BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK111555.1| Oryza sativa (japonica cultivar-group) cDNA... 751 0.0
ref|NM_197780.1| Oryza sativa (japonica cultivar-group) put... 729 0.0
gb|CB662971.1|CB662971 OSJNEd07H10.r OSJNEd Oryza sativa (j... 654 0.0
gb|CB683257.1|CB683257 OSJNEf11G15.f OSJNEf Oryza sativa (j... 646 0.0
gb|CB659259.1|CB659259 OSJNEc16B11.r OSJNEc Oryza sativa (j... 626 e-177
gb|CB654950.1|CB654950 OSJNEc07O06.r OSJNEc Oryza sativa (j... 611 e-172
gb|CB654996.1|CB654996 OSJNEc07P17.f OSJNEc Oryza sativa (j... 607 e-171
gb|CB656194.1|CB656194 OSJNEc10E04.f OSJNEc Oryza sativa (j... 571 e-160
gb|CB650781.1|CB650781 OSJNEb15G22.f OSJNEb Oryza sativa (j... 557 e-156
gb|CB656195.1|CB656195 OSJNEc10E04.r OSJNEc Oryza sativa (j... 549 e-153
gb|CB650782.1|CB650782 OSJNEb15G22.r OSJNEb Oryza sativa (j... 545 e-152
gb|CB654997.1|CB654997 OSJNEc07P17.r OSJNEc Oryza sativa (j... 545 e-152
gb|CB662970.1|CB662970 OSJNEd07H10.f OSJNEd Oryza sativa (j... 432 e-118
gb|CV152500.1|CV152500 LS46-S.SEQ Cold stressed rice cDNA l... 406 e-110
gb|AU030812.1|AU030812 AU030812 Rice cDNA from immature lea... 392 e-106
gb|CB659258.1|CB659258 OSJNEc16B11.f OSJNEc Oryza sativa (j... 377 e-102
gb|CB000323.1|CB000323 S345U_C12 Rice cold stress germinati... 365 4e-098
gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10... 287 7e-075
gb|AACV01022119.1| Oryza sativa (japonica cultivar-group) c... 287 7e-075
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 287 7e-075
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 287 7e-075
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 287 7e-075
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 287 7e-075
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 287 7e-075
gb|AU183937.1|AU183937 AU183937 Rice cDNA from immature lea... 216 2e-053
dbj|AK121850.1| Oryza sativa (japonica cultivar-group) cDNA... 192 3e-046
gb|AY224528.1| Oryza sativa (japonica cultivar-group) isola... 192 3e-046
ref|NM_187345.1| Oryza sativa (japonica cultivar-group), mRNA 192 3e-046
gb|CB667866.1|CB667866 OSJNEd15G13.r OSJNEd Oryza sativa (j... 190 1e-045
gb|AU095208.1|AU095208 AU095208 Rice cDNA from immature lea... 182 3e-043
gb|AU095209.1|AU095209 AU095209 Rice cDNA from immature lea... 182 3e-043
gb|CB673754.1|CB673754 OSJNEe08H04.r OSJNEe Oryza sativa (j... 121 9e-025
gb|AU095155.1|AU095155 AU095155 Rice cDNA from immature lea... 109 3e-021
dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chro... 98 1e-017
dbj|AP003864.4| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
gb|AACV01016278.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 98 1e-017
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 98 1e-017
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 98 1e-017
gb|CV722889.1|CV722889 root--01-O01.g1 Rice root lambda pha... 80 3e-012
gb|AU070418.1|AU070418 AU070418 Rice green shoot Oryza sati... 72 7e-010
>dbj|AK111555.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051E04, full
insert sequence
Length = 1228
Score = 751 bits (379), Expect = 0.0
Identities = 693/795 (87%), Gaps = 12/795 (1%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 994 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 935
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 934 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 875
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 874 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 815
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 814 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 755
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 754 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 695
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 694 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 635
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 634 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 575
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 574 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 515
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 514 ccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcattg 455
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|| ||||| | ||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 454 ccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaaccactgaca 395
Query: 854 tcagaatcttcactgtcagtttcaaattcctcaccatcagacacct---ccgccttgcca 910
|| |||||||||||||||||||||||||| |||||||| || |||| | ||||||||
Sbjct: 394 tctgaatcttcactgtcagtttcaaattcttcaccatcggagaccttcccggccttgccg 335
Query: 911 agcgacgacggcagcttcc------cggcagcgaggcgctccctctccttggaca-cgac 963
|||| || |||||||||| |||| |||||||| ||||||||||||| || || |
Sbjct: 334 agcggcgcgggcagcttcccccctgcggcggcgaggcggtccctctccttggccaccgcc 275
Query: 964 g--cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttgatg 1021
| |||||||| || ||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct: 274 gcccccctggatgtggacggggacgacctgtccaggtgcttctcgagcacgtccttgatg 215
Query: 1022 cgcttccggtccatc 1036
|||||||||||||||
Sbjct: 214 cgcttccggtccatc 200
>ref|NM_197780.1| Oryza sativa (japonica cultivar-group) putative casein kinase II beta
subunit (OSJNBa0027P10.8), mRNA
Length = 1229
Score = 729 bits (368), Expect = 0.0
Identities = 693/798 (86%), Gaps = 15/798 (1%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 1006 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 947
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 946 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 887
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 886 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 827
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 826 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 767
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 766 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 707
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 706 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 647
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 646 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 587
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 586 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 527
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 526 ccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcattg 467
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|| ||||| | ||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 466 ccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaaccactgaca 407
Query: 854 tcagaatcttcactgtcagtttcaaattcct---caccatcagacacct---ccgccttg 907
|| |||||||||||||||||||||||||| | ||||||| || |||| | ||||||
Sbjct: 406 tctgaatcttcactgtcagtttcaaattcttctgcaccatcggagaccttcccggccttg 347
Query: 908 ccaagcgacgacggcagcttcc------cggcagcgaggcgctccctctccttggaca-c 960
|| |||| || |||||||||| |||| |||||||| ||||||||||||| || |
Sbjct: 346 ccgagcggcgcgggcagcttcccccctgcggcggcgaggcggtccctctccttggccacc 287
Query: 961 gacg--cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgtccttg 1018
| || |||||||| || ||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 286 gccgcccccctggatgtggacggggacgacctgtccaggtgcttctcgagcacgtccttg 227
Query: 1019 atgcgcttccggtccatc 1036
||||||||||||||||||
Sbjct: 226 atgcgcttccggtccatc 209
>gb|CB662971.1|CB662971 OSJNEd07H10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07H10 3', mRNA sequence
Length = 920
Score = 654 bits (330), Expect = 0.0
Identities = 554/629 (88%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 280 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 339
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 340 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 399
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 400 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 459
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 460 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 519
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 520 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 579
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 580 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 639
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 640 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 699
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 700 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 759
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 760 ccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcattg 819
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|| || | | ||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 820 ccgcgncaactgcagaaccatgaaatccaagatgtgtcctctccctcagaaccactgaca 879
Query: 854 tcagaatcttcactgtcagtttcaaattc 882
|| ||||||||||||||||||||||||||
Sbjct: 880 tctgaatcttcactgtcagtttcaaattc 908
>gb|CB683257.1|CB683257 OSJNEf11G15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11G15 5', mRNA sequence
Length = 717
Score = 646 bits (326), Expect = 0.0
Identities = 555/630 (88%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaaccctt-ggagtgtattgctgtgacgg 312
||||||||| ||||||||||||||||||| |||| | || ||| || ||||| || ||
Sbjct: 689 tgtcatgactgcttgtgaagtttgaagccaaaaaacttttggaacatactgctgagatgg 630
Query: 313 cttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaa 372
||| || ||||||||||| | || ||||||||||| ||||| |||||||| ||||||||
Sbjct: 629 cttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaa 570
Query: 373 gtatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcattt 432
||| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 569 gtacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacattt 510
Query: 433 cggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggca 492
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| ||
Sbjct: 509 tggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagaca 450
Query: 493 gggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctc 552
||| |||||||| ||||| |||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 449 gggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctc 390
Query: 553 caacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacag 612
|||||||||||| ||||||||||||||||| || |||| |||||||||||| || |||||
Sbjct: 389 caacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacag 330
Query: 613 catctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattaga 672
|||||||||||||||||| |||||||||||||||||||| || ||| | ||| |||||||
Sbjct: 329 catctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattaga 270
Query: 673 agactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcag 732
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 269 agactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcag 210
Query: 733 accacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcatt 792
|||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 209 accacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcatt 150
Query: 793 gcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcac 852
||| ||||| | ||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct: 149 gccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaaccactgac 90
Query: 853 atcagaatcttcactgtcagtttcaaattc 882
|| ||||||||||||||||||||||||||
Sbjct: 89 atgtgaatcttcactgtcagtttcaaattc 60
>gb|CB659259.1|CB659259 OSJNEc16B11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B11 3', mRNA sequence
Length = 842
Score = 626 bits (316), Expect = e-177
Identities = 535/608 (87%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 235 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 294
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 295 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 354
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 355 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 414
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 415 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 474
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 475 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 534
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 535 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 594
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 595 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 654
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 655 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 714
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 715 ccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcattg 774
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|| ||||| | ||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct: 775 ccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaaccactgaca 834
Query: 854 tcagaatc 861
|| |||||
Sbjct: 835 tctgaatc 842
>gb|CB654950.1|CB654950 OSJNEc07O06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07O06 3', mRNA sequence
Length = 887
Score = 611 bits (308), Expect = e-172
Identities = 521/592 (88%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 285 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 344
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 345 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 404
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 405 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 464
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 465 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 524
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 525 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 584
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 585 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 644
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 645 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 704
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 705 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 764
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 765 ccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaagaactcattg 824
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
|| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 825 ccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 876
>gb|CB654996.1|CB654996 OSJNEc07P17.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07P17 5', mRNA sequence
Length = 750
Score = 607 bits (306), Expect = e-171
Identities = 526/597 (88%), Gaps = 12/597 (2%)
Strand = Plus / Minus
Query: 452 gtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtac 511
||||| || ||||||| ||||||||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 748 gtgctagacctaggaatatctgattgccntgcaggaagacagggttggccacaacagtat 689
Query: 512 accctggggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagaccc 571
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 688 acccgggggcatcttccaaagtcatagttcttgaacttctccaacattgcagccagaccc 629
Query: 572 ttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcg 631
||||||||||| || |||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 628 ttgctggttaagatatatcttgcatgaattaatccatacagcatctctgcagatgactca 569
Query: 632 attaattcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatg 691
|||||||||||||||||||| || ||| | ||| ||||||||||||| |||||||||||
Sbjct: 568 attaattcattttgctcctcagtgaacacatcaccattagaagactcgatgtctaagata 509
Query: 692 agatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatca 751
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 508 agatcaagtgcatagtcataatatggcacctgattgctcagaccacaaaggttgaaatca 449
Query: 752 tcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaac 811
||||||||||| ||||||||||||||||| ||||| |||||||| ||||| | ||||||
Sbjct: 448 tcctgtatataatcatcatcgatctcacagaagaactcattgccgcgcaaactgcagaac 389
Query: 812 catgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtca 871
||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 388 catgaaatccaagatgtgtcctctccctcagaaccactgacatctgaatcttcactgtca 329
Query: 872 gtttcaaattcctcaccatcagacacct---ccgccttgccaagcgacgacggcagcttc 928
||||||||||| |||||||| || |||| | |||||||| |||| || |||||||||
Sbjct: 328 gtttcaaattcttcaccatcggagaccttcccggccttgccgagcggcgcgggcagcttc 269
Query: 929 c------cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagac 979
| |||| |||||||| ||||||||||||| || || || |||||||| || |||
Sbjct: 268 ccccctgcggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggac 209
Query: 980 ggcgacgacctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 208 ggggacgacctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 152
>gb|CB656194.1|CB656194 OSJNEc10E04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10E04 5', mRNA sequence
Length = 714
Score = 571 bits (288), Expect = e-160
Identities = 497/564 (88%), Gaps = 12/564 (2%)
Strand = Plus / Minus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
||||| ||||| |||||||| ||||| |||| ||||||||| |||||||| |||||||||
Sbjct: 713 ggaagacagggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttg 654
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||||||||||||||||||| | ||||||||||||||| || |||| ||||||||||||
Sbjct: 653 aacttctccaacattgcagccaaacccttgctggttaagatatatcttgcatgaattaat 594
Query: 605 ccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgtca 664
|| ||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||
Sbjct: 593 ccatacagcatctctgcagatgactcaattaattcattttgctcctcagtgaacacatca 534
Query: 665 tcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctga 724
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 533 ccattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctga 474
Query: 725 ttactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaag 784
|| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 473 ttgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaag 414
Query: 785 aattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaa 844
|| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| |||
Sbjct: 413 aactcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaa 354
Query: 845 ccactcacatcagaatcttcactgtcagtttcaaattcctcaccatcagacacct---cc 901
||||| ||||| |||||||||||||||||||||||||| |||||||| || |||| |
Sbjct: 353 ccactgacatctgaatcttcactgtcagtttcaaattcttcaccatcggagaccttcccg 294
Query: 902 gccttgccaagcgacgacggcagcttcc------cggcagcgaggcgctccctctccttg 955
|||||||| |||| || |||||||||| |||| |||||||| ||||||||||||
Sbjct: 293 gccttgccgagcggcgcgggcagcttcccccctgcggcggcgaggcggtccctctccttg 234
Query: 956 gaca-cgacg--cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcg 1012
| || || || |||||||| || ||||| |||||||| |||||||||||||||||| ||
Sbjct: 233 gccaccgccgcccccctggatgtggacggggacgacctgtccaggtgcttctcgagcacg 174
Query: 1013 tccttgatgcgcttccggtccatc 1036
||||||||||||||||||||||||
Sbjct: 173 tccttgatgcgcttccggtccatc 150
>gb|CB650781.1|CB650781 OSJNEb15G22.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15G22 5', mRNA sequence
Length = 731
Score = 557 bits (281), Expect = e-156
Identities = 498/567 (87%), Gaps = 15/567 (2%)
Strand = Plus / Minus
Query: 485 ggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttg 544
||||| ||||| |||||||| ||||| |||| ||||||||| |||||||| |||||||||
Sbjct: 729 ggaagacagggttggccacaccagtatacccgggggcatcttccaaagtcatagttcttg 670
Query: 545 aacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaa 604
|||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||
Sbjct: 669 aacttctccaacattgcagccagacccttgctggttaagatatatcttgcatgaattaat 610
Query: 605 ccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgtca 664
|| ||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||
Sbjct: 609 ccatacagcatctctgcagatgactcaattaattcattttgctcctcagtgaacacatca 550
Query: 665 tcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctga 724
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 549 ccattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctga 490
Query: 725 ttactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaag 784
|| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 489 ttgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaag 430
Query: 785 aattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaa 844
|| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| |||
Sbjct: 429 aactcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaa 370
Query: 845 ccactcacatcagaatcttcactgtcagtttcaaattcct---caccatcagacacct-- 899
||||| ||||| |||||||||||||||||||||||||| | ||||||| || ||||
Sbjct: 369 ccactgacatctgaatcttcactgtcagtttcaaattcttctgcaccatcggagaccttc 310
Query: 900 -ccgccttgccaagcgacgacggcagcttcc------cggcagcgaggcgctccctctcc 952
| |||||||| |||| || |||||||||| |||| |||||||| |||||||||
Sbjct: 309 ccggccttgccgagcggcgcgggcagcttcccccctgcggcggcgaggcggtccctctcc 250
Query: 953 ttggaca-cgacg--cccctggaggtagacggcgacgacctctccaggtgcttctcgagc 1009
|||| || || || |||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct: 249 ttggccaccgccgcccccctggatgtggacggggacgacctgtccaggtgcttctcgagc 190
Query: 1010 gcgtccttgatgcgcttccggtccatc 1036
||||||||||||||||||||||||||
Sbjct: 189 acgtccttgatgcgcttccggtccatc 163
>gb|CB656195.1|CB656195 OSJNEc10E04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10E04 3', mRNA sequence
Length = 818
Score = 549 bits (277), Expect = e-153
Identities = 482/549 (87%), Gaps = 1/549 (0%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 265 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 324
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 325 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 384
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 385 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 444
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 445 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 504
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 505 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 564
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| | ||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 565 aacattgcagccaaacccttgctggttaagatatatcttgcatgaattaatccatacagc 624
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 625 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 684
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 685 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 744
Query: 734 ccacacaggttaaaatcatcctgtatatagtcat-catcgatctcacaaaagaattcatt 792
||||| ||||| ||||||||||||||||| |||| ||||||||||||| ||||| |||||
Sbjct: 745 ccacaaaggttgaaatcatcctgtatataatcatccatcgatctcacagaagaactcatt 804
Query: 793 gcctcgcaa 801
||| |||||
Sbjct: 805 gccgcgcaa 813
>gb|CB650782.1|CB650782 OSJNEb15G22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15G22 3', mRNA sequence
Length = 768
Score = 545 bits (275), Expect = e-152
Identities = 461/523 (88%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 246 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 305
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 306 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 365
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 366 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 425
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 426 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 485
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 486 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 545
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 546 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 605
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 606 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 665
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 666 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 725
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatct 776
||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 726 ccacaaaggttgaaatcatcctgtatataatcatcatcgatct 768
>gb|CB654997.1|CB654997 OSJNEc07P17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07P17 3', mRNA sequence
Length = 814
Score = 545 bits (275), Expect = e-152
Identities = 461/523 (88%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 292 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 351
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 352 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 411
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 412 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 471
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 472 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 531
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 532 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 591
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 592 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 651
Query: 614 atctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcattagaa 673
||||||||||||||||| |||||||||||||||||||| || ||| | ||| ||||||||
Sbjct: 652 atctctgcagatgactcaattaattcattttgctcctcagtgaacacatcaccattagaa 711
Query: 674 gactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactcaga 733
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 712 gactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgattgctcaga 771
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatct 776
||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 772 ccacaaaggttgaaatcatcctgtatataatcatcatcgatct 814
>gb|CB662970.1|CB662970 OSJNEd07H10.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07H10 5', mRNA sequence
Length = 740
Score = 432 bits (218), Expect = e-118
Identities = 402/460 (87%), Gaps = 15/460 (3%)
Strand = Plus / Minus
Query: 592 tgcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctc 651
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 tgcatgaattaatccatacagcatctctgcagatgactcaattaattcattttgctcctc 681
Query: 652 ggtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcata 711
|| ||| | ||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 680 agtgaacacatcaccattagaagactcgatgtctaagataagatcaagtgcatagtcata 621
Query: 712 atatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatc 771
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 620 atatggcacctgattgctcagaccacaaaggttgaaatcatcctgtatataatcatcatc 561
Query: 772 gatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtc 831
||||||||| ||||| |||||||| ||||| | ||||||||||||||||| || |||||
Sbjct: 560 gatctcacagaagaactcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtc 501
Query: 832 ctctccctcggaaccactcacatcagaatcttcactgtcagtttcaaattcct---cacc 888
||||||||| |||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 500 ctctccctcagaaccactgacatctgaatcttcactgtcagtttcaaattcttctgcacc 441
Query: 889 atcagacacct---ccgccttgccaagcgacgacggcagcttcc------cggcagcgag 939
||| || |||| | |||||||| |||| || |||||||||| |||| |||||
Sbjct: 440 atcggagaccttcccggccttgccgagcggcgcgggcagcttcccccctgcggcggcgag 381
Query: 940 gcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacgacctctccag 996
||| ||||||||||||| || || || |||||||| || ||||| |||||||| |||||
Sbjct: 380 gcggtccctctccttggccaccgccgcccccctggatgtggacggggacgacctgtccag 321
Query: 997 gtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 gtgcttctcgagcacgtccttgatgcgcttccggtccatc 281
>gb|CV152500.1|CV152500 LS46-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 357
Score = 406 bits (205), Expect = e-110
Identities = 313/347 (90%), Gaps = 2/347 (0%)
Strand = Plus / Minus
Query: 473 gattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaag 532
||||||||||| ||||| || || |||||||| ||||| |||| ||||||||| ||||||
Sbjct: 357 gattgccctgcaggaag-canggttggccacaacagtanacccgggggcatcttccaaag 299
Query: 533 tcgtagttcttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgt 592
|| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |
Sbjct: 298 tcatagttcttgaacttctccaacattgcagc-agacccttgctggttaagatatatctt 240
Query: 593 gcatgaattaaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcg 652
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 239 gcatgaattaatccatacagcatctctgcagatgactcaattaattcattttgctcctca 180
Query: 653 gtaaacccgtcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataa 712
|| ||| | ||| ||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 179 gtgaacacatcaccattagaagactcgatgtctaagataagatcaagtgcatagtcataa 120
Query: 713 tatggcacctgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcg 772
|||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 119 tatggcacctgattgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcg 60
Query: 773 atctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaat 819
|||||||| ||||| |||||||| ||||| | ||||||||||||||
Sbjct: 59 atctcacagaagaactcattgccgcgcaaactgcagaaccatgaaat 13
>gb|AU030812.1|AU030812 AU030812 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60280_2Z, mRNA sequence
Length = 645
Score = 392 bits (198), Expect = e-106
Identities = 348/398 (87%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 404 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 345
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 344 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 285
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 284 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 225
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 224 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 165
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 164 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 105
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 104 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 45
Query: 614 atctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||||| ||||||||||||||||||||
Sbjct: 44 atctctgcagatgactcaattaattcattttgctcctc 7
>gb|CB659258.1|CB659258 OSJNEc16B11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B11 5', mRNA sequence
Length = 625
Score = 377 bits (190), Expect = e-102
Identities = 346/398 (86%)
Strand = Plus / Plus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 222 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 281
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||| ||| | ||| |||||||| |||||||||
Sbjct: 282 ttttgtggcttcaagtgtggatatgtcatcaagaagaaatgtgggaatgttgtcccaaag 341
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 342 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 401
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 402 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 461
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 462 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 521
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||
Sbjct: 522 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagc 581
Query: 614 atctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||||| ||||||||||||||||||||
Sbjct: 582 atctctgcagatgactcaattaattcattttgctcctc 619
>gb|CB000323.1|CB000323 S345U_C12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 663
Score = 365 bits (184), Expect = 4e-098
Identities = 337/388 (86%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 393 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 334
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 333 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 274
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 273 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 214
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcag 493
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| ||||| |||
Sbjct: 213 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaagacag 154
Query: 494 ggctggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcc 553
|| |||||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 153 ggttggccacaacagtatacccgggggcatcttccaaagtcatagttcttgaacttctcc 94
Query: 554 aacattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagc 613
||||||||||| ||||||||||||||||| || |||| |||||||||||| | ||||||
Sbjct: 93 aacattgcagccagacccttgctggttaagatatatcttgcatgaattaatgcatacagc 34
Query: 614 atctctgcagatgactcgattaattcat 641
||||||||||||||||| ||||||||||
Sbjct: 33 atctctgcagatgactcaattaattcat 6
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete
sequence
Length = 141307
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 107412 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 107353
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 107352 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 107293
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 107292 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 107233
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 107232 cactgacatctgaatcttcactgtcagtttcaaattc 107196
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 108043 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 107984
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 107983 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 107924
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 107923 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 107877
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 107785 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 107726
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 107725 ctctgcagatgactcaattaattcattttgctcctc 107690
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 104407 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 104348
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 104347 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 104298
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 108699 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 108640
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 108639 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 108580
Query: 374 ta 375
||
Sbjct: 108579 ta 108578
>gb|AACV01022119.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022119, whole
genome shotgun sequence
Length = 12494
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 8295 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 8236
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 8235 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 8176
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 8175 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 8116
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 8115 cactgacatctgaatcttcactgtcagtttcaaattc 8079
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 8926 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 8867
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 8866 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 8807
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 8806 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 8760
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 8668 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 8609
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 8608 ctctgcagatgactcaattaattcattttgctcctc 8573
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 5289 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 5230
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5229 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 5180
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 9582 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 9523
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 9522 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 9463
Query: 374 ta 375
||
Sbjct: 9462 ta 9461
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 3715323 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 3715264
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 3715263 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 3715204
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 3715203 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 3715144
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 3715143 cactgacatctgaatcttcactgtcagtttcaaattc 3715107
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 3715954 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 3715895
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 3715894 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 3715835
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 3715834 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 3715788
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 3715696 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 3715637
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 3715636 ctctgcagatgactcaattaattcattttgctcctc 3715601
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 3712318 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 3712259
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3712258 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 3712209
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 3716610 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 3716551
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 3716550 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 3716491
Query: 374 ta 375
||
Sbjct: 3716490 ta 3716489
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 9765640 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 9765581
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 9765580 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 9765521
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 9765520 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 9765461
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 9765460 cactgacatctgaatcttcactgtcagtttcaaattc 9765424
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 9766271 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 9766212
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 9766211 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 9766152
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 9766151 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 9766105
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 9766013 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 9765954
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 9765953 ctctgcagatgactcaattaattcattttgctcctc 9765918
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 9762634 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 9762575
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9762574 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 9762525
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 9766927 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 9766868
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 9766867 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 9766808
Query: 374 ta 375
||
Sbjct: 9766807 ta 9766806
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 20631434 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 20631375
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 20631374 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 20631315
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 20631314 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 20631255
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 20631254 cactgacatctgaatcttcactgtcagtttcaaattc 20631218
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 20632065 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 20632006
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 20632005 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 20631946
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 20631945 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 20631899
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 20631807 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 20631748
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 20631747 ctctgcagatgactcaattaattcattttgctcctc 20631712
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 20628428 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 20628369
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 20628368 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 20628319
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 20632721 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 20632662
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 20632661 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 20632602
Query: 374 ta 375
||
Sbjct: 20632601 ta 20632600
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 21792729 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 21792670
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 21792669 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 21792610
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 21792609 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 21792550
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 21792549 cactgacatctgaatcttcactgtcagtttcaaattc 21792513
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 21793360 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 21793301
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 21793300 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 21793241
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 21793240 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 21793194
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 21793102 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 21793043
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 21793042 ctctgcagatgactcaattaattcattttgctcctc 21793007
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 21789724 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 21789665
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21789664 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 21789615
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 21794016 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 21793957
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 21793956 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 21793897
Query: 374 ta 375
||
Sbjct: 21793896 ta 21793895
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 287 bits (145), Expect = 7e-075
Identities = 199/217 (91%)
Strand = Plus / Minus
Query: 666 cattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgat 725
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 21804392 cattagaagactcgatgtctaagataagatcaagtgcatagtcataatatggcacctgat 21804333
Query: 726 tactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaaga 785
| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 21804332 tgctcagaccacaaaggttgaaatcatcctgtatataatcatcatcgatctcacagaaga 21804273
Query: 786 attcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaac 845
| |||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct: 21804272 actcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaac 21804213
Query: 846 cactcacatcagaatcttcactgtcagtttcaaattc 882
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 21804212 cactgacatctgaatcttcactgtcagtttcaaattc 21804176
Score = 172 bits (87), Expect = 3e-040
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||||||||||||||||||||| | | ||||| ||||| ||||| ||||||||||
Sbjct: 21805023 tgccttggtacttggatcttggataatgtaaatcttcacattttggacagtatatcttca 21804964
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
| ||||| || ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct: 21804963 ctgtgctagacctaggaatatctgattgccctgcaggaagacagggttggccacaacagt 21804904
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
| |||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct: 21804903 atacccgggggcatcttccaaagtcatagttcttgaacttctccaac 21804857
Score = 135 bits (68), Expect = 6e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 556 cattgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcat 615
||||||||| ||||||||||||||||| || |||| |||||||||||| || ||||||||
Sbjct: 21804765 cattgcagccagacccttgctggttaagatatatcttgcatgaattaatccatacagcat 21804706
Query: 616 ctctgcagatgactcgattaattcattttgctcctc 651
||||||||||||||| ||||||||||||||||||||
Sbjct: 21804705 ctctgcagatgactcaattaattcattttgctcctc 21804670
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 21801387 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 21801328
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21801327 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 21801278
Score = 91.7 bits (46), Expect = 8e-016
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 21805679 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 21805620
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 21805619 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 21805560
Query: 374 ta 375
||
Sbjct: 21805559 ta 21805558
>gb|AU183937.1|AU183937 AU183937 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61557, mRNA sequence
Length = 448
Score = 216 bits (109), Expect = 2e-053
Identities = 251/295 (85%), Gaps = 15/295 (5%)
Strand = Plus / Minus
Query: 757 tatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatga 816
|||||| ||||||||||||||||| ||||| |||||||| ||||| | |||||||||||
Sbjct: 448 tatataatcatcatcgatctcacagaagaactcattgccgcgcaaactgcagaaccatga 389
Query: 817 aatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
|||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 388 aatccaagatgtgtcctctccctcagaaccactgacatctgaatcttcactgtcagtttc 329
Query: 877 aaattcct---caccatcagacacct---ccgccttgccaagcgacgacggcagcttcc- 929
|||||| | ||||||| || |||| | |||||||| |||| || ||||||||||
Sbjct: 328 aaattcttctgcaccatcggagaccttcccggccttgccgagcggcgcgggcagcttccc 269
Query: 930 -----cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacgg 981
|||| |||||||| ||||||||||||| || || || |||||||| || |||||
Sbjct: 268 ccctgcggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacgg 209
Query: 982 cgacgacctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 208 ggacgacctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 154
>dbj|AK121850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101L24, full
insert sequence
Length = 1630
Score = 192 bits (97), Expect = 3e-046
Identities = 432/541 (79%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 943 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 884
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|||||||| | |||||||| | ||||| || || || || |||||||||||||| ||
Sbjct: 883 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagtacta 824
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| | | ||||||||| || |||| | ||||| || |||||||| || || |
Sbjct: 823 gatcggtgtatatctgattgtccaactggtaaacagggttgaccacagcaataaactcgt 764
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || ||||| ||| ||||||||| ||||||||| | || || |||
Sbjct: 763 gggcatcttccaaaatcatagtttttgtacttctccagcattgcagccaatcctttactg 704
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| |||||||||||||||||||| | || || | ||||||||||| |||||| | ||
Sbjct: 703 gtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactccactagc 644
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|| ||||| || ||||| ||| |||| | | |||||| || || ||||| |||||||||
Sbjct: 643 tcgttttgttcttcggtgaacatgtcaccgtgagaagattcgatatctaaaatgagatca 584
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||||||||||||||| || ||| | || || ||||| ||||| || ||||| |||
Sbjct: 583 agagcataatcataatatggaacttgactgctaagcccacagaggttgaagtcatcttgt 524
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
||||| |||||||| | |||||| ||||||||||| |||| | | ||| ||||||||
Sbjct: 523 atataatcatcatcaacctcacagaagaattcattccctcttagactgcagtaccatgaa 464
Query: 818 atccaggacgtg-tcctctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
||||| || ||| |||||||| || |||||||| ||||| || ||||||| |||| |||
Sbjct: 463 atccatga-gtgatcctctccgtcagaaccactaacatctgatgcttcactatcagattc 405
Query: 877 a 877
|
Sbjct: 404 a 404
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 258 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 201
>gb|AY224528.1| Oryza sativa (japonica cultivar-group) isolate 21042 possible
protein kinase CK2 regulatory subunit mRNA, partial cds
Length = 735
Score = 192 bits (97), Expect = 3e-046
Identities = 432/541 (79%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 656 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 597
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|||||||| | |||||||| | ||||| || || || || |||||||||||||| ||
Sbjct: 596 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagtacta 537
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| | | ||||||||| || |||| | ||||| || |||||||| || || |
Sbjct: 536 gatcggtgtatatctgattgtccaactggtaaacagggttgaccacagcaataaactcgt 477
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || ||||| ||| ||||||||| ||||||||| | || || |||
Sbjct: 476 gggcatcttccaaaatcatagtttttgtacttctccagcattgcagccaatcctttactg 417
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| |||||||||||||||||||| | || || | ||||||||||| |||||| | ||
Sbjct: 416 gtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactccactagc 357
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|| ||||| || ||||| ||| |||| | | |||||| || || ||||| |||||||||
Sbjct: 356 tcgttttgttcttcggtgaacatgtcaccgtgagaagattcgatatctaaaatgagatca 297
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||||||||||||||| || ||| | || || ||||| ||||| || ||||| |||
Sbjct: 296 agagcataatcataatatggaacttgactgctaagcccacagaggttgaagtcatcttgt 237
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
||||| |||||||| | |||||| ||||||||||| |||| | | ||| ||||||||
Sbjct: 236 atataatcatcatcaacctcacagaagaattcattccctcttagactgcagtaccatgaa 177
Query: 818 atccaggacgtg-tcctctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
||||| || ||| |||||||| || |||||||| ||||| || ||||||| |||| |||
Sbjct: 176 atccatga-gtgatcctctccgtcagaaccactaacatctgatgcttcactatcagattc 118
Query: 877 a 877
|
Sbjct: 117 a 117
>ref|NM_187345.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 867
Score = 192 bits (97), Expect = 3e-046
Identities = 432/541 (79%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 788 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 729
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|||||||| | |||||||| | ||||| || || || || |||||||||||||| ||
Sbjct: 728 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagtacta 669
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| | | ||||||||| || |||| | ||||| || |||||||| || || |
Sbjct: 668 gatcggtgtatatctgattgtccaactggtaaacagggttgaccacagcaataaactcgt 609
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || ||||| ||| ||||||||| ||||||||| | || || |||
Sbjct: 608 gggcatcttccaaaatcatagtttttgtacttctccagcattgcagccaatcctttactg 549
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| |||||||||||||||||||| | || || | ||||||||||| |||||| | ||
Sbjct: 548 gtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactccactagc 489
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|| ||||| || ||||| ||| |||| | | |||||| || || ||||| |||||||||
Sbjct: 488 tcgttttgttcttcggtgaacatgtcaccgtgagaagattcgatatctaaaatgagatca 429
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||||||||||||||| || ||| | || || ||||| ||||| || ||||| |||
Sbjct: 428 agagcataatcataatatggaacttgactgctaagcccacagaggttgaagtcatcttgt 369
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
||||| |||||||| | |||||| ||||||||||| |||| | | ||| ||||||||
Sbjct: 368 atataatcatcatcaacctcacagaagaattcattccctcttagactgcagtaccatgaa 309
Query: 818 atccaggacgtg-tcctctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
||||| || ||| |||||||| || |||||||| ||||| || ||||||| |||| |||
Sbjct: 308 atccatga-gtgatcctctccgtcagaaccactaacatctgatgcttcactatcagattc 250
Query: 877 a 877
|
Sbjct: 249 a 249
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 103 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 46
>gb|CB667866.1|CB667866 OSJNEd15G13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15G13 3', mRNA sequence
Length = 841
Score = 190 bits (96), Expect = 1e-045
Identities = 369/460 (80%)
Strand = Plus / Plus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 360 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 419
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|||||||| | |||||||| | ||||| || || || || |||||||||||||| ||
Sbjct: 420 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagtacta 479
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| | | ||||||||| || |||| | ||||| || |||||||| || || |
Sbjct: 480 gatcggtgtatatctgattgtccaactggtaaacagggttgaccacagcaataaactcgt 539
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || ||||| ||| ||||||||| ||||||||| | || || |||
Sbjct: 540 gggcatcttccaaaatcatagtttttgtacttctccagcattgcagccaatcctttactg 599
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| |||||||||||||||||||| | || || | ||||||||||| |||||| | ||
Sbjct: 600 gtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactccactagc 659
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
|| ||||| || ||||| ||| |||| | | |||||| || || ||||| |||||||||
Sbjct: 660 tcgttttgttcttcggtgaacatgtcaccgtgagaagattcgatatctaaaatgagatca 719
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||||||||||||||| || ||| | || || ||||| ||||| || ||||| |||
Sbjct: 720 agagcataatcataatatggaacttgactgctaagcccacagaggttgaagtcatcttgt 779
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctc 797
||||| |||||||| | |||||| ||||||||||| ||||
Sbjct: 780 atataatcatcatcaacctcacagaagaattcattccctc 819
>gb|AU095208.1|AU095208 AU095208 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60641, mRNA sequence
Length = 478
Score = 182 bits (92), Expect = 3e-043
Identities = 200/236 (84%)
Strand = Plus / Minus
Query: 254 tgtcatgacggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggc 313
||||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 237 tgtcatgactgcttgtgaagtttgaagccaaaaacttttggaacatactgctgagatggc 178
Query: 314 ttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaag 373
|| || ||||||||||| | || ||||||||||| ||||| |||||||| |||||||||
Sbjct: 177 ttttgtggcttcaagtgtggatatgtcatcaggaagagatgtgggaatgttgtcccaaag 118
Query: 374 tatgatccatcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttc 433
|| | ||| || ||||||||||||||||||||||||||||| | | ||||| |||||
Sbjct: 117 tacgctccgtcaatgttgccttggtacttggatcttggataatgtaaatcttcacatttt 58
Query: 434 ggacaatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaag 489
||||| ||||||||||| ||||| || ||||||| ||||||||||||||| |||||
Sbjct: 57 ggacagtatatcttcactgtgctagacctaggaatatctgattgccctgcaggaag 2
>gb|AU095209.1|AU095209 AU095209 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60641, mRNA sequence
Length = 473
Score = 182 bits (92), Expect = 3e-043
Identities = 223/263 (84%), Gaps = 14/263 (5%)
Strand = Plus / Minus
Query: 788 tcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaacca 847
|||||||| ||||| | ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 471 tcattgccgcgcaaactgcagaaccatgaaatccaagatgtgtcctctccctcagaacca 412
Query: 848 ctcacatcagaatcttcactgtcagtttcaaattcct---caccatcagacacct---cc 901
|| ||||| |||||||||||||||||||||||||| | ||||||| || |||| |
Sbjct: 411 ctgacatctgaatcttcactgtcagtttcaaattcttctgcaccatcggagaccttcccg 352
Query: 902 gccttgccaagcgacgacggcagcttcc-----cggcagcgaggcgctccctctccttgg 956
|||||||| |||| || |||||||||| |||| |||||||| |||||||||||||
Sbjct: 351 gccttgccgagcggcgcgggcagcttccccctgcggcggcgaggcggtccctctccttgg 292
Query: 957 aca-cgacg--cccctggaggtagacggcgacgacctctccaggtgcttctcgagcgcgt 1013
|| || || |||||||| || ||||| |||||||| |||||||||||||||||| |||
Sbjct: 291 ccaccgccgcccccctggatgtggacggggacgacctgtccaggtgcttctcgagcacgt 232
Query: 1014 ccttgatgcgcttccggtccatc 1036
|||||||||||||||||||||||
Sbjct: 231 ccttgatgcgcttccggtccatc 209
>gb|CB673754.1|CB673754 OSJNEe08H04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08H04 3', mRNA sequence
Length = 719
Score = 121 bits (61), Expect = 9e-025
Identities = 235/293 (80%)
Strand = Plus / Plus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 409 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 468
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|||||||| | |||||||| | ||||| || || || || |||||||||||||| ||
Sbjct: 469 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagtacta 528
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
|||| | | ||||||||| || |||| | ||||| || |||||||| || || |
Sbjct: 529 gatcggtgtatatctgattgtccaactggtaaacagggttgaccacagcaataaactcgt 588
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| ||||| || ||||| ||| ||||||||| ||||||||| | || || |||
Sbjct: 589 gggcatcttccaaaatcatagtttttgtacttctccagcattgcagccaatcctttactg 648
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
|| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 649 gtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 701
>gb|AU095155.1|AU095155 AU095155 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60280, mRNA sequence
Length = 321
Score = 109 bits (55), Expect = 3e-021
Identities = 98/110 (89%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 930 cggcagcgaggcgctccctctccttggaca-cgacg--cccctggaggtagacggcgacg 986
|||| |||||||| ||||||||||||| || || || |||||||| || ||||| ||||
Sbjct: 318 cggcggcgaggcggtccctctccttggccaccgccgcccccctggatgtggacggggacg 259
Query: 987 acctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
|||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 acctgtccaggtgcttctcgagcacgtccttgatgcgcttccggtccatc 209
>dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ2096_F11,
*** SEQUENCING IN PROGRESS ***
Length = 139814
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Plus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 15949 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 16008
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 16009 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 16068
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 16069 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 16127
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 16128 taacatctgatgcttcactatcagattca 16156
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 17606 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 17663
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 15027 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 15082
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1058_B11
Length = 102824
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 59573 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 59514
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 59513 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 59454
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 59453 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 59395
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 59394 taacatctgatgcttcactatcagattca 59366
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 57916 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 57859
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 60495 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 60440
>gb|AACV01016278.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016278, whole
genome shotgun sequence
Length = 22118
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 2980 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 2921
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 2920 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 2861
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 2860 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 2802
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 2801 taacatctgatgcttcactatcagattca 2773
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 1323 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 1266
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 3902 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 3847
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 6090800 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 6090741
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 6090740 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 6090681
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 6090680 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 6090622
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 6090621 taacatctgatgcttcactatcagattca 6090593
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 6089143 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 6089086
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 6091722 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 6091667
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 4079877 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 4079818
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 4079817 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 4079758
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 4079757 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 4079699
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 4079698 taacatctgatgcttcactatcagattca 4079670
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 4078220 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 4078163
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 4080799 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 4080744
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 17479316 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 17479257
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 17479256 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 17479197
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 17479196 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 17479138
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 17479137 taacatctgatgcttcactatcagattca 17479109
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 17477659 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 17477602
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 17480238 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 17480183
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 97.6 bits (49), Expect = 1e-017
Identities = 171/209 (81%), Gaps = 2/209 (0%)
Strand = Plus / Minus
Query: 670 agaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattact 729
|||||| || || ||||| ||||||||||| ||||||||||||||||| || ||| | ||
Sbjct: 18467725 agaagattcgatatctaaaatgagatcaagagcataatcataatatggaacttgactgct 18467666
Query: 730 cagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattc 789
|| ||||| ||||| || ||||| |||||||| |||||||| | |||||| ||||||||
Sbjct: 18467665 aagcccacagaggttgaagtcatcttgtatataatcatcatcaacctcacagaagaattc 18467606
Query: 790 attgcctcgcaatgtacagaaccatgaaatccaggacgtg-tcctctccctcggaaccac 848
||| |||| | | ||| ||||||||||||| || ||| |||||||| || |||||||
Sbjct: 18467605 attccctcttagactgcagtaccatgaaatccatga-gtgatcctctccgtcagaaccac 18467547
Query: 849 tcacatcagaatcttcactgtcagtttca 877
| ||||| || ||||||| |||| ||||
Sbjct: 18467546 taacatctgatgcttcactatcagattca 18467518
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 990 tctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatccctgcgccgcc 1047
|||| |||||||| ||||||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 18466068 tctcgaggtgcttgtcgagcgcgtcgctgattcgcttccggtccagccccgcgccgcc 18466011
Score = 48.1 bits (24), Expect = 0.011
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactc 630
||||| |||||||||||||||||||| | || || | ||||||||||| ||||||
Sbjct: 18468647 ctggtcaaaatgtatcgtgcatgaatcagcccatataacatctctgcagctgactc 18468592
>gb|CV722889.1|CV722889 root--01-O01.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--01-O01, mRNA sequence
Length = 487
Score = 79.8 bits (40), Expect = 3e-012
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
|||||||| || || || |||||||| ||||||||||||| || |||||||||||||||
Sbjct: 357 gtcatcagaaacaggtgcgggaatgttgtcccaaagtatgcgccgtcgatgttgccttgg 416
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagt 453
|||||||| | |||||||| | ||||| || || || || ||||||||||||||
Sbjct: 417 tacttggaccgtggatagtagatgtcttcacacttggggcagtatatcttcacagt 472
>gb|AU070418.1|AU070418 AU070418 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S14885_2A, mRNA sequence
Length = 535
Score = 71.9 bits (36), Expect = 7e-010
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 984 acgacctctccaggtgcttctcgagcgcgtccttgatgcgcttccggtccatc 1036
||||||| ||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 221 acgacctgtccaggtgcttctcgagnacgtccttgatgcgcttnnggtccatc 169
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,600,795
Number of Sequences: 438736
Number of extensions: 1600795
Number of successful extensions: 10719
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10405
Number of HSP's gapped (non-prelim): 287
length of query: 1153
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1132
effective length of database: 2,791,206,460
effective search space: 3159645712720
effective search space used: 3159645712720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)