BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716352.2.1
(990 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|D22937.1|D22937 RICC1834A Rice callus Oryza sativa (japo... 52 6e-004
gb|AU062910.1|AU062910 AU062910 Rice callus Oryza sativa (j... 52 6e-004
gb|AU093717.1|AU093717 AU093717 Rice callus Oryza sativa (j... 52 6e-004
gb|CF292942.1|CF292942 30DGS--01-P03.g1 Rice leaf plasmid c... 52 6e-004
gb|CF314542.1|CF314542 HD--03-B18.b1 OsHDAC1-overexpressing... 52 6e-004
gb|CF314822.1|CF314822 HD--03-I03.b1 OsHDAC1-overexpressing... 52 6e-004
gb|CF319533.1|CF319533 HD--10-B04.b1 OsHDAC1-overexpressing... 52 6e-004
dbj|AK059446.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
dbj|AK121668.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
ref|NM_189944.1| Oryza sativa (japonica cultivar-group), p... 52 6e-004
emb|AJ002894.1|OSAJ2894 Oryza sativa mRNA for glycine rich ... 52 6e-004
gb|AU062952.1|AU062952 AU062952 Rice callus Oryza sativa (j... 50 0.002
gb|AC087595.1|AC087595 Oryza sativa (japonica cultivar-grou... 50 0.002
gb|AACV01002922.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 50 0.002
dbj|AP003433.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP003451.4| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CF292941.1|CF292941 30DGS--01-P03.b1 Rice leaf plasmid c... 46 0.036
gb|CF319534.1|CF319534 HD--10-B04.g1 OsHDAC1-overexpressing... 46 0.036
gb|CV734361.1|CV734361 FLO--09-L01.g1 Rice flower lambda ph... 46 0.036
gb|CF282328.1|CF282328 14ETL--09-M18.b1 Rice etiolated leaf... 44 0.14
>gb|D22937.1|D22937 RICC1834A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1834_1A, mRNA sequence
Length = 427
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 192 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 133
Query: 680 agagcc 685
||||||
Sbjct: 132 agagcc 127
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 103 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 59
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 308 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 250
>gb|AU062910.1|AU062910 AU062910 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51549_1A, mRNA sequence
Length = 392
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 195 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 136
Query: 680 agagcc 685
||||||
Sbjct: 135 agagcc 130
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 106 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 62
>gb|AU093717.1|AU093717 AU093717 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1651, mRNA sequence
Length = 454
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 179 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 120
Query: 680 agagcc 685
||||||
Sbjct: 119 agagcc 114
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 90 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 46
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 295 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 237
>gb|CF292942.1|CF292942 30DGS--01-P03.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-P03, mRNA sequence
Length = 387
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 276 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 217
Query: 680 agagcc 685
||||||
Sbjct: 216 agagcc 211
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 187 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 143
>gb|CF314542.1|CF314542 HD--03-B18.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-B18, mRNA sequence
Length = 448
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 207 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 148
Query: 680 agagcc 685
||||||
Sbjct: 147 agagcc 142
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 118 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 74
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 323 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 265
>gb|CF314822.1|CF314822 HD--03-I03.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-I03, mRNA sequence
Length = 448
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 206 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 147
Query: 680 agagcc 685
||||||
Sbjct: 146 agagcc 141
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 117 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 73
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 322 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 264
>gb|CF319533.1|CF319533 HD--10-B04.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--10-B04, mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 272 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 213
Query: 680 agagcc 685
||||||
Sbjct: 212 agagcc 207
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 183 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 139
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 388 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 330
>dbj|AK059446.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A07, full
insert sequence
Length = 874
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 206 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 147
Query: 680 agagcc 685
||||||
Sbjct: 146 agagcc 141
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 117 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 73
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 322 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 264
>dbj|AK121668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G16, full
insert sequence
Length = 809
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 226 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 167
Query: 680 agagcc 685
||||||
Sbjct: 166 agagcc 161
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 137 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 93
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 342 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 284
>ref|NM_189944.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 453
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 132 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 73
Query: 680 agagcc 685
||||||
Sbjct: 72 agagcc 67
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 248 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 190
Score = 46.1 bits (23), Expect = 0.036
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccat 751
|||||||||| || | || ||| ||||||||||||||||||||
Sbjct: 43 cactgtgcctgaggaagctaccgagcttgttgaaggccgccat 1
>emb|AJ002894.1|OSAJ2894 Oryza sativa mRNA for glycine rich RNA-binding protein 2 (OsGRP2)
Length = 705
Score = 52.0 bits (26), Expect = 6e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||||||| ||||| ||
Sbjct: 180 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcagggga 121
Query: 680 agagcc 685
||||||
Sbjct: 120 agagcc 115
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 91 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 47
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 296 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 238
>gb|AU062952.1|AU062952 AU062952 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C51837_1A, mRNA sequence
Length = 397
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 106 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 62
Score = 48.1 bits (24), Expect = 0.009
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| | || ||||||||||||| ||||| ||
Sbjct: 196 aagaccaccaacnaaaagcttggtggacatcanacgagcagcattgaacatggcagggga 137
Query: 680 agagcc 685
||||||
Sbjct: 136 agagcc 131
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 312 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 254
>gb|AC087595.1|AC087595 Oryza sativa (japonica cultivar-group) chromosome 1 clone
OSJNBa0034K07, *** SEQUENCING IN PROGRESS ***, 2 ordered
pieces
Length = 153479
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 24485 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 24441
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 24571 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 24512
Query: 683 gcc 685
|||
Sbjct: 24511 gcc 24509
>gb|AACV01002922.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002922, whole
genome shotgun sequence
Length = 27445
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 7198 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 7154
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 7284 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 7225
Query: 683 gcc 685
|||
Sbjct: 7224 gcc 7222
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 40029193 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 40029149
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 40029279 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 40029220
Query: 683 gcc 685
|||
Sbjct: 40029219 gcc 40029217
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 14476576 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 14476532
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 14476662 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 14476603
Query: 683 gcc 685
|||
Sbjct: 14476602 gcc 14476600
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0004D12
Length = 138136
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 129231 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 129187
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 129317 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 129258
Query: 683 gcc 685
|||
Sbjct: 129257 gcc 129255
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0413C03
Length = 162161
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 39974 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 39930
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 40060 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 40001
Query: 683 gcc 685
|||
Sbjct: 40000 gcc 39998
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 14223528 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 14223484
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 14223614 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 14223555
Query: 683 gcc 685
|||
Sbjct: 14223554 gcc 14223552
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 39425249 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 39425205
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 39425335 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 39425276
Query: 683 gcc 685
|||
Sbjct: 39425275 gcc 39425273
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 709 cactgtgccttagaaggccaccaagcttgttgaaggccgccattg 753
|||||||||| || | || ||| ||||||||||||||||||||||
Sbjct: 39948523 cactgtgcctgaggaagctaccgagcttgttgaaggccgccattg 39948479
Score = 46.1 bits (23), Expect = 0.036
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 623 accaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggagaaga 682
|||||||| || |||||||| ||||| || || ||||||||||||| ||||| |||||
Sbjct: 39948609 accaccaacgaaaagcttggtggacatcagacgagcagcattgaacatggcaggggaaga 39948550
Query: 683 gcc 685
|||
Sbjct: 39948549 gcc 39948547
>gb|CF292941.1|CF292941 30DGS--01-P03.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--01-P03, mRNA sequence
Length = 583
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 467 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 525
>gb|CF319534.1|CF319534 HD--10-B04.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--10-B04, mRNA sequence
Length = 601
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 439 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 497
>gb|CV734361.1|CV734361 FLO--09-L01.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-L01,
mRNA sequence
Length = 520
Score = 46.1 bits (23), Expect = 0.036
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 504 acaaagccaaagcctcttgacctcccagtctccctgtctgtgatcaccctcgcttcagt 562
||||||||||| ||||||||||| |||| || ||||| ||||||||| ||||||||
Sbjct: 420 acaaagccaaaccctcttgaccttccagattctctgtcattgatcacccgagcttcagt 362
Score = 44.1 bits (22), Expect = 0.14
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||| ||| ||||| ||
Sbjct: 304 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgtacatggcagggga 245
Query: 680 agagcc 685
||||||
Sbjct: 244 agagcc 239
>gb|CF282328.1|CF282328 14ETL--09-M18.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--09-M18, mRNA sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.14
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 620 aagaccaccaataaatagcttggtagacatgagccgtgcagcattgaacactgcaggaga 679
||||||||||| || |||||||| ||||| || || ||||||||| ||| ||||| ||
Sbjct: 196 aagaccaccaacgaaaagcttggtggacatcagacgagcagcattgtacatggcagggga 137
Query: 680 agagcc 685
||||||
Sbjct: 136 agagcc 131
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,127,231
Number of Sequences: 438736
Number of extensions: 1127231
Number of successful extensions: 8356
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8212
Number of HSP's gapped (non-prelim): 144
length of query: 990
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 969
effective length of database: 2,791,206,460
effective search space: 2704679059740
effective search space used: 2704679059740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)