BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716286.2.1
(1104 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA... 662 0.0
ref|NM_191984.1| Oryza sativa (japonica cultivar-group), p... 650 0.0
gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing... 617 e-174
gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japo... 539 e-150
gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing... 472 e-130
gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature lea... 398 e-108
gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (j... 357 8e-096
gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid ... 351 5e-094
gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature lea... 339 2e-090
gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid ... 333 1e-088
gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa... 301 4e-079
gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (j... 301 4e-079
gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (jap... 299 2e-078
gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (j... 264 9e-068
gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA ... 186 2e-044
gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japoni... 151 1e-033
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 127 1e-026
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|CF326878.1|CF326878 NACL--01-C06.g1 Rice callus plasmid ... 92 8e-016
gb|C96970.1|C96970 C96970 Rice callus Oryza sativa (japonic... 76 5e-011
gb|C97006.1|C97006 C97006 Rice callus Oryza sativa (japonic... 44 0.16
gb|C97007.1|C97007 C97007 Rice callus Oryza sativa (japonic... 44 0.16
gb|CA754667.1|CA754667 BR030005001_BR030_E11_85_083.ab1 OA ... 44 0.16
gb|CA999967.1|CA999967 S234L_D06 Rice cold stress germinati... 44 0.16
gb|CB000215.1|CB000215 S345T_B07 Rice cold stress germinati... 44 0.16
gb|CF299363.1|CF299363 7LEAF--03-F17.b1 Rice leaf plasmid c... 44 0.16
gb|CF299364.1|CF299364 7LEAF--03-F17.g1 Rice leaf plasmid c... 44 0.16
gb|CV720784.1|CV720784 YBH--01-N10.b1 Rice before heading y... 44 0.16
gb|CV728679.1|CV728679 FLO--01-C08.b1 Rice flower lambda ph... 44 0.16
gb|CV728680.1|CV728680 FLO--01-C08.g1 Rice flower lambda ph... 44 0.16
gb|CV732417.1|CV732417 FLO--06-O05.b1 Rice flower lambda ph... 44 0.16
gb|CV732418.1|CV732418 FLO--06-O05.g1 Rice flower lambda ph... 44 0.16
dbj|AB074411.1| Oryza sativa (japonica cultivar-group) mRNA... 44 0.16
dbj|AK063826.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
dbj|AK099284.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.16
gb|AACV01002031.1| Oryza sativa (japonica cultivar-group) c... 44 0.16
ref|NM_192451.1| Oryza sativa (japonica cultivar-group), p... 44 0.16
dbj|AP003294.2| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP003291.3| Oryza sativa (japonica cultivar-group) geno... 44 0.16
>dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117D10, full
insert sequence
Length = 893
Score = 662 bits (334), Expect = 0.0
Identities = 433/466 (92%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 612 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 553
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct: 552 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttggtgcactta 493
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 492 ggagtgcctggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtcct 433
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 432 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 373
Query: 748 gaaacctaacctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaa 807
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 372 ggaacctaacctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaa 313
Query: 808 aaactccaccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgca 867
||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 312 aaactccaccttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgca 253
Query: 868 tgttctcctccgagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcg 927
||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 252 tgttctcctccgacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcg 193
Query: 928 tctccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 192 tctccttgatgattcgccgggggaggttgctgttggccatcggatc 147
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 816 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 757
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 756 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 700
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 699 atctccagtttgttcttatcaagcaaatggca 668
>ref|NM_191984.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 462
Score = 650 bits (328), Expect = 0.0
Identities = 427/460 (92%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 460 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 401
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct: 400 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttggtgcactta 341
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 340 ggagtgcctggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtcct 281
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 280 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 221
Query: 748 gaaacctaacctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaa 807
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 220 ggaacctaacctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaa 161
Query: 808 aaactccaccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgca 867
||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 160 aaactccaccttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgca 101
Query: 868 tgttctcctccgagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcg 927
||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 100 tgttctcctccgacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcg 41
Query: 928 tctccttgatgatccgccgcgggaggttgctgttggccat 967
||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 40 tctccttgatgattcgccgggggaggttgctgttggccat 1
>gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-L10, mRNA sequence
Length = 699
Score = 617 bits (311), Expect = e-174
Identities = 407/439 (92%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 453 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 394
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct: 393 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttggtgcactta 334
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 333 ggagtgcctggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtcct 274
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 273 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 214
Query: 748 gaaacctaacctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaa 807
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaacctaacctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaa 154
Query: 808 aaactccaccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgca 867
||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 153 aaactccaccttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgca 94
Query: 868 tgttctcctccgagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcg 927
||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 93 tgttctcctccgacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcg 34
Query: 928 tctccttgatgatccgccg 946
||||||||||||| |||||
Sbjct: 33 tctccttgatgattcgccg 15
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 657 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 598
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 597 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 541
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 540 atctccagtttgttcttatcaagcaaatggca 509
>gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-BI2.1C02 5', mRNA sequence
Length = 521
Score = 539 bits (272), Expect = e-150
Identities = 365/397 (91%)
Strand = Plus / Minus
Query: 577 agtgctttgcaatgttatcggagagagggtcatctggatttggtgcactcagtagagcct 636
||||||||||||||||||| |||| | ||||| || ||||||||||| || || ||||
Sbjct: 463 agtgctttgcaatgttatcagagannngatcatcagggtttggtgcacttaggagtgcct 404
Query: 637 gtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgt 696
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 403 ggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgt 344
Query: 697 cgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaa 756
| |||||||||||||||||||||||||||||||| || || || |||||||| |||||||
Sbjct: 343 caaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaa 284
Query: 757 cctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactccac 816
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 283 cctttggagcagccataggatattcctcgggtaaaaagagttcaagcttaaaaactccac 224
Query: 817 cttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcct 876
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 223 cttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcct 164
Query: 877 ccgagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcgtctccttga 936
|||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 163 ccgacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttga 104
Query: 937 tgatccgccgcgggaggttgctgttggccatcggatc 973
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 103 tgattcgccgggggaggttgctgttggccatcggatc 67
>gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-G16, mRNA sequence
Length = 587
Score = 472 bits (238), Expect = e-130
Identities = 322/350 (92%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 351 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 292
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| | |||||| ||||| || ||||||||||| |
Sbjct: 291 tggctttccagtgctttgcaatgttatcagggagaggatcatcagggtttggtgcactta 232
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 231 ggagtgcctggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtcct 172
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 171 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 112
Query: 748 gaaacctaacctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaa 807
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 111 ggaacctaacctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaa 52
Query: 808 aaactccaccttcatagggcgactgcgccggcccaaggatcataacgttg 857
||||||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct: 51 aaactccaccttcatagggggactgtgccgggccaaggatcatgacgttg 2
Score = 85.7 bits (43), Expect = 5e-014
Identities = 128/153 (83%), Gaps = 4/153 (2%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgacc-a 357
|||||||||||||| ||||||||||||||| |||||| | ||||||||||||| ||| |
Sbjct: 556 caagttctaccacagatactgattagtcaagggtgccntagggtaaagggaaccaaccca 497
Query: 358 caggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaa 417
|| || |||| |||| |||||| || |||||||||||| | || | ||||| || ||
Sbjct: 496 catgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaa 440
Query: 418 tatctccagtctatttttatcaagcaaatggca 450
|||||||||| | || |||||||||||||||||
Sbjct: 439 tatctccagtttgttcttatcaagcaaatggca 407
>gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_1A, mRNA sequence
Length = 394
Score = 398 bits (201), Expect = e-108
Identities = 256/275 (93%)
Strand = Plus / Minus
Query: 699 aggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaacc 758
||||||||||||||||||||||||||||||| || || || ||| |||| |||||||||
Sbjct: 386 aggcatatcctaccaagcttgtcaatgttggngtggtatattttgntcaggaacctaacc 327
Query: 759 tttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 818
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 267
Query: 819 tcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctcc 878
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 tcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctcc 207
Query: 879 gagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcgtctccttgatg 938
|| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 206 gacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatg 147
Query: 939 atccgccgcgggaggttgctgttggccatcggatc 973
|| ||||| ||||||||||||||||||||||||||
Sbjct: 146 attcgccgggggaggttgctgttggccatcggatc 112
>gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50402, mRNA sequence
Length = 437
Score = 357 bits (180), Expect = 8e-096
Identities = 248/273 (90%)
Strand = Plus / Minus
Query: 701 gcatatcctaccaagcttgtcaatgttgggatgataaatcttggtcagaaacctaacctt 760
||||||||||| ||||||||||||| || | || || || |||||||| |||||||||||
Sbjct: 400 gcatatcctacaaagcttgtcaatgntgnggtggtatattttggtcaggaacctaacctt 341
Query: 761 tggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttc 820
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttc 281
Query: 821 atagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccga 880
|||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 280 atagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccga 221
Query: 881 gggcgacgcgctgatccccggcgctggctcgctgagcagtcgctgcgtctccttgatgat 940
|| ||||||| || |||||||||||||| || || |||||||||||||||||||||||
Sbjct: 220 cgganacgcgctnattcccggcgctggctcnctnaggagtcgctgcgtctccttgatgat 161
Query: 941 ccgccgcgggaggttgctgttggccatcggatc 973
| ||| ||||||||||||||||||||||||||
Sbjct: 160 tcnccgggggaggttgctgttggccatcggatc 128
>gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 535
Score = 351 bits (177), Expect = 5e-094
Identities = 243/265 (91%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 265 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 206
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct: 205 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttggtgcactta 146
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 145 ggagtgcctggatactcaaaagaactgtccgaatctgaagggctgggctccatttgtcct 86
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 85 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 26
Query: 748 gaaacctaacctttggggcagccat 772
| |||||||||||||| ||||||||
Sbjct: 25 ggaacctaacctttggagcagccat 1
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 469 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 410
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 409 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 353
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 352 atctccagtttgttcttatcaagcaaatggca 321
>gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_2Z, mRNA sequence
Length = 692
Score = 339 bits (171), Expect = 2e-090
Identities = 267/303 (88%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 433 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 374
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct: 373 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttggtgcactna 314
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| | ||||| |||| |||||||||||| ||||||| ||| ||||||||||||||| |||
Sbjct: 313 ggantgcctggatacncaaaagaactgtccgaatctnaagggctgggctccatttgacct 254
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||| ||||||||||| ||| | ||| || || || |||||||
Sbjct: 253 tgagaatgtcaaggcatatccnaccaagcttgtnaatntaggggtggtanattttggtca 194
Query: 748 gaaacctaacctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaa 807
|||||||||||||| ||||||| ||| |||||||||| |||||||||||| ||||||
Sbjct: 193 ngaacctaacctttggancagccataggaaattcctcaggnaaaaagagttcangcttaa 134
Query: 808 aaa 810
|||
Sbjct: 133 aaa 131
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 637 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 578
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 577 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 521
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 520 atctccagtttgttcttatcaagcaaatggca 489
>gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 557
Score = 333 bits (168), Expect = 1e-088
Identities = 408/478 (85%), Gaps = 10/478 (2%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 66 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 125
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 126 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 182
Query: 419 atctccagtctatttttatcaagcaaatggcaacggattaggactgaagtatgatggggt 478
||||||||| | || ||||||||||||||||| ||||| | || ||| |||| ||| |
Sbjct: 183 atctccagtttgttcttatcaagcaaatggcatttgattaaggctaaagcatgacggg-t 241
Query: 479 tattacaccaagaacagcactgcgctctcatgcaccgctcgcatacaggcgagtccactc 538
||||||| || ||| ||| || | | | |||||||||| ||||||||||||||||||||
Sbjct: 242 tattacatcacgaaaggcattgggtttt-atgcaccgctggcatacaggcgagtccactc 300
Query: 539 cttggctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcgga 598
||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||| |
Sbjct: 301 ctttgctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcaaa 360
Query: 599 gagagggtcatctggattt-ggtgcactcagtagagcctgtatactcaaaagaactgttc 657
|||||| || || || ||| |||||||| || || ||||| ||||||||||||||||| |
Sbjct: 361 gagaggatcttcagggttttggtgcacttaggagtgcctggatactcaaaagaactgtcc 420
Query: 658 gaatctgaagtgctgggctccatttgtccttgagaatgtcgaggcatatcctaccaagct 717
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 gaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatcctaccaagct 480
Query: 718 tgtcaatgtt-gggatg--ataaatcttggtcagaaacctaacctttggggcagccat 772
||| |||||| ||| || ||| | |||||||| |||||||||||||| ||||||||
Sbjct: 481 tgt-aatgttgggggtggtatattttttggtcaggaacctaacctttggagcagccat 537
>gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 412
Score = 301 bits (152), Expect = 4e-079
Identities = 210/228 (92%), Gaps = 2/228 (0%)
Strand = Plus / Minus
Query: 748 gaaacctaacctttggggca-gccatgggatattcctcaggtaaaaagagttcaagctta 806
|||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 335 gaaacctaacctttggancaagccataggatattcctcaggtaaaaagagttcaanctta 276
Query: 807 aaaactccaccttca-tagggcgactgcgccggcccaaggatcataacgttgaagtagcg 865
||||||||||||||| |||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 275 aaaactccaccttcaataggnggactgtgccgggccaaggatcatgacgttgaagtagcg 216
Query: 866 catgttctcctccgagggcgacgcgctgatccccggcgctggctcgctgagcagtcgctg 925
||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||
Sbjct: 215 catgttctcctccgacgganacgcgctgattcccggcgctggctcgctgaggagtcgctg 156
Query: 926 cgtctccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 155 cgtctccttgatgattcgccgggggaggttgctgttggccatcggatc 108
>gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 3', mRNA sequence
Length = 724
Score = 301 bits (152), Expect = 4e-079
Identities = 227/252 (90%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||| | ||||
Sbjct: 250 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacaacttctgcttcat 309
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttggtgcactca 627
||| |||||||||||||||||||||||| | ||||| ||||| || ||||||||||| |
Sbjct: 310 tggctttccagtgctttgcaatgttatcaaaaagaggatcatcagggtttggtgcactta 369
Query: 628 gtagagcctgtatactcaaaagaactgttcgaatctgaagtgctgggctccatttgtcct 687
| || ||||| |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 370 ggagtgcctggatactcaaaagaactgaccgaatctgaagggctgggctccatttgtcct 429
Query: 688 tgagaatgtcgaggcatatcctaccaagcttgtcaatgttgggatgataaatcttggtca 747
|||||||||| |||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 430 tgagaatgtcaaggcatatcctaccaagcttgtcaatgttggggtggtatattttggtca 489
Query: 748 gaaacctaacct 759
| ||||||||||
Sbjct: 490 ggaacctaacct 501
Score = 83.8 bits (42), Expect = 2e-013
Identities = 124/149 (83%), Gaps = 3/149 (2%)
Strand = Plus / Plus
Query: 302 gttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccacagg 361
||||||||||| |||||||||| |||| ||||||| | ||||||||||||| ||||| |
Sbjct: 49 gttctaccacagatactgattactcaagggtgccctagggtaaagggaaccaaccacttg 108
Query: 362 tgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaatatc 421
| |||| |||| |||||| || |||||||||||| | || | ||||| || ||||||
Sbjct: 109 tatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaatatc 165
Query: 422 tccagtctatttttatcaagcaaatggca 450
|||||| | || |||||||||||||||||
Sbjct: 166 tccagtttgttcttatcaagcaaatggca 194
>gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3571_1A, mRNA sequence
Length = 423
Score = 299 bits (151), Expect = 2e-078
Identities = 191/205 (93%)
Strand = Plus / Minus
Query: 769 ccatgggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttcatagggcg 828
|||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct: 340 ccataggatattcctcagttaaaaagagttcaagcttaaaaacnccaccttcataggggg 281
Query: 829 actgcgccggcccaaggatcataacgttgaagtagcgcatgttctcctccgagggcgacg 888
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 280 actgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgacggagacg 221
Query: 889 cgctgatccccggcgctggctcgctgagcagtcgctgcgtctccttgatgatccgccgcg 948
||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 220 cgctgattcccggngctggctcgctgaggagtcgctgcgtctccttgatgattcgccggg 161
Query: 949 ggaggttgctgttggccatcggatc 973
|||||||||||||||||||||||||
Sbjct: 160 ggaggttgctgttggccatcggatc 136
>gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 5', mRNA sequence
Length = 687
Score = 264 bits (133), Expect = 9e-068
Identities = 202/221 (91%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 accttcggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 291
Query: 816 ccttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctcc 875
||||||||||| ||||| ||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 290 ccttcatagggggactgtgccgggccaaggatcatgacgtcgaagtagcgcatgttctcc 231
Query: 876 tccgagggcgacg-cgctgatccccggcgctggctcg-ctgagcagtcgctgcgtctcct 933
|||| || |||| ||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct: 230 tccgtcggagacgtcgctgattcccggcgctggctcgcctgaggagtcgctgcgtctcct 171
Query: 934 tgatga-tccgccgcgggaggttgctgttggccatcggatc 973
|||||| ||| ||| |||||||||||| |||||||||||||
Sbjct: 170 tgatgattccaccgggggaggttgctgctggccatcggatc 130
>gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030014000_PLATE_A04_25_023.ab1 similar to
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)] gi|21644620|dbj|BAC01179.1| (AP003264)
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 255
Score = 186 bits (94), Expect = 2e-044
Identities = 115/122 (94%)
Strand = Plus / Minus
Query: 852 acgttgaagtagcgcatgttctcctccgagggcgacgcgctgatccccggcgctggctcg 911
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 251 acgttgaagtagcgcatgttctcctccgacggagacgcgctgattcccggcgctggctcg 192
Query: 912 ctgagcagtcgctgcgtctccttgatgatccgccgcgggaggttgctgttggccatcgga 971
||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct: 191 ctgaggagtcgctgcgtctccctgatgattcgccgggggaggttgctgttggccatcgga 132
Query: 972 tc 973
||
Sbjct: 131 tc 130
>gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2744_1A, mRNA sequence
Length = 351
Score = 151 bits (76), Expect = 1e-033
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctgtttcaacagcttctacctcat 567
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 112 atgcaccgctggcatacaggcgagtccactcctttgctgtttcaacagcttctgcttcat 53
Query: 568 tggatttccagtgctttgcaatgttatcggagagagggtcatctggatttgg 619
||| |||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct: 52 tggctttccagtgctttgcaatgttatcagagagaggatcatcagggtttgg 1
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 316 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 257
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 256 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 200
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 199 atctccagtttgttcttatcaagcaaatggca 168
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 20403 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 20462
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 20463 ctccgacggagacgcgctgattcccggcgctg 20494
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 18712 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 18771
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 18772 catatcctaccaagct 18787
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 18356 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 18415
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 18416 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 18460
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19694 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 19753
Query: 816 cct 818
|||
Sbjct: 19754 cct 19756
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 18025 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 18084
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 18085 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 18141
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 18142 atctccagtttgttcttatcaagcaaatggca 18173
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 20787 ccttgatgattcgccgggggaggttgctgttggccatcggatc 20829
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 18229 atgcaccgctggcatacaggcgagtccactcctttgctg 18267
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 18865 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 18908
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 27744968 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27745027
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 27745028 ctccgacggagacgcgctgattcccggcgctg 27745059
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 27743277 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 27743336
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 27743337 catatcctaccaagct 27743352
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 27742921 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27742980
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 27742981 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 27743025
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27744259 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 27744318
Query: 816 cct 818
|||
Sbjct: 27744319 cct 27744321
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 27742590 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 27742649
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 27742650 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 27742706
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 27742707 atctccagtttgttcttatcaagcaaatggca 27742738
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 27745352 ccttgatgattcgccgggggaggttgctgttggccatcggatc 27745394
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 27742794 atgcaccgctggcatacaggcgagtccactcctttgctg 27742832
Score = 52.0 bits (26), Expect = 7e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 904 ctggctcgctgagcagtcgctgcgtctcct 933
||||||||||||| ||||||||||||||||
Sbjct: 27745171 ctggctcgctgaggagtcgctgcgtctcct 27745200
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 27743430 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 27743473
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 26855512 agtgctgggctccattggtccttaaggatgtcaaggca 26855549
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2192351 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 2192410
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 2192411 ctccgacggagacgcgctgattcccggcgctg 2192442
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 2190660 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 2190719
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 2190720 catatcctaccaagct 2190735
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 2190304 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 2190363
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 2190364 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 2190408
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191642 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 2191701
Query: 816 cct 818
|||
Sbjct: 2191702 cct 2191704
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 2189973 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 2190032
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 2190033 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 2190089
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 2190090 atctccagtttgttcttatcaagcaaatggca 2190121
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2192735 ccttgatgattcgccgggggaggttgctgttggccatcggatc 2192777
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 2190177 atgcaccgctggcatacaggcgagtccactcctttgctg 2190215
Score = 52.0 bits (26), Expect = 7e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 904 ctggctcgctgagcagtcgctgcgtctcct 933
||||||||||||| ||||||||||||||||
Sbjct: 2192554 ctggctcgctgaggagtcgctgcgtctcct 2192583
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 2190813 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 2190856
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 1302895 agtgctgggctccattggtccttaaggatgtcaaggca 1302932
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 131592 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 131651
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 131652 ctccgacggagacgcgctgattcccggcgctg 131683
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 129901 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 129960
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 129961 catatcctaccaagct 129976
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 129545 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 129604
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 129605 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 129649
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130883 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 130942
Query: 816 cct 818
|||
Sbjct: 130943 cct 130945
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 129214 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 129273
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 129274 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 129330
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 129331 atctccagtttgttcttatcaagcaaatggca 129362
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 131976 ccttgatgattcgccgggggaggttgctgttggccatcggatc 132018
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 129418 atgcaccgctggcatacaggcgagtccactcctttgctg 129456
Score = 52.0 bits (26), Expect = 7e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 904 ctggctcgctgagcagtcgctgcgtctcct 933
||||||||||||| ||||||||||||||||
Sbjct: 131795 ctggctcgctgaggagtcgctgcgtctcct 131824
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 130054 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 130097
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 72864 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 72923
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 72924 ctccgacggagacgcgctgattcccggcgctg 72955
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 71173 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 71232
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 71233 catatcctaccaagct 71248
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 70817 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 70876
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 70877 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 70921
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72155 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 72214
Query: 816 cct 818
|||
Sbjct: 72215 cct 72217
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 70486 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 70545
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 70546 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 70602
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 70603 atctccagtttgttcttatcaagcaaatggca 70634
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 73248 ccttgatgattcgccgggggaggttgctgttggccatcggatc 73290
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 70690 atgcaccgctggcatacaggcgagtccactcctttgctg 70728
Score = 52.0 bits (26), Expect = 7e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 904 ctggctcgctgagcagtcgctgcgtctcct 933
||||||||||||| ||||||||||||||||
Sbjct: 73067 ctggctcgctgaggagtcgctgcgtctcct 73096
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 71326 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 71369
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2132195 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 2132254
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 2132255 ctccgacggagacgcgctgattcccggcgctg 2132286
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 2130504 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 2130563
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 2130564 catatcctaccaagct 2130579
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 2130148 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 2130207
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 2130208 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 2130252
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131486 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 2131545
Query: 816 cct 818
|||
Sbjct: 2131546 cct 2131548
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 2129817 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 2129876
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 2129877 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 2129933
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 2129934 atctccagtttgttcttatcaagcaaatggca 2129965
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2132579 ccttgatgattcgccgggggaggttgctgttggccatcggatc 2132621
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 2130021 atgcaccgctggcatacaggcgagtccactcctttgctg 2130059
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 2130657 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 2130700
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 1264799 agtgctgggctccattggtccttaaggatgtcaaggca 1264836
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 27333916 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27333975
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 27333976 ctccgacggagacgcgctgattcccggcgctg 27334007
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 27332225 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 27332284
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 27332285 catatcctaccaagct 27332300
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 27331869 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27331928
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 27331929 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 27331973
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27333207 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 27333266
Query: 816 cct 818
|||
Sbjct: 27333267 cct 27333269
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 27331538 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 27331597
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 27331598 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 27331654
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 27331655 atctccagtttgttcttatcaagcaaatggca 27331686
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 27334300 ccttgatgattcgccgggggaggttgctgttggccatcggatc 27334342
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 27331742 atgcaccgctggcatacaggcgagtccactcctttgctg 27331780
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 27332378 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 27332421
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 26466520 agtgctgggctccattggtccttaaggatgtcaaggca 26466557
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 127 bits (64), Expect = 1e-026
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 815 accttcatagggcgactgcgccggcccaaggatcataacgttgaagtagcgcatgttctc 874
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 27664298 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27664357
Query: 875 ctccgagggcgacgcgctgatccccggcgctg 906
|||||| || ||||||||||| ||||||||||
Sbjct: 27664358 ctccgacggagacgcgctgattcccggcgctg 27664389
Score = 127 bits (64), Expect = 1e-026
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 642 ctcaaaagaactgttcgaatctgaagtgctgggctccatttgtccttgagaatgtcgagg 701
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 27662607 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 27662666
Query: 702 catatcctaccaagct 717
||||||||||||||||
Sbjct: 27662667 catatcctaccaagct 27662682
Score = 113 bits (57), Expect = 2e-022
Identities = 93/105 (88%)
Strand = Plus / Plus
Query: 544 ctgtttcaacagcttctacctcattggatttccagtgctttgcaatgttatcggagagag 603
||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 27662251 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27662310
Query: 604 ggtcatctggatttggtgcactcagtagagcctgtatactcaaaa 648
| ||||| || ||||||||||| || || ||||| ||||| ||||
Sbjct: 27662311 gatcatcagggtttggtgcacttaggagtgcctggatactgaaaa 27662355
Score = 109 bits (55), Expect = 3e-021
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 756 acctttggggcagccatgggatattcctcaggtaaaaagagttcaagcttaaaaactcca 815
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27663589 acctttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactcca 27663648
Query: 816 cct 818
|||
Sbjct: 27663649 cct 27663651
Score = 105 bits (53), Expect = 5e-020
Identities = 129/152 (84%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 27661920 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 27661979
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcatttagagacttcattccatggcaaat 418
| || |||| |||| |||||| || |||||||||||| | || | ||||| || |||
Sbjct: 27661980 atgtatacagacaaataattca-agcggtagtcatttaaa--ctcccttccactgccaat 27662036
Query: 419 atctccagtctatttttatcaagcaaatggca 450
||||||||| | || |||||||||||||||||
Sbjct: 27662037 atctccagtttgttcttatcaagcaaatggca 27662068
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 931 ccttgatgatccgccgcgggaggttgctgttggccatcggatc 973
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 27664682 ccttgatgattcgccgggggaggttgctgttggccatcggatc 27664724
Score = 61.9 bits (31), Expect = 7e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 508 atgcaccgctcgcatacaggcgagtccactccttggctg 546
|||||||||| ||||||||||||||||||||||| ||||
Sbjct: 27662124 atgcaccgctggcatacaggcgagtccactcctttgctg 27662162
Score = 52.0 bits (26), Expect = 7e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 904 ctggctcgctgagcagtcgctgcgtctcct 933
||||||||||||| ||||||||||||||||
Sbjct: 27664501 ctggctcgctgaggagtcgctgcgtctcct 27664530
Score = 48.1 bits (24), Expect = 0.010
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 716 cttgtcaatgttgggatgataaatcttggtcagaaacctaacct 759
||||||||||||||| || || || |||||||| ||||||||||
Sbjct: 27662760 cttgtcaatgttggggtggtatattttggtcaggaacctaacct 27662803
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 26774842 agtgctgggctccattggtccttaaggatgtcaaggca 26774879
>gb|CF326878.1|CF326878 NACL--01-C06.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-C06, mRNA sequence
Length = 316
Score = 91.7 bits (46), Expect = 8e-016
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||
Sbjct: 112 caagttctaccacagatactgattagtcaagggtgccctagggtaaagggaaccaaccac 53
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcattta 396
| || |||| |||| |||||| || ||||||||||||
Sbjct: 52 atgtatacagacaaataattca-agcggtagtcattta 16
>gb|C96970.1|C96970 C96970 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50402_8Z, mRNA sequence
Length = 329
Score = 75.8 bits (38), Expect = 5e-011
Identities = 83/98 (84%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 299 caagttctaccacatatactgattagtcaaaggtgcccaaaggtaaagggaaccgaccac 358
|||||||||||||| ||||||||||||||| || |||| | || |||||||||| |||||
Sbjct: 218 caagttctaccacagatactgattagtcaagggngccctagggnaaagggaaccaaccac 159
Query: 359 aggtgtacaaccaaacaattcagagtggtagtcattta 396
| || |||| |||| |||||| || || |||||||||
Sbjct: 158 atgtatacagacaaataattca-agnggnagtcattta 122
>gb|C97006.1|C97006 C97006 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50470_7A, mRNA sequence
Length = 452
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 346 agtgctgggctccattggtccttaaggatgtcaaggca 309
>gb|C97007.1|C97007 C97007 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50470_8Z, mRNA sequence
Length = 498
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 81 agtgctgggctccattggtccttaaggatgtcaaggca 44
>gb|CA754667.1|CA754667 BR030005001_BR030_E11_85_083.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030005001_BR030_E11_85_083.ab1 similar to
ubiquitin-conjugating enzyme OsUBC5a [Oryza sativa
(japonica cultivar-group)], mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 136 agtgctgggctccattggtccttaaggatgtcaaggca 99
>gb|CA999967.1|CA999967 S234L_D06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 524
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 147 agtgctgggctccattggtccttaaggatgtcaaggca 110
>gb|CB000215.1|CB000215 S345T_B07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 240 agtgctgggctccattggtccttaaggatgtcaaggca 203
>gb|CF299363.1|CF299363 7LEAF--03-F17.b1 Rice leaf plasmid cDNA library II (7LEAF) Oryza
sativa (japonica cultivar-group) cDNA clone
7LEAF--03-F17, mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 417 agtgctgggctccattggtccttaaggatgtcaaggca 380
>gb|CF299364.1|CF299364 7LEAF--03-F17.g1 Rice leaf plasmid cDNA library II (7LEAF) Oryza
sativa (japonica cultivar-group) cDNA clone
7LEAF--03-F17, mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 419 agtgctgggctccattggtccttaaggatgtcaaggca 456
>gb|CV720784.1|CV720784 YBH--01-N10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--01-N10, mRNA sequence
Length = 453
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 351 agtgctgggctccattggtccttaaggatgtcaaggca 314
>gb|CV728679.1|CV728679 FLO--01-C08.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-C08,
mRNA sequence
Length = 501
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 401 agtgctgggctccattggtccttaaggatgtcaaggca 364
>gb|CV728680.1|CV728680 FLO--01-C08.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-C08,
mRNA sequence
Length = 496
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 359 agtgctgggctccattggtccttaaggatgtcaaggca 396
>gb|CV732417.1|CV732417 FLO--06-O05.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-O05,
mRNA sequence
Length = 492
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 403 agtgctgggctccattggtccttaaggatgtcaaggca 366
>gb|CV732418.1|CV732418 FLO--06-O05.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-O05,
mRNA sequence
Length = 493
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 352 agtgctgggctccattggtccttaaggatgtcaaggca 389
>dbj|AB074411.1| Oryza sativa (japonica cultivar-group) mRNA for
ubiquitin-conjugating enzyme OsUBC5a, complete cds
Length = 731
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 393 agtgctgggctccattggtccttaaggatgtcaaggca 356
>dbj|AK063826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A09, full
insert sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 405 agtgctgggctccattggtccttaaggatgtcaaggca 368
>dbj|AK099284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023129D13, full
insert sequence
Length = 754
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 395 agtgctgggctccattggtccttaaggatgtcaaggca 358
>gb|AACV01002031.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002031, whole
genome shotgun sequence
Length = 50331
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 23019 agtgctgggctccattggtccttaaggatgtcaaggca 22982
>ref|NM_192451.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1125
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 743 agtgctgggctccattggtccttaaggatgtcaaggca 706
>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0694A04
Length = 141476
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 121934 agtgctgggctccattggtccttaaggatgtcaaggca 121971
>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0684E06
Length = 147004
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 666 agtgctgggctccatttgtccttgagaatgtcgaggca 703
|||||||||||||||| |||||| || ||||| |||||
Sbjct: 10491 agtgctgggctccattggtccttaaggatgtcaaggca 10528
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,586,851
Number of Sequences: 438736
Number of extensions: 1586851
Number of successful extensions: 8136
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7936
Number of HSP's gapped (non-prelim): 193
length of query: 1104
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1083
effective length of database: 2,791,206,460
effective search space: 3022876596180
effective search space used: 3022876596180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)