa (jap... 168 3e-039
gb|CF308845.1|CF308845 ABF--02-N03.b1 ABF3-overexpressing t... 168 3e-039
gb|AU184747.1|AU184747 AU184747 Rice root Oryza sativa (jap... 167 1e-038
gb|AU184324.1|AU184324 AU184324 Rice root Oryza sativa (jap... 165 4e-038
gb|AU163000.1|AU163000 AU163000 Rice green shoot Oryza sati... 155 4e-035
gb|AU184684.1|AU184684 AU184684 Rice root Oryza sativa (jap... 155 4e-035
gb|CV720735.1|CV720735 YBH--01-K14.b1 Rice before heading y... 153 2e-034
gb|AU184606.1|AU184606 AU184606 Rice root Oryza sativa (jap... 151 6e-034
gb|AU197932.1|AU197932 AU197932 Rice green shoot Oryza sati... 151 6e-034
gb|CA999243.1|CA999243 S234P_C09 Rice cold stress germinati... 147 1e-032
gb|AU164500.1|AU164500 AU164500 Rice root Oryza sativa (jap... 141 6e-031
gb|CF303667.1|CF303667 ABF1--02-O09.g1 ABF3-overexpressing ... 139 2e-030
gb|CB664921.1|CB664921 OSJNEd10O20.f OSJNEd Oryza sativa (j... 131 6e-028
gb|AU183994.1|AU183994 AU183994 Rice root Oryza sativa (jap... 125 4e-026
gb|AU091399.1|AU091399 AU091399 Rice immature leaf includin... 123 1e-025
gb|CV721149.1|CV721149 YBH--03-A24.b1 Rice before heading y... 96 3e-017
gb|AU162879.1|AU162879 AU162879 Rice green shoot Oryza sati... 80 2e-012
gb|CF280737.1|CF280737 14ETL--07-I11.b1 Rice etiolated leaf... 80 2e-012
gb|AU165622.1|AU165622 AU165622 Rice panicle at flowering s... 58 7e-006
gb|CB000697.1|CB000697 S345J_B09 Rice cold stress germinati... 50 0.002
gb|CB656571.1|CB656571 OSJNEc11B09.r OSJNEc Oryza sativa (j... 50 0.002
gb|CF323882.1|CF323882 HDN--05-A09.g1 OsHDAC1-overexpressin... 50 0.002
gb|CF325111.1|CF325111 JMT1--02-F16.g1 AtJMT-overexpressing... 50 0.002
gb|CF329356.1|CF329356 NACL--04-K12.b1 Rice callus plasmid ... 50 0.002
gb|CF329357.1|CF329357 NACL--04-K12.g1 Rice callus plasmid ... 50 0.002
dbj|AK069181.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK104675.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AB079063.2| Oryza sativa (japonica cultivar-group) UXS-... 50 0.002
gb|AACV01002640.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NM_190499.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003271.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CB653220.1|CB653220 OSJNEc04A21.f OSJNEc Oryza sativa (j... 44 0.10
gb|CB653221.1|CB653221 OSJNEc04A21.r OSJNEc Oryza sativa (j... 44 0.10
gb|CB674716.1|CB674716 OSJNEe09O17.r OSJNEe Oryza sativa (j... 44 0.10
gb|CF311240.1|CF311240 ABF--06-G05.b1 ABF3-overexpressing t... 44 0.10
gb|AF251077.1|AF251077 Oryza sativa dTDP-glucose 4-6-dehydr... 44 0.10
dbj|AK061857.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
dbj|AK101168.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
dbj|AP003535.2| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01000881.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
dbj|AB167396.1| Oryza sativa (japonica cultivar-group) UXS-... 44 0.10
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
>gb|CB642739.1|CB642739 OSJNEb03B08.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03B08 3', mRNA sequence
Length = 879
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 759 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 701
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 700 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 641
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 640 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 582
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 522
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 521 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 462
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 461 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 402
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 352
>gb|CB660127.1|CB660127 OSJNEd01K01.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01K01 3', mRNA sequence
Length = 835
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 727 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 669
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 668 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 609
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 608 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 550
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 490
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 489 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 430
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 429 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 370
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 369 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 320
>gb|CB664962.1|CB664962 OSJNEd10P20.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd10P20 3', mRNA sequence
Length = 847
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 725 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 667
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 666 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 607
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 606 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 548
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 488
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 487 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 428
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 427 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 368
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 367 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 318
>gb|CF307421.1|CF307421 HDA1--06-K11.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-K11, mRNA sequence
Length = 571
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 164 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 222
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 223 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 282
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 283 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 341
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 401
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 402 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 461
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 462 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 521
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 522 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 571
>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
insert sequence
Length = 1411
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 717 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 775
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 776 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 835
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 836 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 894
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 954
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 955 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 1014
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 1015 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 1074
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1075 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 1124
>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
insert sequence
Length = 1811
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 1106 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 1164
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 1165 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 1224
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 1225 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 1283
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 1343
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 1344 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 1403
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 1404 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 1463
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1464 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 1513
>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic
acid decarboxylase, complete cds
Length = 1053
Score = 464 bits (234), Expect = e-128
Identities = 368/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 618 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 676
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 677 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 736
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 737 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 795
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 855
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 856 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 915
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 916 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 975
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 976 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 1025
>gb|CF303521.1|CF303521 ABF1--02-I02.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-I02, mRNA sequence
Length = 611
Score = 456 bits (230), Expect = e-126
Identities = 367/410 (89%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 57 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 115
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| || | |||||||||||| |||||||| |
Sbjct: 116 ctcaggccgtacgtggcgagcccctgactgttcataagccaggaacacaaactaggagct 175
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 176 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 234
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 294
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 295 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 354
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 355 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 414
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 415 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 464
>gb|AU096287.1|AU096287 AU096287 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13333, mRNA sequence
Length = 692
Score = 365 bits (184), Expect = 2e-098
Identities = 296/331 (89%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 81 cccctgactgtccagaggccaggaacacagactaggagttttctgcta-tgttgccgata 139
||| ||||||| |||| |||||||||||| |||||||| || |||||| |||||| || |
Sbjct: 38 cccntgactgttcagaagccaggaacacaaactaggagctt-ctgctaatgttgctgaca 96
Query: 140 tggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggga 199
||||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| |
Sbjct: 97 tggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaa 156
Query: 200 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccag 216
Query: 260 atgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggaca 319
| || || || || ||||| ||||||||||||||||| || || ||||||||||| ||||
Sbjct: 217 aggttaccgtcacaatgactgagaacactcctgatgatcctcgtcagaggaagccagaca 276
Query: 320 tcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttgg 379
| |||||||| ||||||||| |||| ||||||||||||||||| ||||| || |||||||
Sbjct: 277 ttacaaaggcaaaggaagttttggggtgggagcccaagatcgttctgcgtgatggcttgg 336
Query: 380 tgctcatggaggatgatttccgggagcgcct 410
|||||||||| ||||||||||||||||||||
Sbjct: 337 tgctcatggaagatgatttccgggagcgcct 367
>gb|CF308846.1|CF308846 ABF--02-N03.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-N03, mRNA sequence
Length = 603
Score = 353 bits (178), Expect = 8e-095
Identities = 262/290 (90%)
Strand = Plus / Minus
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
|||||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 600 ttctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 541
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 540 ggaccaattaatttgggaaacccaggtgaattcaccatgccggaacttgctgagaatgtg 481
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| |||
Sbjct: 480 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatccc 421
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 420 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 361
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 360 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 311
>gb|CF332759.1|CF332759 JMT--01-G05.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--01-G05, mRNA sequence
Length = 607
Score = 339 bits (171), Expect = 1e-090
Identities = 262/291 (90%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
|||||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 601 ttctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 542
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 482
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacact-cctgatgaccc 299
|||||||||||||||||||| || || || || ||||| ||||||||| |||||||| ||
Sbjct: 481 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactccctgatgatcc 422
Query: 300 ccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagat 359
|| ||||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||
Sbjct: 421 tcgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagat 362
Query: 360 cgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 cgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 311
>gb|AU096607.1|AU096607 AU096607 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14432, mRNA sequence
Length = 710
Score = 329 bits (166), Expect = 1e-087
Identities = 244/270 (90%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 120 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 179
Query: 201 cccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccaga 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaacccaga 239
Query: 261 tgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggacat 320
|| || || || ||||| ||||||||||||||||| || || ||||||||||| |||||
Sbjct: 240 ggttaccgtcacaatgactgagaacactcctgatgatcctcgtcagaggaagccagacat 299
Query: 321 cacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggt 380
|||||||| ||||||||| |||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 300 tacaaaggcaaaggaagttttggggtgggagcccaagatcgttctgcgtgatggcttggt 359
Query: 381 gctcatggaggatgatttccgggagcgcct 410
||||||||| ||||||||||||||||||||
Sbjct: 360 gctcatggaagatgatttccgggagcgcct 389
>gb|AU108217.1|AU108217 AU108217 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11756, mRNA sequence
Length = 624
Score = 325 bits (164), Expect = 2e-086
Identities = 260/291 (89%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaa-gctgatgaatggaaacaagac 179
|||||||||||| | | |||||| ||||||||||||| ||||||||| || |||| ||
Sbjct: 32 ttctgctatgttcctnacatggttaatggtcttattaaagctgatgaacggggacaacac 91
Query: 180 tggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgt 239
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgt 151
Query: 240 gaaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgaccc 299
||||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 152 gaaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcc 211
Query: 300 ccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagat 359
|| ||||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||
Sbjct: 212 tcgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagat 271
Query: 360 cgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 272 cgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 322
>gb|AU030580.1|AU030580 AU030580 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51265_2Z, mRNA sequence
Length = 703
Score = 319 bits (161), Expect = 1e-084
Identities = 257/290 (88%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
|||||||||||| | | |||||| ||| |||||||||||||||||| || |||| |||
Sbjct: 98 ttctgctatgttcctnacatggttaatgntcttattaagctgatgaacggggacaacact 157
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
|| || ||||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ggcccaattaatttgggaancccaggtgaattcaccatgctggaacttgctgagaatgtg 217
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
|||||||||||||||||||| || || || || ||||| ||||||||||||||||| ||
Sbjct: 218 aaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcct 277
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatc 360
|| ||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 278 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatc 337
Query: 361 gtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 gttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 387
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 24 acattgatgatggccgtgttgctagcaacttcat 57
||||||||||||||||| ||| ||| ||||||||
Sbjct: 1 acattgatgatggccgttttgttagtaacttcat 34
>gb|AU029979.1|AU029979 AU029979 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50429_1A, mRNA sequence
Length = 442
Score = 317 bits (160), Expect = 5e-084
Identities = 245/272 (90%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 139 atggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttgggg 198
|||||| |||||||||||||||||||||| || |||| |||||||| ||||| |||||
Sbjct: 4 atggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttggga 63
Query: 199 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaaccca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggagttgatcaaccca 123
Query: 259 gatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagaggaagccggac 318
|| || || || || ||||| ||||||||||||||||| || || |||| |||||| |||
Sbjct: 124 gaggttaccgtcacaatgactgagaacactcctgatgatcctcgtcaga-gaagccagac 182
Query: 319 atcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggcttg 378
|| |||||||| ||||||||| |||| ||||||||||||||||| ||||| || ||||||
Sbjct: 183 attacaaaggcaaaggaagttttggggtgggagcccaagatcgttctgcgtgatggcttg 242
Query: 379 gtgctcatggaggatgatttccgggagcgcct 410
||||||||||| ||||||||||||||||||||
Sbjct: 243 gtgctcatggaagatgatttccgggagcgcct 274
>gb|D48945.1|D48945 RICS15532A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 454
Score = 313 bits (158), Expect = 7e-083
Identities = 265/297 (89%), Gaps = 3/297 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 114 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 172
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 173 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 232
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 233 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 291
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctgagaatgtg 351
Query: 241 aa-ggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatga 296
|| |||||||||||||||||| || || || || ||||| ||||||||||||||||
Sbjct: 352 aagggagttgatcaacccagaggttaccgtcacaatgactnagaacactcctgatga 408
>gb|D15424.2|D15424 RICC0614A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0614, mRNA sequence
Length = 516
Score = 311 bits (157), Expect = 3e-082
Identities = 232/257 (90%)
Strand = Plus / Plus
Query: 154 attaagctgatgaatggaaacaagactggaccgattaacttggggaacccaggtgaattc 213
|||||||||||||| || |||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 1 attaagctgatgaacggggacaacactggaccaattaatttgggaaacccaggtgaattc 60
Query: 214 accatgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgacg 273
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct: 61 accatgctggaacttgctgagaatgtgaaggagttgatcaacccagaggttaccgtcaca 120
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 121 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaag 180
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 181 gaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagat 240
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 241 gatttccgggagcgcct 257
>gb|AU030849.1|AU030849 AU030849 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60343_2Z, mRNA sequence
Length = 687
Score = 309 bits (156), Expect = 1e-081
Identities = 294/334 (88%), Gaps = 5/334 (1%)
Strand = Plus / Plus
Query: 81 cccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccgatat 140
||||||||| | |||| ||||||||| || |||||||| || |||||||||||| || ||
Sbjct: 45 cccctgactnttcagaagccaggaacncaaactaggagctt-ctgctatgttgctgacat 103
Query: 141 ggttgatggtcttattaagctgatg-aatggaaacaag-actggaccgattaacttgggg 198
|||| |||||||||||||||||||| || || |||| ||||| || ||||| |||||
Sbjct: 104 ggttaatggtcttattaagctgatggaacggggacaaccactggcccaattaatttggga 163
Query: 199 aacccaggtgaattc-accatgctggaacttgctgagaatgtgaaggagttgatcaaccc 257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aacccaggtgaattccaccatgctggaacttgctgagaatgtgaaggagttgatcaaccc 223
Query: 258 agatgtgacagtgacgatgaccg-agaacactcctgatgacccccgccagaggaagccgg 316
||| || || || || ||||| | |||||||||||||||| || || ||||||||||| |
Sbjct: 224 agaggttaccgtcacaatgactggagaacactcctgatgatcctcgtcagaggaagccag 283
Query: 317 acatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcgggacggct 376
|||| |||||||| ||||||||| |||| ||||||||||||||||| ||||| || ||||
Sbjct: 284 acattacaaaggcaaaggaagttttggggtgggagcccaagatcgttctgcgtgatggct 343
Query: 377 tggtgctcatggaggatgatttccgggagcgcct 410
||||||||||||| ||||||||||||||||||||
Sbjct: 344 tggtgctcatggaagatgatttccgggagcgcct 377
>gb|AU182843.1|AU182843 AU182843 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31577, mRNA sequence
Length = 444
Score = 297 bits (150), Expect = 4e-078
Identities = 216/238 (90%)
Strand = Plus / Plus
Query: 173 acaagactggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctg 232
|||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4 acaacactggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctg 63
Query: 233 agaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctg 292
|||||||||||||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct: 64 agaatgtgaaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctg 123
Query: 293 atgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagc 352
|||| || || ||||||||||| ||||| |||||||| ||||||||| |||| |||||||
Sbjct: 124 atgatcctcgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagc 183
Query: 353 ccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 184 ccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 241
>gb|AU030579.1|AU030579 AU030579 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E51265_1A, mRNA sequence
Length = 424
Score = 295 bits (149), Expect = 2e-077
Identities = 235/260 (90%), Gaps = 3/260 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 152 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 210
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| |||||||| |
Sbjct: 211 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagct 270
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
| |||||||||||| || |||||| |||||||||||||||||||||| || |||| |||
Sbjct: 271 t-ctgctatgttgctgacatggttaatggtcttattaagctgatgaacggggacaacact 329
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 ggaccaattaatttggg-aacccaggtgaattcaccatgctggnacttgctgagaatgtg 388
Query: 241 aaggagttgatcaacccaga 260
||||||||||||||||||||
Sbjct: 389 aaggagttgatcaacccaga 408
>gb|AU065523.1|AU065523 AU065523 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1396_11A, mRNA sequence
Length = 414
Score = 274 bits (138), Expect = 6e-071
Identities = 214/238 (89%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 173 acaagactggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctg 232
|||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6 acaacactggaccaattaatttgggaaacccaggtgaattcaccatgctggaacttgctg 65
Query: 233 agaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctg 292
|||||||||||||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct: 66 agaatgtgaaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctg 125
Query: 293 atgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagc 352
|||| || || |||| |||||| || || |||||||| ||||||||| |||| |||||||
Sbjct: 126 atgatcctcgtcaga-gaagccagatattacaaaggcaaaggaagttttggggtgggagc 184
Query: 353 ccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 185 ccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 242
>gb|AU101050.1|AU101050 AU101050 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1396, mRNA sequence
Length = 644
Score = 252 bits (127), Expect = 2e-064
Identities = 211/238 (88%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 173 acaagactggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctg 232
|||| ||||| || ||||| ||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 67 acaacactggcccaattaatttgggaaccccaggtga-ttcaccatgctggaacttgctg 125
Query: 233 agaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctg 292
||||||||||||| |||||||||||||| || || || || ||||| |||||||||||||
Sbjct: 126 agaatgtgaagganttgatcaacccagaggttaccgtcacaatgactgagaacactcctg 185
Query: 293 atgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagc 352
|||| || || ||||||||||| || || |||||||| ||||||||| |||| |||||||
Sbjct: 186 atgatcctcgtcagaggaagccagatattacaaaggcaaaggaagttttggggtgggagc 245
Query: 353 ccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 246 ccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 303
>gb|AU183993.1|AU183993 AU183993 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0336, mRNA sequence
Length = 447
Score = 250 bits (126), Expect = 9e-064
Identities = 180/198 (90%)
Strand = Plus / Plus
Query: 213 caccatgctggaacttgctgagaatgtgaaggagttgatcaacccagatgtgacagtgac 272
|||||||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct: 1 caccatgctggaacttgctgagaatgtgaaggagttgatcaacccagaggttaccgtcac 60
Query: 273 gatgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaa 332
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| ||
Sbjct: 61 aatgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaa 120
Query: 333 ggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggagga 392
||||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 121 ggaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaaga 180
Query: 393 tgatttccgggagcgcct 410
||||||||||||||||||
Sbjct: 181 tgatttccgggagcgcct 198
>gb|AU029488.1|AU029488 AU029488 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31003_8Z, mRNA sequence
Length = 631
Score = 198 bits (100), Expect = 3e-048
Identities = 252/291 (86%), Gaps = 9/291 (3%)
Strand = Plus / Plus
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaatggaaacaagact 180
|||||||||||||| || ||||| |||||||||||||||||||||| || |||| | |
Sbjct: 45 ttctgctatgttgctgac-tggtt-atggtcttattaagctgatgaacggggacaaca-t 101
Query: 181 ggaccgattaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtg 240
||||| ||||| ||||| | ||||| ||||||| | |||||||||||||||||| ||||
Sbjct: 102 ggacc-attaatttgggaaccccag-tgaattccncctgctggaacttgctgaga-tgtg 158
Query: 241 aaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccc 300
||||||||||||| |||||| || || || || |||| ||||||||||||||||| ||
Sbjct: 159 aaggagttgatcaccccagaggttaccgtcac-atgat-gagaacactcctgatgatcct 216
Query: 301 cgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagccc-aagat 359
|| ||||||||||| ||||| |||||||| ||||||||| |||| ||||||||| |||||
Sbjct: 217 cgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgggagccccaagat 276
Query: 360 cgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 277 cgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 327
>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
insert sequence
Length = 472
Score = 194 bits (98), Expect = 5e-047
Identities = 158/178 (88%)
Strand = Plus / Plus
Query: 233 agaatgtgaaggagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctg 292
|||||||||||||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct: 1 agaatgtgaaggagttgatcaacccagaggttaccgtcacaatgactgagaacactcctg 60
Query: 293 atgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagc 352
|||| || || ||||||||||| ||||| |||||||| ||||| ||| |||| |||||||
Sbjct: 61 atgatcctcgtcagaggaagccagacattacaaaggcaaaggaggttttggggtgggagc 120
Query: 353 ccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
||| |||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 ccaggatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 178
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0002D01, from chromosome 3, complete sequence
Length = 187589
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 109498 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 109557
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 109558 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 109617
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 109618 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 109663
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109373 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 109415
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 108868 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 108926
Query: 61 ctcaggc 67
|||||||
Sbjct: 108927 ctcaggc 108933
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 109185 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 109244
Query: 201 cccaggt 207
|||||||
Sbjct: 109245 cccaggt 109251
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 109028 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 109086
Query: 138 tatggtt 144
||||||
Sbjct: 109087 catggtt 109093
>gb|AACV01006334.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006334, whole
genome shotgun sequence
Length = 13714
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Minus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 5288 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 5229
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 5228 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 5169
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 5168 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 5123
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 5918 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 5860
Query: 61 ctcaggc 67
|||||||
Sbjct: 5859 ctcaggc 5853
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 5371
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 5758 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 5700
Query: 138 tatggtt 144
||||||
Sbjct: 5699 catggtt 5693
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 5601 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 5542
Query: 201 cccaggt 207
|||||||
Sbjct: 5541 cccaggt 5535
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 756035 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 756094
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 756095 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 756154
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 756155 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 756200
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755910 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 755952
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 755405 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 755463
Query: 61 ctcaggc 67
|||||||
Sbjct: 755464 ctcaggc 755470
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 755722 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 755781
Query: 201 cccaggt 207
|||||||
Sbjct: 755782 cccaggt 755788
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 755565 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 755623
Query: 138 tatggtt 144
||||||
Sbjct: 755624 catggtt 755630
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 9398192 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 9398251
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 9398252 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 9398311
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 9398312 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 9398357
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398067 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 9398109
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 9397562 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 9397620
Query: 61 ctcaggc 67
|||||||
Sbjct: 9397621 ctcaggc 9397627
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 9397879 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 9397938
Query: 201 cccaggt 207
|||||||
Sbjct: 9397939 cccaggt 9397945
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 9397722 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 9397780
Query: 138 tatggtt 144
||||||
Sbjct: 9397781 catggtt 9397787
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 9590554 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 9590613
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 9590614 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 9590673
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 9590674 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 9590719
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9590429 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 9590471
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 9589924 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 9589982
Query: 61 ctcaggc 67
|||||||
Sbjct: 9589983 ctcaggc 9589989
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 9590241 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 9590300
Query: 201 cccaggt 207
|||||||
Sbjct: 9590301 cccaggt 9590307
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 9590084 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 9590142
Query: 138 tatggtt 144
||||||
Sbjct: 9590143 catggtt 9590149
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 9410219 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 9410278
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 9410279 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 9410338
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 9410339 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 9410384
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410094 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 9410136
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 9409589 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 9409647
Query: 61 ctcaggc 67
|||||||
Sbjct: 9409648 ctcaggc 9409654
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 9409906 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 9409965
Query: 201 cccaggt 207
|||||||
Sbjct: 9409966 cccaggt 9409972
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 9409749 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 9409807
Query: 138 tatggtt 144
||||||
Sbjct: 9409808 catggtt 9409814
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 186 bits (94), Expect = 1e-044
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 245 agttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgcc 304
|||||||||||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct: 9412098 agttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtc 9412157
Query: 305 agaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcc 364
|||||||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| |
Sbjct: 9412158 agaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttc 9412217
Query: 365 tgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 9412218 tgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 9412263
Score = 85.7 bits (43), Expect = 3e-014
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 204 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411973 aggtgaattcaccatgctggaacttgctgagaatgtgaaggag 9412015
Score = 85.7 bits (43), Expect = 3e-014
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 9411468 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 9411526
Query: 61 ctcaggc 67
|||||||
Sbjct: 9411527 ctcaggc 9411533
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 141 ggttgatggtcttattaagctgatgaatggaaacaagactggaccgattaacttggggaa 200
|||| |||||||||||||||||||||| || |||| |||||||| ||||| ||||| ||
Sbjct: 9411785 ggttaatggtcttattaagctgatgaacggggacaacactggaccaattaatttgggaaa 9411844
Query: 201 cccaggt 207
|||||||
Sbjct: 9411845 cccaggt 9411851
Score = 69.9 bits (35), Expect = 2e-009
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 78 gagcccctgactgtccagaggccaggaacacagactaggagttttctgctatgttgccga 137
|||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||
Sbjct: 9411628 gagcccctgactgttcagaagccaggaacacaaactaggag-cttctgctatgttgctga 9411686
Query: 138 tatggtt 144
||||||
Sbjct: 9411687 catggtt 9411693
>gb|CB664961.1|CB664961 OSJNEd10P20.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd10P20 5', mRNA sequence
Length = 860
Score = 180 bits (91), Expect = 7e-043
Identities = 150/167 (89%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 696 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 754
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 755 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggag-c 813
Query: 121 ttctgctatgttgccgatatggttgatggtcttattaagctgatgaa 167
|||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 814 ttctgctatgttgctgacatggttaatggtcttattaagctgatgaa 860
>gb|C25185.1|C25185 C25185 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5536_2A, mRNA sequence
Length = 287
Score = 170 bits (86), Expect = 7e-040
Identities = 144/164 (87%)
Strand = Plus / Plus
Query: 244 gagttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgc 303
||||||||||||||||| || || || || ||||| ||||||||||||||||| || ||
Sbjct: 1 gagttgatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgt 60
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtc 363
||||| | ||| ||||| |||||||| ||||||||| |||| |||||||||||||||||
Sbjct: 61 cagagaangccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgtt 120
Query: 364 ctgcgggacggcttggtgctcatggaggatgatttccgggagcg 407
||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 121 ctgcgngatggcttggtgctcatggaagatgatttccgggagcg 164
>gb|CV727476.1|CV727476 14Salt--05-K06.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-K06, mRNA sequence
Length = 493
Score = 170 bits (86), Expect = 7e-040
Identities = 143/162 (88%)
Strand = Plus / Minus
Query: 249 gatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgccagag 308
|||||||||||| || || || || ||||| ||||||||||||||||| || || |||||
Sbjct: 493 gatcaacccagaggttaccgtcacaatgactgagaacactcctgatgatcctcgtcagag 434
Query: 309 gaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctgcg 368
|||||| ||||| |||||||| ||||||||| |||| ||||||||||||||||| ||||
Sbjct: 433 gaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgttttgcg 374
Query: 369 ggacggcttggtgctcatggaggatgatttccgggagcgcct 410
|| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 tgatggcttggtgctcatggaagatgatttccgggagcgcct 332
>gb|AU095242.1|AU095242 AU095242 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60904, mRNA sequence
Length = 448
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 8 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaag 67
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 68 gaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagat 127
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 128 gatttccgggagcgcct 144
>gb|AU162886.1|AU162886 AU162886 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12645, mRNA sequence
Length = 463
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 2 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaag 61
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 62 gaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagat 121
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 122 gatttccgggagcgcct 138
>gb|AU173335.1|AU173335 AU173335 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2220, mRNA sequence
Length = 456
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 4 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaag 63
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 64 gaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagat 123
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 124 gatttccgggagcgcct 140
>gb|AU184295.1|AU184295 AU184295 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1874, mRNA sequence
Length = 449
Score = 168 bits (85), Expect = 3e-039
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| |||
Sbjct: 2 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaag 61
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct: 62 gaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagat 121
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 122 gatttccgggagcgcct 138
>gb|CF308845.1|CF308845 ABF--02-N03.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-N03, mRNA sequence
Length = 600
Score = 168 bits (85), Expect = 3e-039
Identities = 150/168 (89%), Gaps = 3/168 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatgg-ccgtgttgctagcaacttcatct 59
|||||||||||| ||||||||||||||||||||||| | |||||| ||| |||||||| |
Sbjct: 434 caacacctatggacctaggatgaacattgatgatgggcngtgttgttagtaacttcat-t 492
Query: 60 gctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagt 119
|||||||| || || || |||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 493 gctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggagc 552
Query: 120 tttctgctatgttgccgatatggttgatggtcttattaagctgatgaa 167
|| |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 553 tt-ctgctatgttgctgacatggttaatggtcttattaagctgatgaa 599
>gb|AU184747.1|AU184747 AU184747 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3755, mRNA sequence
Length = 450
Score = 167 bits (84), Expect = 1e-038
Identities = 123/136 (90%)
Strand = Plus / Plus
Query: 275 tgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaagg 334
|||| ||||||||||||||||| || || ||||||||||| ||||| |||||||| ||||
Sbjct: 1 tgactgagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaagg 60
Query: 335 aagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatg 394
||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct: 61 aagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagatg 120
Query: 395 atttccgggagcgcct 410
||||||||||||||||
Sbjct: 121 atttccgggagcgcct 136
>gb|AU184324.1|AU184324 AU184324 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1949, mRNA sequence
Length = 444
Score = 165 bits (83), Expect = 4e-038
Identities = 119/131 (90%)
Strand = Plus / Plus
Query: 280 gagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagtt 339
||||||||||||||||| || || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 3 gagaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaaggaagtt 62
Query: 340 ctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttc 399
|||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||
Sbjct: 63 ttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttc 122
Query: 400 cgggagcgcct 410
|||||||||||
Sbjct: 123 cgggagcgcct 133
>gb|AU163000.1|AU163000 AU163000 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14255, mRNA sequence
Length = 490
Score = 155 bits (78), Expect = 4e-035
Identities = 124/138 (89%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 274 atgaccgagaac-actcctgatgacccccgccagaggaagccggacatcacaaaggcgaa 332
||||| |||||| ||||||||||| || || ||||||||||| ||||| |||||||| ||
Sbjct: 33 atgactgagaactactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaa 92
Query: 333 ggaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggagga 392
||||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 93 ggaagttttggggtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaaga 152
Query: 393 tgatttccgggagcgcct 410
||||||||||||||||||
Sbjct: 153 tgatttccgggagcgcct 170
>gb|AU184684.1|AU184684 AU184684 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3370, mRNA sequence
Length = 449
Score = 155 bits (78), Expect = 4e-035
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 285 cactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctggg 344
|||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| ||||
Sbjct: 1 cactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaaggaagttttggg 60
Query: 345 atgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccggga 404
||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 61 gtgggagcccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccggga 120
Query: 405 gcgcct 410
||||||
Sbjct: 121 gcgcct 126
>gb|CV720735.1|CV720735 YBH--01-K14.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-K14, mRNA sequence
Length = 375
Score = 153 bits (77), Expect = 2e-034
Identities = 116/129 (89%)
Strand = Plus / Plus
Query: 282 gaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttct 341
||||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||| |
Sbjct: 10 gaacactcctgatgatcctcgtcagaggaagccagacattacaaaggcaaaggaagtttt 69
Query: 342 gggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccg 401
||| ||||||||||||||||| ||||| || |||||| |||||||||| |||||||||||
Sbjct: 70 ggggtgggagcccaagatcgttctgcgtgatggcttgttgctcatggaagatgatttccg 129
Query: 402 ggagcgcct 410
|||||||||
Sbjct: 130 ggagcgcct 138
>gb|AU184606.1|AU184606 AU184606 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3117, mRNA sequence
Length = 449
Score = 151 bits (76), Expect = 6e-034
Identities = 121/137 (88%)
Strand = Plus / Plus
Query: 274 atgaccgagaacactcctgatgacccccgccagaggaagccggacatcacaaaggcgaag 333
||||| ||||||||||||||||| || || ||||||||||| ||||| ||||||| |||
Sbjct: 6 atgactgagaacactcctgatgatcctcgtcagaggaagccagacattncaaaggcaaag 65
Query: 334 gaagttctgggatgggagcccaagatcgtcctgcgggacggcttggtgctcatggaggat 393
|||||| |||| ||||||||||||||||| |||| || ||||||||||||||||| ||
Sbjct: 66 gaagttttggggtgggagcccaagatcgttntgcgtgatggcttggtgctcatggaanat 125
Query: 394 gatttccgggagcgcct 410
|||||||||||||||||
Sbjct: 126 gatttccgggagcgcct 142
>gb|AU197932.1|AU197932 AU197932 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13259, mRNA sequence
Length = 449
Score = 151 bits (76), Expect = 6e-034
Identities = 112/124 (90%)
Strand = Plus / Plus
Query: 287 ctcctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggat 346
|||||||||| || || ||||||||||| ||||| |||||||| ||||||||| |||| |
Sbjct: 1 ctcctgatgatcctcgtcagaggaagccagacattacaaaggcaaaggaagttttggggt 60
Query: 347 gggagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagc 406
|||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 61 gggagcccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagc 120
Query: 407 gcct 410
||||
Sbjct: 121 gcct 124
>gb|CA999243.1|CA999243 S234P_C09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 445
Score = 147 bits (74), Expect = 1e-032
Identities = 110/122 (90%)
Strand = Plus / Plus
Query: 289 cctgatgacccccgccagaggaagccggacatcacaaaggcgaaggaagttctgggatgg 348
|||||||| || || ||||||||||| ||||| |||||||| ||||||||| |||| |||
Sbjct: 1 cctgatgatcctcgtcagaggaagccagacattacaaaggcaaaggaagttttggggtgg 60
Query: 349 gagcccaagatcgtcctgcgggacggcttggtgctcatggaggatgatttccgggagcgc 408
|||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gagcccaagatcgttctgcgtgatggcttggtgctcatggaagatgatttccgggagcgc 120
Query: 409 ct 410
||
Sbjct: 121 ct 122
>gb|AU164500.1|AU164500 AU164500 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0124, mRNA sequence
Length = 413
Score = 141 bits (71), Expect = 6e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 304 cagaggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtc 363
||||||||||| ||||| |||||||| ||||||||| |||| |||||||||||||||||
Sbjct: 2 cagaggaagccagacattacaaaggcaaaggaagttttggggtgggagcccaagatcgtt 61
Query: 364 ctgcgggacggcttggtgctcatggaggatgatttccgggagcgcct 410
||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 62 ctgcgtgatggcttggtgctcatggaagatgatttccgggagcgcct 108
>gb|CF303667.1|CF303667 ABF1--02-O09.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-O09, mRNA sequence
Length = 612
Score = 139 bits (70), Expect = 2e-030
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 1 caacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctg 60
|||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||
Sbjct: 476 caacacctatggacctaggatgaacattgatgatgggcgtgttgttagtaacttcat-tg 534
Query: 61 ctcaggctgtgcgcggtgagcccctgactgtccagaggccaggaacacagactaggagtt 120
||||||| || || || |||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 535 ctcaggccgtacgtggcgagcccctgactgttcagaagccaggaacacaaactaggag-c 593
Query: 121 ttctgctatgttgc 134
||||||||||||||
Sbjct: 594 ttctgctatgttgc 607
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 867,066
Number of Sequences: 438736
Number of extensions: 867066
Number of successful extensions: 4626
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4259
Number of HSP's gapped (non-prelim): 319
length of query: 725
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 704
effective length of database: 2,791,206,460
effective search space: 1965009347840
effective search space used: 1965009347840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)