BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA... 724 0.0
ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA 724 0.0
ref|NM_184211.1| Oryza sativa (japonica cultivar-group), p... 690 0.0
gb|CF279890.1|CF279890 14ETL--06-F19.b1 Rice etiolated leaf... 446 e-122
gb|CB656727.1|CB656727 OSJNEc11G07.r OSJNEc Oryza sativa (j... 246 2e-062
dbj|AP002538.2| Oryza sativa (japonica cultivar-group) geno... 224 8e-056
dbj|AP002860.1| Oryza sativa (japonica cultivar-group) geno... 224 8e-056
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 224 8e-056
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 224 8e-056
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 224 8e-056
dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA... 184 7e-044
dbj|AK120005.1| Oryza sativa (japonica cultivar-group) cDNA... 157 2e-035
gb|AACV01000125.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|AC099734.5| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|AACV01020755.1| Oryza sativa (japonica cultivar-group) c... 101 8e-019
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 101 8e-019
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 101 8e-019
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 101 8e-019
gb|D48949.1|D48949 RICS15541A Rice green shoot Oryza sativa... 72 7e-010
gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (j... 70 3e-009
gb|CB666818.1|CB666818 OSJNEd13N23.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (j... 70 3e-009
gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (j... 70 3e-009
gb|CF308558.1|CF308558 ABF--02-G21.g1 ABF3-overexpressing t... 70 3e-009
dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA... 70 3e-009
dbj|AP002540.2| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01000194.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) c... 70 3e-009
ref|XM_474151.1| Oryza sativa (japonica cultivar-group), p... 70 3e-009
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 70 3e-009
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-009
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 70 3e-009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 70 3e-009
gb|AACV01000124.1| Oryza sativa (japonica cultivar-group) c... 66 4e-008
gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC n... 64 2e-007
gb|AACV01021520.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 64 2e-007
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 64 2e-007
gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (j... 62 7e-007
gb|CF291978.1|CF291978 14ROOT--02-K02.g1 Rice root plasmid ... 60 3e-006
gb|AACV01009495.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|NT_079858.2| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromoso... 56 4e-005
dbj|AP005877.3| Oryza sativa (japonica cultivar-group) geno... 48 0.010
dbj|AP005173.4| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|AACV01015328.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 48 0.010
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.010
gb|CB639865.1|CB639865 OSJNEa12E16.f OSJNEa Oryza sativa (j... 46 0.039
gb|CB644548.1|CB644548 OSJNEb05M24.f OSJNEb Oryza sativa (j... 46 0.039
gb|CB672919.1|CB672919 OSJNEe07D08.f OSJNEe Oryza sativa (j... 46 0.039
gb|CB676315.1|CB676315 OSJNEe12H24.f OSJNEe Oryza sativa (j... 46 0.039
dbj|AK067816.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK070606.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AK101706.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.039
dbj|AP005569.2| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP003509.3| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP003569.3| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|AACV01018395.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
gb|AACV01019062.1| Oryza sativa (japonica cultivar-group) c... 46 0.039
ref|XM_450039.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.039
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.039
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 46 0.039
ref|XM_506632.1| PREDICTED Oryza sativa (japonica cultivar-... 46 0.039
gb|CH401231.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.039
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.039
gb|AU225373.1|AU225373 AU225373 Oryza sativa Koshihikari pi... 44 0.16
gb|CB639453.1|CB639453 OSJNEa10K21.f OSJNEa Oryza sativa (j... 44 0.16
gb|CB650112.1|CB650112 OSJNEb14G06.f OSJNEb Oryza sativa (j... 44 0.16
gb|CB668345.1|CB668345 OSJNEd16C15.f OSJNEd Oryza sativa (j... 44 0.16
dbj|AK068789.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AK109683.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AK111497.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 ... 44 0.16
gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 ... 44 0.16
gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19... 44 0.16
dbj|AP004789.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AC130726.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
dbj|AP005260.4| Oryza sativa (japonica cultivar-group) geno... 44 0.16
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.16
dbj|AP004279.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP005446.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP005457.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AACV01004077.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01008012.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01010605.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01011625.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01014521.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01014839.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01015777.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01018412.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
gb|AACV01021851.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
ref|NM_194086.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.16
ref|NM_197129.1| Oryza sativa (japonica cultivar-group) put... 44 0.16
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 44 0.16
ref|XM_465290.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.16
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.16
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 44 0.16
ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-... 44 0.16
dbj|AP003947.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 44 0.16
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 44 0.16
gb|CH401222.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromoso... 44 0.16
emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromoso... 44 0.16
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full
insert sequence
Length = 1290
Score = 724 bits (365), Expect = 0.0
Identities = 682/787 (86%), Gaps = 3/787 (0%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 902 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 843
Query: 245 ccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgctccacat 304
|||| || ||||||| | | | ||||| |||||||||||||| ||||||||||| ||||
Sbjct: 842 ccacgattgggtaccgagagtagaaatagtcatctcctagagtaatgtcttgctcaacat 783
Query: 305 ctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttcgcgcagg 364
|||||||||| || |||||||| ||| ||||||||||| |||||||| || || ||||
Sbjct: 782 ctttgtaggcataattgcaggacagatgtatgctctcaattgcatagtcatttgcacagg 723
Query: 365 tcgcgtgtttgttcttgcaattttcccagtggacgatgtcgtcagaccatccatctgtaa 424
| | | |||||| |||||||||||||| ||| || ||||||||||||||||| |
Sbjct: 722 tttcctttttgttgccacaattttcccagtgactgatatcttcagaccatccatctgtga 663
Query: 425 gattcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcg 484
| ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |
Sbjct: 662 ggttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatgg 603
Query: 485 ccgtatcaataatgctgacatcccacacgtgatggaggtttgctttcctccggtaccagt 544
|||| || || |||||| |||||||| || || |||||| | ||||||||||||||||
Sbjct: 602 ccgtctctatgatgctgttgtcccacacatggtgaaggttttccttcctccggtaccagt 543
Query: 545 ggacggtgatggtgttaccgccctcgtcatcttcgaagcctacgtgcagcggctggtgga 604
| || |||||||||| || || ||||| || |||||||| ||||||||||||||||| |
Sbjct: 542 gcactttgatggtgttgcccccttcgtcttcctcgaagccgacgtgcagcggctggtgca 483
Query: 605 cgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatacgaagtcttc- 663
|||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||
Sbjct: 482 cgtcgccgacgaagtgggccaggaacatcaggctctccgtcaggttgtatgaactctttg 423
Query: 664 --tggccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcc 721
| ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 422 aatcgccatagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcc 363
Query: 722 cttgctggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttgggggg 781
|||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 362 cttgctggtgacgagaattatggcagtcccgtgagtacttgaagttgcagacttgggggg 303
Query: 782 tgttggcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacg 841
|||||||||||||||| || | | ||||| |||||| | ||||||| ||| |||||||
Sbjct: 302 tgttggcgtagtggagaggacgagaccagtagtagtggaatcgcacctcgtcggcccacg 243
Query: 842 ggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccg 901
||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct: 242 ggcacaccgtcgacagctccccgccggccgactccggcagcagctcctccaccgccgccg 183
Query: 902 ccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttc 961
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 182 ccgccttctccgacaggtacttctcggcgatcttgcagacgatgatgtggccctgcttgc 123
Query: 962 cccacgc 968
|||||||
Sbjct: 122 cccacgc 116
>ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1290
Score = 724 bits (365), Expect = 0.0
Identities = 682/787 (86%), Gaps = 3/787 (0%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 902 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 843
Query: 245 ccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgctccacat 304
|||| || ||||||| | | | ||||| |||||||||||||| ||||||||||| ||||
Sbjct: 842 ccacgattgggtaccgagagtagaaatagtcatctcctagagtaatgtcttgctcaacat 783
Query: 305 ctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttcgcgcagg 364
|||||||||| || |||||||| ||| ||||||||||| |||||||| || || ||||
Sbjct: 782 ctttgtaggcataattgcaggacagatgtatgctctcaattgcatagtcatttgcacagg 723
Query: 365 tcgcgtgtttgttcttgcaattttcccagtggacgatgtcgtcagaccatccatctgtaa 424
| | | |||||| |||||||||||||| ||| || ||||||||||||||||| |
Sbjct: 722 tttcctttttgttgccacaattttcccagtgactgatatcttcagaccatccatctgtga 663
Query: 425 gattcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcg 484
| ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |
Sbjct: 662 ggttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatgg 603
Query: 485 ccgtatcaataatgctgacatcccacacgtgatggaggtttgctttcctccggtaccagt 544
|||| || || |||||| |||||||| || || |||||| | ||||||||||||||||
Sbjct: 602 ccgtctctatgatgctgttgtcccacacatggtgaaggttttccttcctccggtaccagt 543
Query: 545 ggacggtgatggtgttaccgccctcgtcatcttcgaagcctacgtgcagcggctggtgga 604
| || |||||||||| || || ||||| || |||||||| ||||||||||||||||| |
Sbjct: 542 gcactttgatggtgttgcccccttcgtcttcctcgaagccgacgtgcagcggctggtgca 483
Query: 605 cgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatacgaagtcttc- 663
|||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||
Sbjct: 482 cgtcgccgacgaagtgggccaggaacatcaggctctccgtcaggttgtatgaactctttg 423
Query: 664 --tggccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcc 721
| ||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 422 aatcgccatagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcc 363
Query: 722 cttgctggccacgagaattgtggcagtcccgagaatacttgaagttgcagacttgggggg 781
|||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 362 cttgctggtgacgagaattatggcagtcccgtgagtacttgaagttgcagacttgggggg 303
Query: 782 tgttggcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgcccacg 841
|||||||||||||||| || | | ||||| |||||| | ||||||| ||| |||||||
Sbjct: 302 tgttggcgtagtggagaggacgagaccagtagtagtggaatcgcacctcgtcggcccacg 243
Query: 842 ggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgccgccg 901
||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct: 242 ggcacaccgtcgacagctccccgccggccgactccggcagcagctcctccaccgccgccg 183
Query: 902 ccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccctcctttc 961
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 182 ccgccttctccgacaggtacttctcggcgatcttgcagacgatgatgtggccctgcttgc 123
Query: 962 cccacgc 968
|||||||
Sbjct: 122 cccacgc 116
>ref|NM_184211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 933
Score = 690 bits (348), Expect = 0.0
Identities = 682/793 (86%), Gaps = 9/793 (1%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 889 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 830
Query: 245 ccacaatcgggtacctactgaaaaaataatcat------ctcctagagtgatgtcttgct 298
|||| || ||||||| | | | ||||| |||| |||||||||| ||||||||||
Sbjct: 829 ccacgattgggtaccgagagtagaaatagtcatactcacctcctagagtaatgtcttgct 770
Query: 299 ccacatctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttcg 358
| |||||||||||||| || |||||||| ||| ||||||||||| |||||||| || |
Sbjct: 769 caacatctttgtaggcataattgcaggacagatgtatgctctcaattgcatagtcatttg 710
Query: 359 cgcaggtcgcgtgtttgttcttgcaattttcccagtggacgatgtcgtcagaccatccat 418
| ||||| | | |||||| |||||||||||||| ||| || |||||||||||||
Sbjct: 709 cacaggtttcctttttgttgccacaattttcccagtgactgatatcttcagaccatccat 650
Query: 419 ctgtaagattcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtcct 478
|||| || ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||
Sbjct: 649 ctgtgaggttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtcct 590
Query: 479 tgatcgccgtatcaataatgctgacatcccacacgtgatggaggtttgctttcctccggt 538
| || ||||| || || |||||| |||||||| || || |||||| | ||||||||||
Sbjct: 589 tcatggccgtctctatgatgctgttgtcccacacatggtgaaggttttccttcctccggt 530
Query: 539 accagtggacggtgatggtgttaccgccctcgtcatcttcgaagcctacgtgcagcggct 598
||||||| || |||||||||| || || ||||| || |||||||| |||||||||||||
Sbjct: 529 accagtgcactttgatggtgttgcccccttcgtcttcctcgaagccgacgtgcagcggct 470
Query: 599 ggtggacgtcgccgacgaagtgtgccaggaacatcaggctctccgtcaggttatacgaag 658
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 469 ggtgcacgtcgccgacgaagtgggccaggaacatcaggctctccgtcaggttgtatgaac 410
Query: 659 tcttc---tggccgtagctgtagagctggtccgtgtagttgttgatagccccgacgacgc 715
|||| | ||| |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 409 tctttgaatcgccatagctgtagagctgatcggtgtagttgttgatagccccgacaacgc 350
Query: 716 acatcccttgctggccacgagaattgtggcagtcccgagaatacttgaagttgcagactt 775
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 349 acatcccttgctggtgacgagaattatggcagtcccgtgagtacttgaagttgcagactt 290
Query: 776 ggggggtgttggcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccg 835
|||||||||||||||||||||| || | | ||||| |||||| | ||||||| ||| |
Sbjct: 289 ggggggtgttggcgtagtggagaggacgagaccagtagtagtggaatcgcacctcgtcgg 230
Query: 836 cccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccg 895
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct: 229 cccacgggcacaccgtcgacagctccccgccggccgactccggcagcagctcctccaccg 170
Query: 896 ccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtggccct 955
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 169 ccgccgccgccttctccgacaggtacttctcggcgatcttgcagacgatgatgtggccct 110
Query: 956 cctttccccacgc 968
||| ||||||||
Sbjct: 109 gcttgccccacgc 97
>gb|CF279890.1|CF279890 14ETL--06-F19.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--06-F19, mRNA sequence
Length = 512
Score = 446 bits (225), Expect = e-122
Identities = 349/387 (90%), Gaps = 5/387 (1%)
Strand = Plus / Minus
Query: 586 acgtgcagcggctggtggacgtcgcc-gacgaagtgtgccaggaacatcaggctctccgt 644
||||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 508 acgtgcagcggctggtgcacgtcgcccgacgaaggg-gccaggaacatcaggctctccgt 450
Query: 645 caggttatacgaagtcttc---tggccgtagctgtagagctggtccgtgtagttgttgat 701
|||||| || ||| |||| | ||| |||||||||||||| || ||||||||||||||
Sbjct: 449 caggttgtatgaactctttgaatcgccatagctgtagagctgatcggtgtagttgttgat 390
Query: 702 agccccgacgacgcacatcccttgctggccacgagaattgtggcagtcccgagaatactt 761
||||||||| |||||||||||||||||| ||||||||| ||||||||||| || |||||
Sbjct: 389 agccccgacaacgcacatcccttgctggtgacgagaattatggcagtcccgtgagtactt 330
Query: 762 gaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtagtgcca 821
|||||||||||||||||||||||||||||||||||| || | | ||||| |||||| |
Sbjct: 329 gaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtagtggaa 270
Query: 822 gcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactccggcag 881
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 tcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactccggcag 210
Query: 882 cagcgcctgcaccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagac 941
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cagctcctccaccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagac 150
Query: 942 catgatgtggccctcctttccccacgc 968
||||||||||||| ||| ||||||||
Sbjct: 149 gatgatgtggccctgcttgccccacgc 123
>gb|CB656727.1|CB656727 OSJNEc11G07.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11G07 3', mRNA sequence
Length = 830
Score = 246 bits (124), Expect = 2e-062
Identities = 313/376 (83%)
Strand = Plus / Plus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 440 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 499
Query: 245 ccacaatcgggtacctactgaaaaaataatcatctcctagagtgatgtcttgctccacat 304
|||| || ||||||| | | | ||||| |||||||||||||| ||||||||||| ||||
Sbjct: 500 ccacgattgggtaccgagagtagaaatagtcatctcctagagtaatgtcttgctcaacat 559
Query: 305 ctttgtaggcgtagttgcaggaataatggatgctctcaatcgcatagtcgttcgcgcagg 364
|||||||||| || |||||||| ||| ||||||||||| |||||||| || || ||||
Sbjct: 560 ctttgtaggcataattgcaggacagatgtatgctctcaattgcatagtcatttgcacagg 619
Query: 365 tcgcgtgtttgttcttgcaattttcccagtggacgatgtcgtcagaccatccatctgtaa 424
| | | |||||| |||||||||||||| ||| || ||||||||||||||||| |
Sbjct: 620 tttcctttttgttgccacaattttcccagtgactgatatcttcagaccatccatctgtga 679
Query: 425 gattcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcg 484
| ||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |
Sbjct: 680 ggttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatgg 739
Query: 485 ccgtatcaataatgctgacatcccacacgtgatggaggtttgctttcctccggtaccagt 544
|||| || || |||||| |||||||| || || |||||| | ||||||||||||||||
Sbjct: 740 ccgtctctatgatgctgttgtcccacacatggtgaaggttttccttcctccggtaccagt 799
Query: 545 ggacggtgatggtgtt 560
| || ||||||||||
Sbjct: 800 gcactttgatggtgtt 815
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0408F06
Length = 137462
Score = 224 bits (113), Expect = 8e-056
Identities = 155/169 (91%)
Strand = Plus / Minus
Query: 757 tacttgaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtag 816
||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||
Sbjct: 2805 tacttgaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtag 2746
Query: 817 tgccagcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactcc 876
|| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2745 tggaatcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactcc 2686
Query: 877 ggcagcagcgcctgcaccgccgccgccgccttctccgacaggtacttct 925
||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 2685 ggcagcagctcctccaccgccgccgccgccttctccgacaggtacttct 2637
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 4597 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 4538
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 4537 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 4478
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 4477 tccgtcaggtt 4467
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4335 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 4276
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 4275 tgacgagaattatggcagtccc 4254
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 5310 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 5251
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 5250 ccacgattgggtacc 5236
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 5110 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 5051
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 5050 tctcaattgcatag 5037
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 4794 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 4735
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 4734 gtctctatgatgctg 4720
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 2537 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 2493
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0409B08
Length = 134673
Score = 224 bits (113), Expect = 8e-056
Identities = 155/169 (91%)
Strand = Plus / Minus
Query: 757 tacttgaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtag 816
||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||
Sbjct: 131222 tacttgaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtag 131163
Query: 817 tgccagcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactcc 876
|| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 131162 tggaatcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactcc 131103
Query: 877 ggcagcagcgcctgcaccgccgccgccgccttctccgacaggtacttct 925
||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 131102 ggcagcagctcctccaccgccgccgccgccttctccgacaggtacttct 131054
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 133014 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 132955
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 132954 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 132895
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 132894 tccgtcaggtt 132884
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 132752 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 132693
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 132692 tgacgagaattatggcagtccc 132671
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 133727 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 133668
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 133667 ccacgattgggtacc 133653
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 133527 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 133468
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 133467 tctcaattgcatag 133454
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 133211 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 133152
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 133151 gtctctatgatgctg 133137
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 130954 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 130910
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 224 bits (113), Expect = 8e-056
Identities = 155/169 (91%)
Strand = Plus / Minus
Query: 757 tacttgaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtag 816
||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||
Sbjct: 1563376 tacttgaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtag 1563317
Query: 817 tgccagcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactcc 876
|| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1563316 tggaatcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactcc 1563257
Query: 877 ggcagcagcgcctgcaccgccgccgccgccttctccgacaggtacttct 925
||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1563256 ggcagcagctcctccaccgccgccgccgccttctccgacaggtacttct 1563208
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1565168 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1565109
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1565108 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1565049
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1565048 tccgtcaggtt 1565038
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1564906 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 1564847
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 1564846 tgacgagaattatggcagtccc 1564825
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1565881 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1565822
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1565821 ccacgattgggtacc 1565807
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1565681 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1565622
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1565621 tctcaattgcatag 1565608
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 2661072 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 2661131
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 2661132 tgctggtgacgagaattatggc 2661153
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1565365 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1565306
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1565305 gtctctatgatgctg 1565291
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1563108 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1563064
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 224 bits (113), Expect = 8e-056
Identities = 155/169 (91%)
Strand = Plus / Minus
Query: 757 tacttgaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtag 816
||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||
Sbjct: 1563376 tacttgaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtag 1563317
Query: 817 tgccagcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactcc 876
|| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1563316 tggaatcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactcc 1563257
Query: 877 ggcagcagcgcctgcaccgccgccgccgccttctccgacaggtacttct 925
||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1563256 ggcagcagctcctccaccgccgccgccgccttctccgacaggtacttct 1563208
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1565168 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1565109
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1565108 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1565049
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1565048 tccgtcaggtt 1565038
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1564906 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 1564847
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 1564846 tgacgagaattatggcagtccc 1564825
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1565881 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1565822
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1565821 ccacgattgggtacc 1565807
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1565681 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1565622
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1565621 tctcaattgcatag 1565608
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 2661072 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 2661131
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 2661132 tgctggtgacgagaattatggc 2661153
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1565365 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1565306
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1565305 gtctctatgatgctg 1565291
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1563108 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1563064
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 224 bits (113), Expect = 8e-056
Identities = 155/169 (91%)
Strand = Plus / Minus
Query: 757 tacttgaagttgcagacttggggggtgttggcgtagtggagcgggctggcccagtggtag 816
||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||
Sbjct: 1565574 tacttgaagttgcagacttggggggtgttggcgtagtggagaggacgagaccagtagtag 1565515
Query: 817 tgccagcgcacctggtccgcccacgggcacaccgtcgacagctccccgcccgccgactcc 876
|| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1565514 tggaatcgcacctcgtcggcccacgggcacaccgtcgacagctccccgccggccgactcc 1565455
Query: 877 ggcagcagcgcctgcaccgccgccgccgccttctccgacaggtacttct 925
||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 1565454 ggcagcagctcctccaccgccgccgccgccttctccgacaggtacttct 1565406
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1567366 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1567307
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1567306 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1567247
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1567246 tccgtcaggtt 1567236
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1567104 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 1567045
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 1567044 tgacgagaattatggcagtccc 1567023
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1568079 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1568020
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1568019 ccacgattgggtacc 1568005
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1567879 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1567820
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1567819 tctcaattgcatag 1567806
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 2663270 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 2663329
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 2663330 tgctggtgacgagaattatggc 2663351
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1567563 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1567504
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1567503 gtctctatgatgctg 1567489
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1565306 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1565262
>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full
insert sequence
Length = 3171
Score = 184 bits (93), Expect = 7e-044
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 777 gggggtgttggcgtagtggagcgggctggcccagtggtagtgccagcgcacctggtccgc 836
||||||||||||||||||||| || | | ||||| |||||| | ||||||| ||| ||
Sbjct: 4 gggggtgttggcgtagtggagaggacgagaccagtagtagtggaatcgcacctcgtcggc 63
Query: 837 ccacgggcacaccgtcgacagctccccgcccgccgactccggcagcagcgcctgcaccgc 896
|||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 64 ccacgggcacaccgtcgacagctccccgccggccgactccggcagcagctcctccaccgc 123
Query: 897 cgccgccgccttctccgacaggtacttct 925
|||||||||||||||||||||||||||||
Sbjct: 124 cgccgccgccttctccgacaggtacttct 152
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 252 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 296
>dbj|AK120005.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A02, full
insert sequence
Length = 1537
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Plus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 624 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 683
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 684 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 743
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 744 tccgtcaggtt 754
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 886 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 945
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 946 tgacgagaattatggcagtccc 967
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 111 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 170
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 171 tctcaattgcatag 184
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 427 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 486
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 487 gtctctatgatgctg 501
>gb|AACV01000125.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000125, whole
genome shotgun sequence
Length = 14801
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1183 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1124
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1123 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1064
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1063 tccgtcaggtt 1053
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 921 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 862
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 861 tgacgagaattatggcagtccc 840
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1896 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1837
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1836 ccacgattgggtacc 1822
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1696 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1637
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1636 tctcaattgcatag 1623
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1380 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1321
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1320 gtctctatgatgctg 1306
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1591558 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1591499
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1591498 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1591439
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1591438 tccgtcaggtt 1591428
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1591296 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 1591237
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 1591236 tgacgagaattatggcagtccc 1591215
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1592271 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1592212
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1592211 ccacgattgggtacc 1592197
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1592071 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1592012
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1592011 tctcaattgcatag 1591998
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 2720325 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 2720384
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 2720385 tgctggtgacgagaattatggc 2720406
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1591755 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1591696
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1591695 gtctctatgatgctg 1591681
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1590297 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1590253
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 157 bits (79), Expect = 2e-035
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 520 aggtttgctttcctccggtaccagtggacggtgatggtgttaccgccctcgtcatcttcg 579
|||||| | ||||||||||||||||| || |||||||||| || || ||||| || |||
Sbjct: 1591558 aggttttccttcctccggtaccagtgcactttgatggtgttgcccccttcgtcttcctcg 1591499
Query: 580 aagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctc 639
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1591498 aagccgacgtgcagcggctggtgcacgtcgccgacgaagtgggccaggaacatcaggctc 1591439
Query: 640 tccgtcaggtt 650
|||||||||||
Sbjct: 1591438 tccgtcaggtt 1591428
Score = 115 bits (58), Expect = 5e-023
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgcacatcccttgctgg 729
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1591296 tagctgtagagctgatcggtgtagttgttgatagccccgacaacgcacatcccttgctgg 1591237
Query: 730 ccacgagaattgtggcagtccc 751
||||||||| ||||||||||
Sbjct: 1591236 tgacgagaattatggcagtccc 1591215
Score = 77.8 bits (39), Expect = 1e-011
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || ||||| |||| ||||||||
Sbjct: 1592271 caccaaatatccggttcagtatcaacgccaatctgatgccggcctgtgctagcctcttct 1592212
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 1592211 ccacgattgggtacc 1592197
Score = 75.8 bits (38), Expect = 4e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 278 ctcctagagtgatgtcttgctccacatctttgtaggcgtagttgcaggaataatggatgc 337
|||||||||| ||||||||||| |||||||||||||| || |||||||| ||| ||||
Sbjct: 1592071 ctcctagagtaatgtcttgctcaacatctttgtaggcataattgcaggacagatgtatgc 1592012
Query: 338 tctcaatcgcatag 351
||||||| ||||||
Sbjct: 1592011 tctcaattgcatag 1591998
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 2720325 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 2720384
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 2720385 tgctggtgacgagaattatggc 2720406
Score = 69.9 bits (35), Expect = 3e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 427 ttcatcttgagagcctctaccatggtatccatgctcttgttgtagaagtccttgatcgcc 486
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1591755 ttcatcttgagagcctccaccatggtatccaagcttctgttatagaagtccttcatggcc 1591696
Query: 487 gtatcaataatgctg 501
|| || || ||||||
Sbjct: 1591695 gtctctatgatgctg 1591681
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1590297 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1590253
>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBb0004A06, complete sequence
Length = 153510
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 72575 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 72634
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 72635 aatatcaggctctccgtcaggtt 72657
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 72799 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 72858
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 72859 gtgacgagagttatggcaatccc 72881
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 1981846 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 1981905
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 1981906 aatatcaggctctccgtcaggtt 1981928
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1982070 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 1982129
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 1982130 gtgacgagagttatggcaatccc 1982152
>gb|AACV01020755.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020755, whole
genome shotgun sequence
Length = 4210
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 1955 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 2014
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 2015 aatatcaggctctccgtcaggtt 2037
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2179 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 2238
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 2239 gtgacgagagttatggcaatccc 2261
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 1986852 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 1986911
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 1986912 aatatcaggctctccgtcaggtt 1986934
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1987076 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 1987135
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 1987136 gtgacgagagttatggcaatccc 1987158
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 2068799 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 2068858
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 2068859 aatatcaggctctccgtcaggtt 2068881
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2069023 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 2069082
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 2069083 gtgacgagagttatggcaatccc 2069105
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 2068799 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 2068858
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 2068859 aatatcaggctctccgtcaggtt 2068881
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2069023 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 2069082
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 2069083 gtgacgagagttatggcaatccc 2069105
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 12561296 atagccccgacgacgcacatcccttgctggtgacgagaat 12561257
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 882 cagcgcctgcaccgccgccgccgcct 907
||||||| ||||||||||||||||||
Sbjct: 16990718 cagcgccagcaccgccgccgccgcct 16990743
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 1981846 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 1981905
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 1981906 aatatcaggctctccgtcaggtt 1981928
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1982070 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 1982129
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 1982130 gtgacgagagttatggcaatccc 1982152
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 13541991 atagccccgacgacgcacatcccttgctggtgacgagaat 13541952
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 882 cagcgcctgcaccgccgccgccgcct 907
||||||| ||||||||||||||||||
Sbjct: 18146501 cagcgccagcaccgccgccgccgcct 18146526
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 568 tcgtcatcttcgaagcctacgtgcagcggctggtggacgtcgccgacgaagtgtgccagg 627
||||| || |||||||| |||||||||||||| || |||||||||| |||||| ||||||
Sbjct: 1981797 tcgtcttcctcgaagccgacgtgcagcggctgttgcacgtcgccgatgaagtgggccagg 1981856
Query: 628 aacatcaggctctccgtcaggtt 650
|| ||||||||||||||||||||
Sbjct: 1981857 aatatcaggctctccgtcaggtt 1981879
Score = 93.7 bits (47), Expect = 2e-016
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatagccccgacgacgc-acatcccttgctg 728
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1982021 tagctgtagagctggtcagtgtagttgttgatagccccgacgatgcaacatcccttgctg 1982080
Query: 729 gccacgagaattgtggcagtccc 751
| |||||| || ||||| ||||
Sbjct: 1982081 gtgacgagagttatggcaatccc 1982103
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 13549333 atagccccgacgacgcacatcccttgctggtgacgagaat 13549294
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 882 cagcgcctgcaccgccgccgccgcct 907
||||||| ||||||||||||||||||
Sbjct: 18155754 cagcgccagcaccgccgccgccgcct 18155779
>gb|D48949.1|D48949 RICS15541A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 440
Score = 71.9 bits (36), Expect = 7e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 185 caccaaatatccgattaagtaccaacgccaatctgattccagcctgcgctaacctcttct 244
||||||||||||| || |||| ||||||||||||||| || || || |||| ||||||||
Sbjct: 84 caccaaatatccggttcagtatcaacgccaatctgatgccggcntgtgctagcctcttct 25
Query: 245 ccacaatcgggtacc 259
|||| || |||||||
Sbjct: 24 ccacgattgggtacc 10
>gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 5', mRNA sequence
Length = 835
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 447 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 401
Score = 61.9 bits (31), Expect = 7e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
|||||||| |||||||| || || |||| | ||||||||||||||| |||||| |||
Sbjct: 157 caccgccgtcgccgcctccttcgtcaggaaaccctcggcgatcttgcacaccatgtagtg 98
Query: 951 gccctcctttccccacgcg 969
||||||||| |||||||||
Sbjct: 97 gccctccttgccccacgcg 79
>gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 3', mRNA sequence
Length = 806
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 650 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 696
>gb|CB666818.1|CB666818 OSJNEd13N23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N23 5', mRNA sequence
Length = 816
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 526 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 480
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||| ||||| |||||||||
Sbjct: 118 ctcggcgatcttgcacaccatgtagtggccgtccttgccccacgcg 73
>gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 5', mRNA sequence
Length = 804
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 448 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 402
Score = 61.9 bits (31), Expect = 7e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
|||||||| |||||||| || || |||| | ||||||||||||||| |||||| |||
Sbjct: 158 caccgccgtcgccgcctccttcgtcaggaaaccctcggcgatcttgcacaccatgtagtg 99
Query: 951 gccctcctttccccacgcg 969
||||||||| |||||||||
Sbjct: 98 gccctccttgccccacgcg 80
>gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 3', mRNA sequence
Length = 818
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 686 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 732
>gb|CF308558.1|CF308558 ABF--02-G21.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-G21, mRNA sequence
Length = 664
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 472 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 426
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
|||||||| |||||||| || || |||| | ||||||||||||||| |||||| |||
Sbjct: 182 caccgccgtcgccgcctccttcgtcaggaaaccctcggcgatcttgcacaccatgtagtg 123
Query: 951 gccctcctttccccacgcg 969
||||| ||| |||||||||
Sbjct: 122 gccctacttgccccacgcg 104
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
insert sequence
Length = 1146
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 469 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 423
Score = 61.9 bits (31), Expect = 7e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
|||||||| |||||||| || || |||| | ||||||||||||||| |||||| |||
Sbjct: 179 caccgccgtcgccgcctccttcgtcaggaaaccctcggcgatcttgcacaccatgtagtg 120
Query: 951 gccctcctttccccacgcg 969
||||||||| |||||||||
Sbjct: 119 gccctccttgccccacgcg 101
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0434B04
Length = 167029
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 113045 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 113104
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 113105 tgctggtgacgagaattatggc 113126
>gb|AACV01000194.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000194, whole
genome shotgun sequence
Length = 30874
Score = 69.9 bits (35), Expect = 3e-009
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 670 tagctgtagagctggtccgtgtagttgttgatag------ccccgacgacgcacatccct 723
|||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 8666 tagctgtagagctggtccctgtagttgtttataggcatagccccggcgacgcacatccct 8725
Query: 724 tgctggccacgagaattgtggc 745
|||||| ||||||||| ||||
Sbjct: 8726 tgctggtgacgagaattatggc 8747
>gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010593, whole
genome shotgun sequence
Length = 24024
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 13265 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 13219
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 11839 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 11794
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 873
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 443 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 397
Score = 61.9 bits (31), Expect = 7e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 891 caccgccgccgccgccttctccgacaggtacttctcggcgatcttgcagaccatgatgtg 950
|||||||| |||||||| || || |||| | ||||||||||||||| |||||| |||
Sbjct: 153 caccgccgtcgccgcctccttcgtcaggaaaccctcggcgatcttgcacaccatgtagtg 94
Query: 951 gccctcctttccccacgcg 969
||||||||| |||||||||
Sbjct: 93 gccctccttgccccacgcg 75
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 684417 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 684371
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 682991 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 682946
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgagt 1011
||||||||||||||||||||||
Sbjct: 820254 gaggaggaggaggaagacgagt 820275
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 10893658 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 10893612
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 10892232 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 10892187
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgagt 1011
||||||||||||||||||||||
Sbjct: 11013467 gaggaggaggaggaagacgagt 11013488
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 30037757 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 30037711
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 30036331 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 30036286
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||| ||||| ||||||||
Sbjct: 14768174 atagccccgacgacgcacatccctcgctggtgacgagaat 14768135
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 676 tagagctggtccgtgtagttgttgata 702
||||||||||||||| |||||||||||
Sbjct: 14768447 tagagctggtccgtgcagttgttgata 14768421
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgagt 1011
||||||||||||||||||||||
Sbjct: 30157566 gaggaggaggaggaagacgagt 30157587
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
complete sequence
Length = 151506
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 61650 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 61604
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 60224 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 60179
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 33289389 ggctggtgaacgtcgccgacgaagtgtgccaagaacatcaagctctc 33289343
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgcg 969
||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 33287963 ctcggcgatcttgcacaccatgtagtggccctccttgccccacgcg 33287918
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||| ||||| ||||||||
Sbjct: 17743840 atagccccgacgacgcacatccctcgctggtgacgagaat 17743801
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 676 tagagctggtccgtgtagttgttgata 702
||||||||||||||| |||||||||||
Sbjct: 17744113 tagagctggtccgtgcagttgttgata 17744087
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgagt 1011
||||||||||||||||||||||
Sbjct: 33425226 gaggaggaggaggaagacgagt 33425247
>gb|AACV01000124.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000124, whole
genome shotgun sequence
Length = 1546
Score = 65.9 bits (33), Expect = 4e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 924 ctcggcgatcttgcagaccatgatgtggccctcctttccccacgc 968
|||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 1518 ctcggcgatcttgcagacgatgatgtggccctgcttgccccacgc 1474
>gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC nbxb0049A03 chromosome 10,
complete sequence
Length = 162101
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 10993 atagccccgacgacgcacatcccttgctggtgacgagaat 10954
>gb|AACV01021520.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021520, whole
genome shotgun sequence
Length = 95050
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 39857 atagccccgacgacgcacatcccttgctggtgacgagaat 39818
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 274866 atagccccgacgacgcacatcccttgctggtgacgagaat 274827
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 63.9 bits (32), Expect = 2e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 1695502 atagccccgacgacgcacatcccttgctggtgacgagaat 1695463
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 882 cagcgcctgcaccgccgccgccgcct 907
||||||| ||||||||||||||||||
Sbjct: 6124924 cagcgccagcaccgccgccgccgcct 6124949
>gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N23 3', mRNA sequence
Length = 808
Score = 61.9 bits (31), Expect = 7e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 595 ggctggtggacgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||| || ||||||||||||||||||| |||||||| ||||||
Sbjct: 684 ggctggtgaacctcgccgacgaagtgtgccaagaacatcaagctctc 730
>gb|CF291978.1|CF291978 14ROOT--02-K02.g1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--02-K02, mRNA sequence
Length = 301
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 604 acgtcgccgacgaagtgtgccaggaacatcaggctctc 641
|||||||||||||||||||||| |||||||| ||||||
Sbjct: 297 acgtcgccgacgaagtgtgccaagaacatcaagctctc 260
>gb|AACV01009495.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009495,
whole genome shotgun sequence
Length = 14913
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||| ||||| ||||||||
Sbjct: 439 atagccccgacgacgcacatccctcgctggtgacgagaat 400
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 676 tagagctggtccgtgtagttgttgata 702
||||||||||||||| |||||||||||
Sbjct: 712 tagagctggtccgtgcagttgttgata 686
>ref|NT_079858.2| Oryza sativa (japonica cultivar-group)
Length = 2468003
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||| ||||| ||||||||
Sbjct: 994272 atagccccgacgacgcacatccctcgctggtgacgagaat 994233
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 676 tagagctggtccgtgtagttgttgata 702
||||||||||||||| |||||||||||
Sbjct: 994545 tagagctggtccgtgcagttgttgata 994519
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 700 atagccccgacgacgcacatcccttgctggccacgagaat 739
|||||||||||||||||||||||| ||||| ||||||||
Sbjct: 7420812 atagccccgacgacgcacatccctcgctggtgacgagaat 7420773
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 676 tagagctggtccgtgtagttgttgata 702
||||||||||||||| |||||||||||
Sbjct: 7421085 tagagctggtccgtgcagttgttgata 7421059
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,945,660
Number of Sequences: 438736
Number of extensions: 2945660
Number of successful extensions: 120306
Number of sequences better than 0.5: 134
Number of HSP's better than 0.5 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108253
Number of HSP's gapped (non-prelim): 12016
length of query: 1074
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1053
effective length of database: 2,791,206,460
effective search space: 2939140402380
effective search space used: 2939140402380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)