BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 307 4e-081
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 307 4e-081
gb|AACV01014669.1| Oryza sativa (japonica cultivar-group) c... 307 4e-081
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 307 4e-081
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 307 4e-081
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 307 4e-081
dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA... 299 1e-078
gb|CD670796.1|CD670796 OsMR213 5MT resistant rice mutant cD... 295 2e-077
gb|CA999290.1|CA999290 S234P_H09 Rice cold stress germinati... 174 4e-041
gb|CB001041.1|CB001041 S345H_F03 Rice cold stress germinati... 153 2e-034
gb|C25424.1|C25424 C25424 Rice shoot Oryza sativa (japonica... 139 2e-030
gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3... 70 2e-009
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 70 2e-009
gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 70 2e-009
ref|XM_473449.1| Oryza sativa (japonica cultivar-group), p... 70 2e-009
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 70 2e-009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (jap... 66 3e-008
gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (jap... 66 3e-008
gb|AU184007.1|AU184007 AU184007 Rice root Oryza sativa (jap... 66 3e-008
gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cD... 66 3e-008
gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda pha... 66 3e-008
gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda pha... 66 3e-008
gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, c... 66 3e-008
dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AP004883.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
dbj|AP004037.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AY466109.1| Oryza sativa (japonica cultivar-group) lipid... 58 7e-006
ref|XM_473448.1| Oryza sativa (japonica cultivar-group), p... 58 7e-006
gb|AU078328.1|AU078328 AU078328 Rice panicle at ripening st... 56 3e-005
gb|AU101404.1|AU101404 AU101404 Rice panicle shorter than 3... 56 3e-005
gb|CV724500.1|CV724500 14Salt--01-B21.b1 Salt treated rice ... 56 3e-005
gb|CV725574.1|CV725574 14Salt--02-L17.g1 Salt treated rice ... 56 3e-005
gb|CV727251.1|CV727251 14Salt--05-E24.g1 Salt treated rice ... 56 3e-005
gb|CV727305.1|CV727305 14Salt--05-G05.b1 Salt treated rice ... 56 3e-005
gb|CV728268.1|CV728268 14Salt--06-O07.b1 Salt treated rice ... 56 3e-005
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 56 3e-005
dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AACV01012630.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|AACV01013105.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
dbj|AB023482.2| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
dbj|AP002864.2| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 56 3e-005
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 56 3e-005
ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AU078327.1|AU078327 AU078327 Rice panicle at ripening st... 52 4e-004
gb|CV727621.1|CV727621 14Salt--05-N17.b1 Salt treated rice ... 52 4e-004
gb|CV723709.1|CV723709 root--04-I08.g1 Rice root lambda pha... 50 0.002
gb|AQ796380.1|AQ796380 nbxb0063M17f CUGI Rice BAC Library O... 48 0.007
gb|CB659556.1|CB659556 OSJNEc16K08.f OSJNEc Oryza sativa (j... 48 0.007
ref|XM_473862.1| Oryza sativa (japonica cultivar-group), p... 48 0.007
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 48 0.007
emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromoso... 48 0.007
gb|AQ914346.1|AQ914346 nbeb0048M18f CUGI Rice BAC Library (... 46 0.026
gb|C25142.1|C25142 C25142 Rice shoot Oryza sativa (japonica... 44 0.10
gb|AU095289.1|AU095289 AU095289 Rice cDNA from immature lea... 44 0.10
gb|AU102024.1|AU102024 AU102024 Rice shoot Oryza sativa (ja... 44 0.10
gb|CA998317.1|CA998317 S345B_D04 Rice cold stress germinati... 44 0.10
gb|CV727622.1|CV727622 14Salt--05-N17.g1 Salt treated rice ... 44 0.10
dbj|AK066885.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.10
gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 ... 44 0.10
gb|AACV01000580.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01006691.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01007901.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|AACV01010122.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
ref|XM_469705.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.10
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 44 0.10
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|D48490.1|D48490 RICS14709A Rice green shoot Oryza sativa... 42 0.41
gb|AC130606.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AK063684.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.41
dbj|AK121295.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.41
emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC O... 42 0.41
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 42 0.41
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 42 0.41
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 42 0.41
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 42 0.41
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
dbj|AP004278.2| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01010566.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01012554.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01014863.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01024699.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
gb|AACV01028070.1| Oryza sativa (japonica cultivar-group) C... 42 0.41
gb|AACV01031195.1| Oryza sativa (japonica cultivar-group) C... 42 0.41
ref|XM_470041.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.41
ref|XM_474093.1| Oryza sativa (japonica cultivar-group), p... 42 0.41
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 42 0.41
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 42 0.41
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 42 0.41
gb|AC130604.4| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromoso... 42 0.41
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.41
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 3309516 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 3309575
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 3309576 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 3309635
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 3309636 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 3309695
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 3309696 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 3309755
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 3309756 cctgcggcaagaaccctccccccggctacacctgc 3309790
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 3310237 acatgagaggatgtcgtctgct 3310258
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 126235 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 126294
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 126295 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 126354
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 126355 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 126414
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 126415 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 126474
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 126475 cctgcggcaagaaccctccccccggctacacctgc 126509
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 126956 acatgagaggatgtcgtctgct 126977
>gb|AACV01014669.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014669, whole
genome shotgun sequence
Length = 5817
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Minus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 5155 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 5096
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 5095 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 5036
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 5035 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 4976
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 4975 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 4916
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 4915 cctgcggcaagaaccctccccccggctacacctgc 4881
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 4434 acatgagaggatgtcgtctgct 4413
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 7185729 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 7185788
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 7185789 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 7185848
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 7185849 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 7185908
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 7185909 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 7185968
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 7185969 cctgcggcaagaaccctccccccggctacacctgc 7186003
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 7186450 acatgagaggatgtcgtctgct 7186471
Score = 42.1 bits (21), Expect = 0.41
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacg 39
||||||||||||||||| |||| ||||||
Sbjct: 10326971 gcccgacgccgacgccgacgtcaccgacg 10326999
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 24884466 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 24884525
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 24884526 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 24884585
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 24884586 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 24884645
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 24884646 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 24884705
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 24884706 cctgcggcaagaaccctccccccggctacacctgc 24884740
Score = 56.0 bits (28), Expect = 3e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 202 ctcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
||||||||||||||| ||||||| || | |||||| |||| ||| ||||||||||||||
Sbjct: 3345053 ctcctcaacatcaacatctacctccccgtcgcgctcgagctgctcatcacctgcggcaag 3344994
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctg 93
|||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||
Sbjct: 3345219 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgggggggctg 3345162
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 24885187 acatgagaggatgtcgtctgct 24885208
Score = 42.1 bits (21), Expect = 0.41
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacg 39
||||||||||||||||| |||| ||||||
Sbjct: 28025708 gcccgacgccgacgccgacgtcaccgacg 28025736
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 307 bits (155), Expect = 4e-081
Identities = 245/275 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 25844031 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 25844090
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 25844091 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 25844150
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 25844151 gctgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 25844210
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 25844211 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 25844270
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 25844271 cctgcggcaagaaccctccccccggctacacctgc 25844305
Score = 56.0 bits (28), Expect = 3e-005
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 202 ctcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
||||||||||||||| ||||||| || | |||||| |||| ||| ||||||||||||||
Sbjct: 3455134 ctcctcaacatcaacatctacctccccgtcgcgctcgagctgctcatcacctgcggcaag 3455075
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctg 93
|||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||
Sbjct: 3455300 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgggggggctg 3455243
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 25844752 acatgagaggatgtcgtctgct 25844773
Score = 42.1 bits (21), Expect = 0.41
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacg 39
||||||||||||||||| |||| ||||||
Sbjct: 28893277 gcccgacgccgacgccgacgtcaccgacg 28893305
>dbj|AK103715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137N14, full
insert sequence
Length = 1338
Score = 299 bits (151), Expect = 1e-078
Identities = 244/275 (88%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 576 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 635
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 636 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 695
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 696 gttgcccgctgctggaggggctcgtggagctggaggccgccgtgtgcctctgcaccacca 755
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 756 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 815
Query: 251 cctgcggcaagacgccgccgccgggctacacctgc 285
|||||||||||| || || || ||||||||||||
Sbjct: 816 cctgcggcaagaaccctccccccggctacacctgc 850
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 1008 acatgagaggatgtcgtctgct 1029
>gb|CD670796.1|CD670796 OsMR213 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 573
Score = 295 bits (149), Expect = 2e-077
Identities = 227/253 (89%)
Strand = Plus / Plus
Query: 11 gcccgacgccgacgccgtcgtcgccgacgtgcccggcggactcgctgaagctgggcgcgt 70
||||| ||||| ||||| || ||| || |||||||| ||||||||||||| | || ||||
Sbjct: 287 gcccgccgccgccgccggcgacgcagaggtgcccggtggactcgctgaagatcggggcgt 346
Query: 71 gcgtggacctgctgggcgggctggtgcatatcggcctcggcgaccccgtggtgaacaagt 130
|||||||||||||||| ||||||||||| | || |||||||||| |||||||||||||
Sbjct: 347 gcgtggacctgctgggggggctggtgcacgtggggatcggcgacccggtggtgaacaagt 406
Query: 131 gctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccacca 190
|||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct: 407 gctgcccgttgctggaggggctcgcggagctggaggccgccgtgtgcctctgcaccacca 466
Query: 191 tcaagctcaggctcctcaacatcaacctctacctgccactggcgctccagctcctcctca 250
||| ||||| |||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 467 tcaggctcaagctcctcaacatcaacatctacctgcccctcgcgctccagctcctcctca 526
Query: 251 cctgcggcaagac 263
|||||||||||||
Sbjct: 527 cctgcggcaagac 539
>gb|CA999290.1|CA999290 S234P_H09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 494
Score = 174 bits (88), Expect = 4e-041
Identities = 121/132 (91%)
Strand = Plus / Plus
Query: 154 gtggagctggaggcggccgtgtgcctctgcaccaccatcaagctcaggctcctcaacatc 213
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 4 gtggagctggaggccgccgtgtgcctctgcaccaccatcaggctcaagctcctcaacatc 63
Query: 214 aacctctacctgccactggcgctccagctcctcctcacctgcggcaagacgccgccgccg 273
||| |||||||||| || ||||||||||||||||||||||||||||||| || || ||
Sbjct: 64 aacatctacctgcccctcgcgctccagctcctcctcacctgcggcaagaaccctcccccc 123
Query: 274 ggctacacctgc 285
||||||||||||
Sbjct: 124 ggctacacctgc 135
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 398 acatgagaggatgtcgtctgct 419
||||||||||||||||||||||
Sbjct: 293 acatgagaggatgtcgtctgct 314
>gb|CB001041.1|CB001041 S345H_F03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 261
Score = 153 bits (77), Expect = 2e-034
Identities = 107/117 (91%)
Strand = Plus / Plus
Query: 169 gccgtgtgcctctgcaccaccatcaagctcaggctcctcaacatcaacctctacctgcca 228
||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 3 gccgtgtgcctctgcaccaccatcaggctcaagctcctcaacatcaacatctacctgccc 62
Query: 229 ctggcgctccagctcctcctcacctgcggcaagacgccgccgccgggctacacctgc 285
|| ||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 63 ctcgcgctccagctcctcctcacctgcggcaagaaccctccccccggctacacctgc 119
>gb|C25424.1|C25424 C25424 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6356_1A, mRNA sequence
Length = 252
Score = 139 bits (70), Expect = 2e-030
Identities = 100/110 (90%)
Strand = Plus / Plus
Query: 176 gcctctgcaccaccatcaagctcaggctcctcaacatcaacctctacctgccactggcgc 235
|||||||||||||||||| ||||| |||||||||||||||| |||||||||| || ||||
Sbjct: 1 gcctctgcaccaccatcaggctcaagctcctcaacatcaacatctacctgcccctcgcgc 60
Query: 236 tccagctcctcctcacctgcggcaagacgccgccgccgggctacacctgc 285
||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 61 tccagctcctcctcacctgcggcaagaaccctccccccggctacacctgc 110
>gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30571, mRNA sequence
Length = 711
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 208 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 267
Query: 189 catcaag 195
|||||||
Sbjct: 268 catcaag 274
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete
sequence
Length = 135510
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 66987 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 66928
Query: 189 catcaag 195
|||||||
Sbjct: 66927 catcaag 66921
>gb|AACV01010254.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010254, whole
genome shotgun sequence
Length = 23371
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 4266 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 4207
Query: 189 catcaag 195
|||||||
Sbjct: 4206 catcaag 4200
Score = 52.0 bits (26), Expect = 4e-004
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggcc-gtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || ||||||||| || |||||||||||
Sbjct: 7467 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggccggtatgcctctgcac 7410
>gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022087, whole
genome shotgun sequence
Length = 9818
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 6477 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 6536
Query: 189 catcaag 195
|||||||
Sbjct: 6537 catcaag 6543
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 3189566 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 3189625
Query: 189 catcaag 195
|||||||
Sbjct: 3189626 catcaag 3189632
>ref|XM_473449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 396
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 231 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 290
Query: 189 catcaag 195
|||||||
Sbjct: 291 catcaag 297
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 1493499 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 1493558
Query: 189 catcaag 195
|||||||
Sbjct: 1493559 catcaag 1493565
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 1490299 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 1490355
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 9242157 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 9242216
Query: 189 catcaag 195
|||||||
Sbjct: 9242217 catcaag 9242223
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 5544725 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 5544784
Query: 189 catcaag 195
|||||||
Sbjct: 5544785 catcaag 5544791
Score = 52.0 bits (26), Expect = 4e-004
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggcc-gtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || ||||||||| || |||||||||||
Sbjct: 5541524 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggccggtatgcctctgcac 5541581
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagcccgacgccgacgccgtcgtcgc 34
||||||||||||| ||||||||||||
Sbjct: 3714416 gagcccgacgccgccgccgtcgtcgc 3714441
Score = 42.1 bits (21), Expect = 0.41
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 163 gaggcggccgtgtgcctctgcaccaccatcaag 195
|||||||| | |||| |||||||||||||||||
Sbjct: 10499305 gaggcggcggcgtgcttctgcaccaccatcaag 10499273
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 20107951 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 20108010
Query: 189 catcaag 195
|||||||
Sbjct: 20108011 catcaag 20108017
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 24688824 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 24688883
Query: 189 catcaag 195
|||||||
Sbjct: 24688884 catcaag 24688890
Score = 52.0 bits (26), Expect = 4e-004
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggcc-gtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || ||||||||| || |||||||||||
Sbjct: 24685623 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggccggtatgcctctgcac 24685680
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gagcccgacgccgacgccgtcgtcgc 34
||||||||||||| ||||||||||||
Sbjct: 22858515 gagcccgacgccgccgccgtcgtcgc 22858540
Score = 42.1 bits (21), Expect = 0.41
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 163 gaggcggccgtgtgcctctgcaccaccatcaag 195
|||||||| | |||| |||||||||||||||||
Sbjct: 29643404 gaggcggcggcgtgcttctgcaccaccatcaag 29643372
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
complete sequence
Length = 173522
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 147478 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 147537
Query: 189 catcaag 195
|||||||
Sbjct: 147538 catcaag 147544
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 144278 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 144334
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||||||||||| || || || |||||||| |||||||||||||| |
Sbjct: 27716852 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcacggc 27716911
Query: 189 catcaag 195
|||||||
Sbjct: 27716912 catcaag 27716918
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 27713652 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 27713708
Score = 48.1 bits (24), Expect = 0.007
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 39 gtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctggtgca 98
|||||||| |||| ||||||||||| |||||||||||| |||| ||||||||||||
Sbjct: 31085438 gtgcccggtggacacgctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgca 31085497
Score = 42.1 bits (21), Expect = 0.41
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 163 gaggcggccgtgtgcctctgcaccaccatcaag 195
|||||||| | |||| |||||||||||||||||
Sbjct: 32831819 gaggcggcggcgtgcttctgcaccaccatcaag 32831787
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 21267372 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 21267431
Query: 189 catcaag 195
|||||||
Sbjct: 21267432 catcaag 21267438
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 69.9 bits (35), Expect = 2e-009
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcaccac 188
|||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 21278636 gtgctgcccgctgctgaacgggctggtggacctggaggcggcggtgtgcctgtgcacggc 21278695
Query: 189 catcaag 195
|||||||
Sbjct: 21278696 catcaag 21278702
>gb|AU164628.1|AU164628 AU164628 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 521
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 326 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 382
>gb|AU164629.1|AU164629 AU164629 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0812, mRNA sequence
Length = 706
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 200 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 256
>gb|AU184007.1|AU184007 AU184007 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0352, mRNA sequence
Length = 446
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 324 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 380
>gb|CO435581.1|CO435581 OsMR647 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 958
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 329 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 385
>gb|CV723796.1|CV723796 root--04-M22.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-M22, mRNA sequence
Length = 488
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 340 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 396
>gb|CV723850.1|CV723850 root--04-P16.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--04-P16, mRNA sequence
Length = 475
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 342 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 398
>gb|L27208.1|RICRCC3 Oryza sativa root-specific RCc3 mRNA, complete cds
Length = 715
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 264 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 320
>dbj|AK109149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F07, full
insert sequence
Length = 833
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 339 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 395
>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0516F12
Length = 146364
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 89872 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 89928
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1001_D02
Length = 129081
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 2362 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 2418
>gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005096, whole
genome shotgun sequence
Length = 37135
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 12002 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 12058
>ref|XM_467170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 833
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 339 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 395
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 1988818 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 1988874
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 13266408 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 13266464
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 26719472 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 26719528
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| ||||||||||||||
Sbjct: 26823819 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtgtgcctctgcac 26823875
>gb|AY466109.1| Oryza sativa (japonica cultivar-group) lipid transfer protein-like
protein (LTP2) mRNA, complete cds
Length = 758
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 306 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 362
>ref|XM_473448.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 393
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 129 gtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcac 185
|||||||||| ||||||||||||| || || || |||||||| || |||||||||||
Sbjct: 231 gtgctgcccgctgctggaggggctcgtcgacctcgaggcggcggtatgcctctgcac 287
>gb|AU078328.1|AU078328 AU078328 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11111_4Z, mRNA sequence
Length = 619
Score = 56.0 bits (28), Expect = 3e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 202 ctcctcaacatcaacctctacctgccactggcgctccagctcctcctcacctgcggcaag 261
||||||||||||||| ||||||| || | |||||| |||| ||| ||||||||||||||
Sbjct: 313 ctcctcaacatcaacatctacctccccgtcgcgctcgagctgctcatcacctgcggcaag 372
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 36 gacgtgcccggcggactcgctgaagctgggcgcgtgcgtggacctgctgggcgggctg 93
|||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||
Sbjct: 147 gacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctgggggggctg 204
>gb|AU101404.1|AU101404 AU101404 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30571, mRNA sequence
Length = 529
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 149 ggctggtggagctggaggcggccgtgtgcctctgcaccaccatcaagc 196
|||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 432 ggctggtggacctggaggcggcggtgtgcctgtgcacggccatcaagc 479
>gb|CV724500.1|CV724500 14Salt--01-B21.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--01-B21, mRNA sequence
Length = 530
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 128 agtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcacca 187
||||||||||| |||||| |||||| || || || || || ||||| ||||||||||||
Sbjct: 394 agtgctgcccgctgctgggggggctcgtcgacctcgacgccgccgtctgcctctgcaccg 453
Query: 188 ccatcaag 195
||||||||
Sbjct: 454 ccatcaag 461
>gb|CV725574.1|CV725574 14Salt--02-L17.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-L17, mRNA sequence
Length = 488
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 128 agtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcacca 187
||||||||||| |||||| |||||| || || || || || ||||| ||||||||||||
Sbjct: 408 agtgctgcccgctgctgggggggctcgtcgacctcgacgccgccgtctgcctctgcaccg 349
Query: 188 ccatcaag 195
||||||||
Sbjct: 348 ccatcaag 341
>gb|CV727251.1|CV727251 14Salt--05-E24.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-E24, mRNA sequence
Length = 527
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 128 agtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcacca 187
||||||||||| |||||| |||||| || || || || || ||||| ||||||||||||
Sbjct: 392 agtgctgcccgctgctgggggggctcgtcgacctcgacgccgccgtctgcctctgcaccg 451
Query: 188 ccatcaag 195
||||||||
Sbjct: 452 ccatcaag 459
>gb|CV727305.1|CV727305 14Salt--05-G05.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-G05, mRNA sequence
Length = 540
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 128 agtgctgcccggtgctggaggggctggtggagctggaggcggccgtgtgcctctgcacca 187
||||||||||| |||||| |||||| || || || || || ||||| ||||||||||||
Sbjct: 399 agtgctgcccgctgctgggggggctcgtcgacctcgacgccgccgtctgcctctgcaccg 458
Query: 188 ccatcaag 195
||||||||
Sbjct: 459 ccatcaag 466
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,012,996
Number of Sequences: 438736
Number of extensions: 2012996
Number of successful extensions: 20094
Number of sequences better than 0.5: 130
Number of HSP's better than 0.5 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17973
Number of HSP's gapped (non-prelim): 2110
length of query: 730
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 709
effective length of database: 2,791,206,460
effective search space: 1978965380140
effective search space used: 1978965380140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)