BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_190315.1| Oryza sativa (japonica cultivar-group), p... 297 5e-078
ref|NM_190316.1| Oryza sativa (japonica cultivar-group), p... 208 3e-051
gb|AU173984.1|AU173984 AU173984 Rice green shoot Oryza sati... 165 4e-038
gb|AU223114.1|AU223114 AU223114 Rice shoot Oryza sativa (ja... 147 1e-032
dbj|AP003791.4| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|AACV01002867.1| Oryza sativa (japonica cultivar-group) c... 133 2e-028
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 133 2e-028
dbj|AP003313.3| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
dbj|AP006757.2| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 133 2e-028
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 133 2e-028
gb|AU223163.1|AU223163 AU223163 Rice shoot Oryza sativa (ja... 115 4e-023
gb|AU197839.1|AU197839 AU197839 Rice green shoot Oryza sati... 111 6e-022
gb|AQ576529.1|AQ576529 nbxb0089G14r CUGI Rice BAC Library O... 80 2e-012
gb|AU108438.1|AU108438 AU108438 Rice shoot Oryza sativa (ja... 62 5e-007
gb|CZ552845.1|CZ552845 M0006170 AS_TRIM_TDNA_B1 Oryza sativ... 56 3e-005
gb|AU174314.1|AU174314 AU174314 Rice shoot Oryza sativa (ja... 52 4e-004
gb|AC098693.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AACV01005814.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
gb|AACV01016881.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
ref|XM_479281.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.43
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 42 0.43
dbj|AP005292.5| Oryza sativa (japonica cultivar-group) geno... 42 0.43
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.43
gb|AC140005.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.43
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
>ref|NM_190315.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1629
Score = 297 bits (150), Expect = 5e-078
Identities = 370/444 (83%)
Strand = Plus / Plus
Query: 120 ggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaaa 179
||||| || ||||| || ||||| || |||||||| || || ||||||||||||||||||
Sbjct: 1186 ggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaaa 1245
Query: 180 accggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaaa 239
|| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 1246 acaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaag 1305
Query: 240 gagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaat 299
||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |
Sbjct: 1306 gagttgataaagtacaagggataccaggtacctccagcagaactggagcatattctgcag 1365
Query: 300 tctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaa 359
|| ||||||| ||| || || |||||||| || |||||||| ||||| || ||| ||
Sbjct: 1366 tcccatcctggaatcgctgatgcggcagttatcccatatccagatgaagaagctggggaa 1425
Query: 360 ctcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatg 419
|| ||||||||||| ||||| ||| ||||||| ||||| ||||| || |||||||||||
Sbjct: 1426 ctaccaatggctttcatagtaaggcaaccaggttcaaatattaccaaggaacaagtcatg 1485
Query: 420 gatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttct 479
|||| || || |||||||| || || |||||||| || || |||||||| ||||| ||
Sbjct: 1486 gattatgtcgcaaaacaggttgcgccatacaagaaggtgcgacgagtggcttttgtcact 1545
Query: 480 gcaattcccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcangccgtg 539
||||| || ||||||||||| ||||||||| | |||||||||||||| |||| ||| ||
Sbjct: 1546 gcaataccaaaatcgcctgcagggaagatccttcggcgggagcttgtgcagcaggccctg 1605
Query: 540 tccatgggtacctncaagctttga 563
|| |||||| ||| ||||||||||
Sbjct: 1606 tcgatgggtgcctccaagctttga 1629
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccgg 58
|||||||||||||||| ||||| ||| |||| ||||| || ||||||||||||||
Sbjct: 1132 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccgg 1187
>ref|NM_190316.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1740
Score = 208 bits (105), Expect = 3e-051
Identities = 300/365 (82%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 1343 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 1402
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaac 282
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| || || || |
Sbjct: 1403 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtaccaccagctgagc 1462
Query: 283 tggagcatatcctgaattctcatcctgatatcatggacgcagcagttattccttatccag 342
||||||| || || | |||| |||||| ||| || || || ||| | || ||||| |
Sbjct: 1463 tggagcacattctacagtctcgtcctgaaatcgctgatgctgctgttgtcccatatcctg 1522
Query: 343 acgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaacctta 402
| ||||| || |||||||| |||||||||||| |||||||| |||| || || ||||||
Sbjct: 1523 atgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgcatacctta 1582
Query: 403 ccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtc 462
||||||||||||||||| | | ||| |||||||| || || |||||||||||||| || |
Sbjct: 1583 ccgagcaacaagtcatgaactgcgtcgctaaacatgttgcgccctacaagaaagtgcgcc 1642
Query: 463 gagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggagc 522
| ||||| ||||| |||||| || ||||| ||||| ||||||||| || | || ||||
Sbjct: 1643 gtgtggcttttgtcaatgcaataccgaaatctcctgcagggaagatcctgagacgagagc 1702
Query: 523 ttgta 527
|||||
Sbjct: 1703 ttgta 1707
>gb|AU173984.1|AU173984 AU173984 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10092, mRNA sequence
Length = 468
Score = 165 bits (83), Expect = 4e-038
Identities = 201/241 (83%)
Strand = Plus / Plus
Query: 324 gcagttattccttatccagacgaagacgccgggcaactcccaatggcttttatagtgagg 383
|||||||| || |||||||| ||||| || ||| |||| ||||||||||| ||||| |||
Sbjct: 16 gcagttatcccatatccagatgaagaagctggggaactaccaatggctttcatagtaagg 75
Query: 384 aaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgca 443
||||||| ||||| ||||| || ||||||||||||||| || || |||||||| ||
Sbjct: 76 caaccaggttcaaatattaccaaggaacaagtcatggattatgtcgcaaaacaggttgcg 135
Query: 444 ccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcgcctgctggg 503
|| |||||||| || || |||||||| ||||| ||||||| || ||||||||||| |||
Sbjct: 136 ccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatcgcctgcaggg 195
Query: 504 aagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctncaagctttga 563
|||||| | |||||||||||||| |||| ||| |||| |||||| ||| ||||||||||
Sbjct: 196 aagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttga 255
Query: 564 a 564
|
Sbjct: 256 a 256
>gb|AU223114.1|AU223114 AU223114 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3837, mRNA sequence
Length = 455
Score = 147 bits (74), Expect = 1e-032
Identities = 183/220 (83%)
Strand = Plus / Plus
Query: 345 gaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaaccttacc 404
||||| || ||| |||| ||||||||||| ||||| ||| ||||||| ||||| |||||
Sbjct: 4 gaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttcaaatattacc 63
Query: 405 gagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcga 464
|| ||||||||||||||| || || |||||||| || || |||||||| || || |||
Sbjct: 64 aaggaacaagtcatggattatgtcgcaaaacaggttgcgccatacaagaaggtgcgacga 123
Query: 465 gtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggagctt 524
||||| ||||| ||||||| || ||||||||||| ||||||||| | ||||||||||||
Sbjct: 124 gtggcttttgtcactgcaataccaaaatcgcctgcagggaagatccttcggcgggagctt 183
Query: 525 gtagagcangccgtgtccatgggtacctncaagctttgaa 564
|| |||| ||| |||| |||||| ||| |||||||||||
Sbjct: 184 gtgcagcaggccctgtcgatgggtgcctccaagctttgaa 223
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1065G12
Length = 165006
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 50342 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 50401
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 50402 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 50461
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 50462 ggagttgataaagtacaagggataccaggta 50492
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 55351 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 55410
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 55411 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 55458
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 49242 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 49301
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 49302 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 49360
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 54658 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 54717
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 54718 tctggatccgaggcccagtcgtcatgaaagg 54748
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 51318 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 51377
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 51378 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 51437
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 51438 caagctttgaa 51448
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 55787 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 55846
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 55847 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 55887
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 50762 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 50821
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 50822 aatattaccaaggaacaagtcatggatt 50849
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 56090 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 56149
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 56150 cctgcagggaagatcctgagacgagagcttgta 56182
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 50600 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 50646
>gb|AACV01002867.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002867, whole
genome shotgun sequence
Length = 33582
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 3084 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 3143
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 3144 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 3203
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 3204 ggagttgataaagtacaagggataccaggta 3234
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 8093 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 8152
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 8153 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 8200
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 1984 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 2043
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 2044 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 2102
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 7400 aggcgaagatcgtcgacacggccaccggcgaggtgctggggcccgggcggcgcggcgagc 7459
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 7460 tctggatccgaggcccagtcgtcatgaaagg 7490
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 4060 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 4119
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 4120 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 4179
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 4180 caagctttgaa 4190
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 8529 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 8588
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 8589 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 8629
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 3504 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 3563
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 3564 aatattaccaaggaacaagtcatggatt 3591
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 8832 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 8891
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 8892 cctgcagggaagatcctgagacgagagcttgta 8924
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 3342 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 3388
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 39329306 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 39329365
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 39329366 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 39329425
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 39329426 ggagttgataaagtacaagggataccaggta 39329456
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 39334315 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 39334374
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 39334375 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 39334422
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 39328206 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 39328265
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 39328266 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 39328324
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 39333622 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 39333681
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 39333682 tctggatccgaggcccagtcgtcatgaaagg 39333712
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 39330282 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 39330341
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 39330342 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 39330401
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 39330402 caagctttgaa 39330412
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 39334751 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 39334810
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 39334811 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 39334851
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 39329726 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 39329785
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 39329786 aatattaccaaggaacaagtcatggatt 39329813
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 39335054 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 39335113
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 39335114 cctgcagggaagatcctgagacgagagcttgta 39335146
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 39329564 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 39329610
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 13776689 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 13776748
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 13776749 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 13776808
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 13776809 ggagttgataaagtacaagggataccaggta 13776839
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 13781698 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 13781757
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 13781758 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 13781805
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 13775589 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 13775648
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 13775649 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 13775707
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 13781005 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 13781064
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 13781065 tctggatccgaggcccagtcgtcatgaaagg 13781095
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 13777665 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 13777724
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 13777725 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 13777784
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 13777785 caagctttgaa 13777795
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 13782134 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 13782193
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 13782194 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 13782234
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 13777109 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 13777168
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 13777169 aatattaccaaggaacaagtcatggatt 13777196
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 13782437 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 13782496
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 13782497 cctgcagggaagatcctgagacgagagcttgta 13782529
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 13776947 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 13776993
>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0035F12
Length = 153439
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 124396 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 124455
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 124456 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 124515
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 124516 ggagttgataaagtacaagggataccaggta 124546
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 129405 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 129464
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 129465 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 129512
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 123296 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 123355
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 123356 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 123414
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 128712 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 128771
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 128772 tctggatccgaggcccagtcgtcatgaaagg 128802
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 125372 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 125431
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 125432 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 125491
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 125492 caagctttgaa 125502
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 129841 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 129900
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 129901 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 129941
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 124816 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 124875
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 124876 aatattaccaaggaacaagtcatggatt 124903
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 130144 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 130203
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 130204 cctgcagggaagatcctgagacgagagcttgta 130236
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 124654 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 124700
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0551C06
Length = 149829
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 29882 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 29941
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 29942 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 30001
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 30002 ggagttgataaagtacaagggataccaggta 30032
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 34891 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 34950
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 34951 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 34998
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 28782 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 28841
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 28842 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 28900
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 34198 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 34257
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 34258 tctggatccgaggcccagtcgtcatgaaagg 34288
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 30858 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 30917
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 30918 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 30977
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 30978 caagctttgaa 30988
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 35327 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 35386
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 35387 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 35427
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 30302 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 30361
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 30362 aatattaccaaggaacaagtcatggatt 30389
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 35630 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 35689
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 35690 cctgcagggaagatcctgagacgagagcttgta 35722
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 30140 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 30186
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 13503857 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 13503916
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 13503917 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 13503976
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 13503977 ggagttgataaagtacaagggataccaggta 13504007
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 13508866 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 13508925
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 13508926 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 13508973
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 13502757 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 13502816
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 13502817 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 13502875
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 13508173 aggcgaagatcgtcgacacggccaccggcgaggtgctggggcccgggcggcgcggcgagc 13508232
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 13508233 tctggatccgaggcccagtcgtcatgaaagg 13508263
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 13504833 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 13504892
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 13504893 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 13504952
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 13504953 caagctttgaa 13504963
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 13509302 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 13509361
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 13509362 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 13509402
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 13504277 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 13504336
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 13504337 aatattaccaaggaacaagtcatggatt 13504364
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 13509605 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 13509664
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 13509665 cctgcagggaagatcctgagacgagagcttgta 13509697
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 13504115 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 13504161
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 38705578 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 38705637
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 38705638 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 38705697
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 38705698 ggagttgataaagtacaagggataccaggta 38705728
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 38710587 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 38710646
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 38710647 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 38710694
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 38704478 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 38704537
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 38704538 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 38704596
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 38709894 aggcgaagatcgtcgacacggccaccggcgaggtgctggggcccgggcggcgcggcgagc 38709953
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 38709954 tctggatccgaggcccagtcgtcatgaaagg 38709984
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 38706554 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 38706613
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 38706614 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 38706673
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 38706674 caagctttgaa 38706684
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 38711023 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 38711082
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 38711083 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 38711123
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 38705998 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 38706057
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 38706058 aatattaccaaggaacaagtcatggatt 38706085
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 38711326 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 38711385
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 38711386 cctgcagggaagatcctgagacgagagcttgta 38711418
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 38705836 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 38705882
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 133 bits (67), Expect = 2e-028
Identities = 130/151 (86%)
Strand = Plus / Plus
Query: 119 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 178
|||||| || ||||| || ||||| || |||||||| || || |||||||||||||||||
Sbjct: 39248636 aggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaa 39248695
Query: 179 aaccggtgacctatgctacttcaacgaggatgggttactctacattgttgatcggttgaa 238
||| |||||||| ||||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 39248696 aacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaa 39248755
Query: 239 agagttgataaagtacaagggatatcaggta 269
||||||||||||||||||||||| ||||||
Sbjct: 39248756 ggagttgataaagtacaagggataccaggta 39248786
Score = 119 bits (60), Expect = 2e-024
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 163 cagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctaca 222
|||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||
Sbjct: 39253645 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 39253704
Query: 223 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 270
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 39253705 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 39253752
Score = 109 bits (55), Expect = 2e-021
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 3 tcggtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgag 62
|||||||||||||||| ||||| ||| |||| ||||| || |||||||||||||| |||
Sbjct: 39247536 tcggtcgggaagctggggtcgcatttgcaggctaagattgtagatccctccaccggtgag 39247595
Query: 63 gtgcttgggccagggcagcgcggcgagctctgggtccgaggaccagtcgtcatgaaagg 121
| || || |||||||||||||||||||| |||||| |||| ||| |||||||||||||
Sbjct: 39247596 gccctcggaccagggcagcgcggcgagctttgggtcagaggcccaatcgtcatgaaagg 39247654
Score = 101 bits (51), Expect = 5e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 31 aggcaaagatcgtcgatccctccaccggcgaggtgcttgggccagggcagcgcggcgagc 90
|||| ||||||||||| | |||||||||||||||| ||||| |||| |||||||||||
Sbjct: 39252952 aggcgaagatcgtcgacacggccaccggcgaggtgctggggccggggcggcgcggcgagc 39253011
Query: 91 tctgggtccgaggaccagtcgtcatgaaagg 121
||||| ||||||| |||||||||||||||||
Sbjct: 39253012 tctggatccgaggcccagtcgtcatgaaagg 39253042
Score = 97.6 bits (49), Expect = 8e-018
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 39249612 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 39249671
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggtacctn 553
|||||| ||||||||| | |||||||||||||| |||| ||| |||| |||||| |||
Sbjct: 39249672 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 39249731
Query: 554 caagctttgaa 564
|||||||||||
Sbjct: 39249732 caagctttgaa 39249742
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 39254081 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 39254140
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 436
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 39254141 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 39254181
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 39249056 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 39249115
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 39249116 aatattaccaaggaacaagtcatggatt 39249143
Score = 50.1 bits (25), Expect = 0.002
Identities = 76/93 (81%)
Strand = Plus / Plus
Query: 435 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatcg 494
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 39254384 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 39254443
Query: 495 cctgctgggaagatcttgcggcgggagcttgta 527
||||| ||||||||| || | || |||||||||
Sbjct: 39254444 cctgcagggaagatcctgagacgagagcttgta 39254476
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 39248894 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 39248940
>gb|AU223163.1|AU223163 AU223163 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4303, mRNA sequence
Length = 465
Score = 115 bits (58), Expect = 4e-023
Identities = 145/174 (83%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 5 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 64
Query: 396 aaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaa 455
|| ||||| || ||||||||||||||| || || |||||||| || || ||||||||
Sbjct: 65 aatattaccaaggaacaagtcatggattatgtcgcaaaacaggttgcgccatacaagaag 124
Query: 456 gttcgtcgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatc 509
|| || |||||||| ||||| ||||||| || ||||||||||| |||||||||
Sbjct: 125 gtgcgacgagtggcttttgtcactgcaataccaaaatcgcctgcagggaagatc 178
>gb|AU197839.1|AU197839 AU197839 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10094, mRNA sequence
Length = 434
Score = 111 bits (56), Expect = 6e-022
Identities = 164/202 (81%)
Strand = Plus / Plus
Query: 363 ccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggat 422
||||||||||| ||||| ||| ||||||| || || | || || ||||||||||||||
Sbjct: 21 ccaatggctttcatagtaaggcaaccaggttccaatatncccaaggaacaagtcatggat 80
Query: 423 ttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgca 482
| || | |||||||| || || |||||||| || || |||||||| ||||| |||||
Sbjct: 81 tatgtcncaaaacaggttgcgccatacaagaaggtgcgacgagtggcttttgtcnctgca 140
Query: 483 attcccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtcc 542
|| || ||||||||||| ||||||||| | |||||||||||||| |||| ||| ||||
Sbjct: 141 ataccaaaatcgcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcg 200
Query: 543 atgggtacctncaagctttgaa 564
|||||| || |||||||||||
Sbjct: 201 atgggtgccnccaagctttgaa 222
>gb|AQ576529.1|AQ576529 nbxb0089G14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0089G14r, DNA sequence
Length = 736
Score = 79.8 bits (40), Expect = 2e-012
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 434 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaattcccaaatc 493
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 120 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 61
Query: 494 gcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatgggt 548
|||||| ||||||||| | |||||||||||||| |||| ||| |||| ||||||
Sbjct: 60 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggt 6
Score = 46.1 bits (23), Expect = 0.028
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 336 tatccagacgaagacgccgggcaac-tcccaatggcttttatagtgaggaaaccagggtc 394
|||||||| ||||| || ||| ||| ||||||||||||| ||||| ||| ||||||| ||
Sbjct: 675 tatccagatgaagaagctggggaacctcccaatggctttcatagtaaggcaaccaggttc 616
Query: 395 aaa 397
|||
Sbjct: 615 aaa 613
>gb|AU108438.1|AU108438 AU108438 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3910, mRNA sequence
Length = 375
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 489 aaatcgcctg-ctgggaagatcttgcggcgggagcttgtagagcangccgtgtccatggg 547
|||||||||| | ||||||||||| |||||||||||||| |||| ||| |||| |||||
Sbjct: 70 aaatcgcctgtcagggaagatctt-cggcgggagcttgtgcagcaggccctgtcgatggg 128
Query: 548 tacctncaagctttgaa 564
| ||| |||||||||||
Sbjct: 129 tgcctccaagctttgaa 145
>gb|CZ552845.1|CZ552845 M0006170 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0006170, DNA sequence
Length = 341
Score = 56.0 bits (28), Expect = 3e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 336 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 395
|||||||| ||||| || ||| |||| ||||||||||| ||| ||| ||||||| |||
Sbjct: 200 tatccagatgaagaagctggggaactaccaatggctttcgtagaaaggcaaccaggttca 259
Query: 396 aaccttaccgagcaacaagtcatggatt 423
|| ||||| || |||||||||||||||
Sbjct: 260 aatattaccaaggaacaagtcatggatt 287
Score = 46.1 bits (23), Expect = 0.028
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 263 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 309
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 38 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 84
>gb|AU174314.1|AU174314 AU174314 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4301, mRNA sequence
Length = 306
Score = 52.0 bits (26), Expect = 4e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 513 cggcgggagcttgtagagcangccgtgtccatgggtacctncaagctttgaa 564
|||||||||||||| |||| ||| |||| |||||| ||| |||||||||||
Sbjct: 24 cggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttgaa 75
>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
complete sequence
Length = 133090
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 31132 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 31092
>gb|AACV01005814.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005814, whole
genome shotgun sequence
Length = 16947
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 7960 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 7920
>gb|AACV01016881.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016881, whole
genome shotgun sequence
Length = 16241
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 12151 cggcgagctctgggtccgagg 12131
>ref|XM_479281.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1830
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 1308 cggcgagctctgggtccgagg 1328
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 215693 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 215733
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1340_C08
Length = 192167
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 98327 cggcgagctctgggtccgagg 98307
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 14166061 cggcgagctctgggtccgagg 14166041
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
complete sequence
Length = 138054
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 28869 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 28909
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 12019578 cggcgagctctgggtccgagg 12019558
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 1830337 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 1830377
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 25419017 cggcgagctctgggtccgagg 25418997
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 2022699 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 2022739
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 1803228 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 1803268
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 83 cggcgagctctgggtccgagg 103
|||||||||||||||||||||
Sbjct: 26553056 cggcgagctctgggtccgagg 26553036
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 42.1 bits (21), Expect = 0.43
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 83 cggcgagctctgggtccgaggaccagtcgtcatgaaaggtt 123
||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 1803230 cggcgagctctggatccgtggaccgtacgtcatgaaaggtt 1803270
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 985,385
Number of Sequences: 438736
Number of extensions: 985385
Number of successful extensions: 4916
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4666
Number of HSP's gapped (non-prelim): 248
length of query: 764
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 743
effective length of database: 2,791,206,460
effective search space: 2073866399780
effective search space used: 2073866399780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)