BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.1
(724 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_190315.1| Oryza sativa (japonica cultivar-group), p... 276 2e-071
gb|AU173984.1|AU173984 AU173984 Rice green shoot Oryza sati... 176 1e-041
ref|NM_190316.1| Oryza sativa (japonica cultivar-group), p... 176 1e-041
gb|AU223114.1|AU223114 AU223114 Rice shoot Oryza sativa (ja... 159 3e-036
gb|AU197839.1|AU197839 AU197839 Rice green shoot Oryza sati... 123 1e-025
gb|AU223163.1|AU223163 AU223163 Rice shoot Oryza sativa (ja... 115 3e-023
dbj|AP003791.4| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
gb|AACV01002867.1| Oryza sativa (japonica cultivar-group) c... 111 5e-022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 111 5e-022
dbj|AP003313.3| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
dbj|AP006757.2| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 111 5e-022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 111 5e-022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
gb|AQ576529.1|AQ576529 nbxb0089G14r CUGI Rice BAC Library O... 88 8e-015
gb|AU108438.1|AU108438 AU108438 Rice shoot Oryza sativa (ja... 74 1e-010
gb|AU174314.1|AU174314 AU174314 Rice shoot Oryza sativa (ja... 64 1e-007
gb|CZ552845.1|CZ552845 M0006170 AS_TRIM_TDNA_B1 Oryza sativ... 56 3e-005
>ref|NM_190315.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1629
Score = 276 bits (139), Expect = 2e-071
Identities = 366/444 (82%)
Strand = Plus / Plus
Query: 90 ggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaaa 149
||||| || ||||| || ||||| || |||||||| || || ||||||||||||||||||
Sbjct: 1186 ggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctggttgaaa 1245
Query: 150 accggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcggttgaaa 209
|| ||| |||||||||| || ||||| || || ||||| |||||||| ||||
Sbjct: 1246 acaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcgactgaag 1305
Query: 210 gagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaat 269
||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |
Sbjct: 1306 gagttgataaagtacaagggataccaggtacctccagcagaactggagcatattctgcag 1365
Query: 270 tctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaa 329
|| ||||||| ||| || || |||||||| || |||||||| ||||| || ||| ||
Sbjct: 1366 tcccatcctggaatcgctgatgcggcagttatcccatatccagatgaagaagctggggaa 1425
Query: 330 ctcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatg 389
|| ||||||||||| ||||| ||| ||||||| ||||| ||||| || |||||||||||
Sbjct: 1426 ctaccaatggctttcatagtaaggcaaccaggttcaaatattaccaaggaacaagtcatg 1485
Query: 390 gatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttct 449
|||| || || |||||||| || || |||||||| || || |||||||| ||||| ||
Sbjct: 1486 gattatgtcgcaaaacaggttgcgccatacaagaaggtgcgacgagtggcttttgtcact 1545
Query: 450 gcaatccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtg 509
||||| || ||||||||||| ||||||||| | |||||||||||||| |||||||| ||
Sbjct: 1546 gcaataccaaaatcgcctgcagggaagatccttcggcgggagcttgtgcagcaggccctg 1605
Query: 510 tccatgggtacctccaagctttga 533
|| |||||| ||||||||||||||
Sbjct: 1606 tcgatgggtgcctccaagctttga 1629
>gb|AU173984.1|AU173984 AU173984 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10092, mRNA sequence
Length = 468
Score = 176 bits (89), Expect = 1e-041
Identities = 203/241 (84%)
Strand = Plus / Plus
Query: 294 gcagttattccttatccagacgaagacgccgggcaactcccaatggcttttatagtgagg 353
|||||||| || |||||||| ||||| || ||| |||| ||||||||||| ||||| |||
Sbjct: 16 gcagttatcccatatccagatgaagaagctggggaactaccaatggctttcatagtaagg 75
Query: 354 aaaccagggtcaaaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgca 413
||||||| ||||| ||||| || ||||||||||||||| || || |||||||| ||
Sbjct: 76 caaccaggttcaaatattaccaaggaacaagtcatggattatgtcgcaaaacaggttgcg 135
Query: 414 ccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcgcctgctggg 473
|| |||||||| || || |||||||| ||||| ||||||| || ||||||||||| |||
Sbjct: 136 ccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatcgcctgcaggg 195
Query: 474 aagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctccaagctttga 533
|||||| | |||||||||||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 196 aagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttga 255
Query: 534 a 534
|
Sbjct: 256 a 256
>ref|NM_190316.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1740
Score = 176 bits (89), Expect = 1e-041
Identities = 301/374 (80%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 1343 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 1402
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaac 252
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| || || || |
Sbjct: 1403 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtaccaccagctgagc 1462
Query: 253 tggagcatatcctgaattctcatcctgatatcatggacgcagcagttattccttatccag 312
||||||| || || | |||| |||||| ||| || || || ||| | || ||||| |
Sbjct: 1463 tggagcacattctacagtctcgtcctgaaatcgctgatgctgctgttgtcccatatcctg 1522
Query: 313 acgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaacctta 372
| ||||| || |||||||| |||||||||||| |||||||| |||| || || ||||||
Sbjct: 1523 atgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgcatacctta 1582
Query: 373 ccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtc 432
||||||||||||||||| | | ||| |||||||| || || |||||||||||||| || |
Sbjct: 1583 ccgagcaacaagtcatgaactgcgtcgctaaacatgttgcgccctacaagaaagtgcgcc 1642
Query: 433 gagtggcctttgtttctgcaatccccaaatcgcctgctgggaagatcttgcggcgggagc 492
| ||||| ||||| |||||| || ||||| ||||| ||||||||| || | || ||||
Sbjct: 1643 gtgtggcttttgtcaatgcaataccgaaatctcctgcagggaagatcctgagacgagagc 1702
Query: 493 ttgtagagcaggcc 506
||||| |||||||
Sbjct: 1703 ttgtactgcaggcc 1716
>gb|AU223114.1|AU223114 AU223114 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3837, mRNA sequence
Length = 455
Score = 159 bits (80), Expect = 3e-036
Identities = 185/220 (84%)
Strand = Plus / Plus
Query: 315 gaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaaccttacc 374
||||| || ||| |||| ||||||||||| ||||| ||| ||||||| ||||| |||||
Sbjct: 4 gaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttcaaatattacc 63
Query: 375 gagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcga 434
|| ||||||||||||||| || || |||||||| || || |||||||| || || |||
Sbjct: 64 aaggaacaagtcatggattatgtcgcaaaacaggttgcgccatacaagaaggtgcgacga 123
Query: 435 gtggcctttgtttctgcaatccccaaatcgcctgctgggaagatcttgcggcgggagctt 494
||||| ||||| ||||||| || ||||||||||| ||||||||| | ||||||||||||
Sbjct: 124 gtggcttttgtcactgcaataccaaaatcgcctgcagggaagatccttcggcgggagctt 183
Query: 495 gtagagcaggccgtgtccatgggtacctccaagctttgaa 534
|| |||||||| |||| |||||| |||||||||||||||
Sbjct: 184 gtgcagcaggccctgtcgatgggtgcctccaagctttgaa 223
>gb|AU197839.1|AU197839 AU197839 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10094, mRNA sequence
Length = 434
Score = 123 bits (62), Expect = 1e-025
Identities = 166/202 (82%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggat 392
||||||||||| ||||| ||| ||||||| || || | || || ||||||||||||||
Sbjct: 21 ccaatggctttcatagtaaggcaaccaggttccaatatncccaaggaacaagtcatggat 80
Query: 393 ttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgca 452
| || | |||||||| || || |||||||| || || |||||||| ||||| |||||
Sbjct: 81 tatgtcncaaaacaggttgcgccatacaagaaggtgcgacgagtggcttttgtcnctgca 140
Query: 453 atccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtcc 512
|| || ||||||||||| ||||||||| | |||||||||||||| |||||||| ||||
Sbjct: 141 ataccaaaatcgcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcg 200
Query: 513 atgggtacctccaagctttgaa 534
|||||| || ||||||||||||
Sbjct: 201 atgggtgccnccaagctttgaa 222
>gb|AU223163.1|AU223163 AU223163 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4303, mRNA sequence
Length = 465
Score = 115 bits (58), Expect = 3e-023
Identities = 145/174 (83%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 5 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 64
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaa 425
|| ||||| || ||||||||||||||| || || |||||||| || || ||||||||
Sbjct: 65 aatattaccaaggaacaagtcatggattatgtcgcaaaacaggttgcgccatacaagaag 124
Query: 426 gttcgtcgagtggcctttgtttctgcaatccccaaatcgcctgctgggaagatc 479
|| || |||||||| ||||| ||||||| || ||||||||||| |||||||||
Sbjct: 125 gtgcgacgagtggcttttgtcactgcaataccaaaatcgcctgcagggaagatc 178
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1065G12
Length = 165006
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 50336 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 50395
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 50396 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 50455
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 50456 actgaaggagttgataaagtacaagggataccaggta 50492
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 51318 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 51377
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 51378 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 51437
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 51438 caagctttgaa 51448
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 55351 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 55410
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 55411 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 55458
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 55787 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 55846
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 55847 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 55887
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 50762 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 50821
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 50822 aatattaccaaggaacaagtcatggatt 50849
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 56090 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 56149
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 56150 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 56191
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 50600 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 50646
>gb|AACV01002867.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002867, whole
genome shotgun sequence
Length = 33582
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 3078 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 3137
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 3138 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 3197
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 3198 actgaaggagttgataaagtacaagggataccaggta 3234
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 4060 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 4119
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 4120 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 4179
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 4180 caagctttgaa 4190
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 8093 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 8152
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 8153 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 8200
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 8529 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 8588
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 8589 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 8629
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 3504 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 3563
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 3564 aatattaccaaggaacaagtcatggatt 3591
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 8832 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 8891
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 8892 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 8933
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 3342 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 3388
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 39329300 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 39329359
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 39329360 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 39329419
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 39329420 actgaaggagttgataaagtacaagggataccaggta 39329456
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 39330282 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 39330341
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 39330342 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 39330401
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 39330402 caagctttgaa 39330412
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 39334315 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 39334374
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 39334375 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 39334422
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 39334751 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 39334810
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 39334811 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 39334851
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 39329726 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 39329785
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 39329786 aatattaccaaggaacaagtcatggatt 39329813
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 39335054 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 39335113
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 39335114 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 39335155
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 39329564 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 39329610
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 13776683 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 13776742
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 13776743 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 13776802
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 13776803 actgaaggagttgataaagtacaagggataccaggta 13776839
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 13777665 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 13777724
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 13777725 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 13777784
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 13777785 caagctttgaa 13777795
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 13781698 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 13781757
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 13781758 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 13781805
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 13782134 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 13782193
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 13782194 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 13782234
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 13777109 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 13777168
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 13777169 aatattaccaaggaacaagtcatggatt 13777196
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 13782437 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 13782496
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 13782497 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 13782538
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 13776947 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 13776993
>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0035F12
Length = 153439
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 124390 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 124449
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 124450 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 124509
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 124510 actgaaggagttgataaagtacaagggataccaggta 124546
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 125372 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 125431
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 125432 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 125491
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 125492 caagctttgaa 125502
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 129405 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 129464
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 129465 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 129512
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 129841 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 129900
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 129901 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 129941
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 124816 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 124875
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 124876 aatattaccaaggaacaagtcatggatt 124903
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 130144 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 130203
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 130204 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 130245
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 124654 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 124700
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0551C06
Length = 149829
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 29876 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 29935
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 29936 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 29995
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 29996 actgaaggagttgataaagtacaagggataccaggta 30032
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 30858 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 30917
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 30918 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 30977
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 30978 caagctttgaa 30988
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 34891 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 34950
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 34951 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 34998
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 35327 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 35386
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 35387 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 35427
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 30302 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 30361
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 30362 aatattaccaaggaacaagtcatggatt 30389
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 35630 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 35689
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 35690 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 35731
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 30140 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 30186
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 13503851 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 13503910
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 13503911 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 13503970
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 13503971 actgaaggagttgataaagtacaagggataccaggta 13504007
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 13504833 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 13504892
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 13504893 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 13504952
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 13504953 caagctttgaa 13504963
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 13508866 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 13508925
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 13508926 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 13508973
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 13509302 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 13509361
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 13509362 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 13509402
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 13504277 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 13504336
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 13504337 aatattaccaaggaacaagtcatggatt 13504364
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 13509605 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 13509664
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 13509665 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 13509706
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 13504115 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 13504161
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 38705572 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 38705631
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 38705632 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 38705691
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 38705692 actgaaggagttgataaagtacaagggataccaggta 38705728
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 38706554 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 38706613
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 38706614 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 38706673
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 38706674 caagctttgaa 38706684
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 38710587 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 38710646
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 38710647 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 38710694
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 38711023 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 38711082
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 38711083 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 38711123
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 38705998 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 38706057
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 38706058 aatattaccaaggaacaagtcatggatt 38706085
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 38711326 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 38711385
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 38711386 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 38711427
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 38705836 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 38705882
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 111 bits (56), Expect = 5e-022
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 83 tttttcaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctg 142
|||||||||||| || ||||| || ||||| || |||||||| || || |||||||||||
Sbjct: 39248630 tttttcaggttacgtgggtgatgatgaggcgaccgcagcaacggttgactcagaaggctg 39248689
Query: 143 gttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcg 202
||||||||| ||| |||||||||| || ||||| || || ||||| ||||||||
Sbjct: 39248690 gttgaaaacaggtgacctctgctacttcaatgaagatggttttctatacatcgttgatcg 39248749
Query: 203 gttgaaagagttgataaagtacaagggatatcaggta 239
|||| ||||||||||||||||||||||| ||||||
Sbjct: 39248750 actgaaggagttgataaagtacaagggataccaggta 39248786
Score = 109 bits (55), Expect = 2e-021
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 39249612 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 39249671
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 39249672 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 39249731
Query: 524 caagctttgaa 534
|||||||||||
Sbjct: 39249732 caagctttgaa 39249742
Score = 85.7 bits (43), Expect = 3e-014
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 133 cagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctaca 192
|||| |||||||||||||| ||| ||||||||||||| ||||| | ||||||
Sbjct: 39253645 cagacggctggttgaaaactggtgacctctgctacttcaacgaagatggttatctctacg 39253704
Query: 193 ttgttgatcggttgaaagagttgataaagtacaagggatatcaggtac 240
|||||||||| ||||| ||| ||||||| |||||||||||||||||||
Sbjct: 39253705 ttgttgatcgattgaaggagctgataaaatacaagggatatcaggtac 39253752
Score = 81.8 bits (41), Expect = 5e-013
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
||||| || ||||| || |||||||| |||||||||||| |||||||| |||| || ||
Sbjct: 39254081 tatcctgatgaagaagctgggcaactgccaatggcttttgtagtgaggcaaccgggtgca 39254140
Query: 366 aaccttaccgagcaacaagtcatggatttcgtggctaaaca 406
||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 39254141 taccttaccgagcaacaagtcatgaactgcgtcgctaaaca 39254181
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 39249056 tatccagatgaagaagctggggaactaccaatggctttcatagtaaggcaaccaggttca 39249115
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 39249116 aatattaccaaggaacaagtcatggatt 39249143
Score = 52.0 bits (26), Expect = 4e-004
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 405 caggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatcg 464
||||| || |||||||||||||| || || ||||| ||||| |||||| || |||||
Sbjct: 39254384 caggttgcgccctacaagaaagtgcgccgtgtggcttttgtcaatgcaataccgaaatct 39254443
Query: 465 cctgctgggaagatcttgcggcgggagcttgtagagcaggcc 506
||||| ||||||||| || | || ||||||||| |||||||
Sbjct: 39254444 cctgcagggaagatcctgagacgagagcttgtactgcaggcc 39254485
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 39248894 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 39248940
>gb|AQ576529.1|AQ576529 nbxb0089G14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0089G14r, DNA sequence
Length = 736
Score = 87.7 bits (44), Expect = 8e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 404 acaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgcaatccccaaatc 463
|||||| || || |||||||| || || |||||||| ||||| ||||||| || |||||
Sbjct: 120 acaggttgcgccatacaagaaggtgcgacgagtggcttttgtcactgcaataccaaaatc 61
Query: 464 gcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctc 523
|||||| ||||||||| | |||||||||||||| |||||||| |||| |||||| ||||
Sbjct: 60 gcctgcagggaagatccttcggcgggagcttgtgcagcaggccctgtcgatgggtgcctc 1
Score = 46.1 bits (23), Expect = 0.026
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 306 tatccagacgaagacgccgggcaac-tcccaatggcttttatagtgaggaaaccagggtc 364
|||||||| ||||| || ||| ||| ||||||||||||| ||||| ||| ||||||| ||
Sbjct: 675 tatccagatgaagaagctggggaacctcccaatggctttcatagtaaggcaaccaggttc 616
Query: 365 aaa 367
|||
Sbjct: 615 aaa 613
>gb|AU108438.1|AU108438 AU108438 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3910, mRNA sequence
Length = 375
Score = 73.8 bits (37), Expect = 1e-010
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 459 aaatcgcctg-ctgggaagatcttgcggcgggagcttgtagagcaggccgtgtccatggg 517
|||||||||| | ||||||||||| |||||||||||||| |||||||| |||| |||||
Sbjct: 70 aaatcgcctgtcagggaagatctt-cggcgggagcttgtgcagcaggccctgtcgatggg 128
Query: 518 tacctccaagctttgaa 534
| |||||||||||||||
Sbjct: 129 tgcctccaagctttgaa 145
>gb|AU174314.1|AU174314 AU174314 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4301, mRNA sequence
Length = 306
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 483 cggcgggagcttgtagagcaggccgtgtccatgggtacctccaagctttgaa 534
|||||||||||||| |||||||| |||| |||||| |||||||||||||||
Sbjct: 24 cggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttgaa 75
>gb|CZ552845.1|CZ552845 M0006170 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0006170, DNA sequence
Length = 341
Score = 56.0 bits (28), Expect = 3e-005
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 306 tatccagacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtca 365
|||||||| ||||| || ||| |||| ||||||||||| ||| ||| ||||||| |||
Sbjct: 200 tatccagatgaagaagctggggaactaccaatggctttcgtagaaaggcaaccaggttca 259
Query: 366 aaccttaccgagcaacaagtcatggatt 393
|| ||||| || |||||||||||||||
Sbjct: 260 aatattaccaaggaacaagtcatggatt 287
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 233 tcaggtacctcctgccgaactggagcatatcctgaattctcatcctg 279
|||||||||||| || |||||||||||||| ||| | || |||||||
Sbjct: 38 tcaggtacctccagcagaactggagcatattctgcagtcccatcctg 84
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 994,333
Number of Sequences: 438736
Number of extensions: 994333
Number of successful extensions: 5471
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5334
Number of HSP's gapped (non-prelim): 115
length of query: 724
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 703
effective length of database: 2,791,206,460
effective search space: 1962218141380
effective search space used: 1962218141380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)