BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU068820.1|AU068820 AU068820 Rice callus Oryza sativa (j... 355 2e-095
dbj|AK059234.1| Oryza sativa (japonica cultivar-group) cDNA... 355 2e-095
gb|AU085982.1|AU085982 AU085982 Rice root Oryza sativa (jap... 307 4e-081
gb|CF340370.1|CF340370 RCL1--07-N05.g1 Regenerated callus l... 307 4e-081
dbj|AK059582.1| Oryza sativa (japonica cultivar-group) cDNA... 307 4e-081
dbj|AK099010.1| Oryza sativa (japonica cultivar-group) cDNA... 307 4e-081
ref|XM_483765.1| Oryza sativa (japonica cultivar-group), mRNA 307 4e-081
ref|XM_507335.2| PREDICTED Oryza sativa (japonica cultivar-... 307 4e-081
ref|XM_507607.1| PREDICTED Oryza sativa (japonica cultivar-... 307 4e-081
gb|AU094960.1|AU094960 AU094960 Rice panicle (between 3cm t... 301 3e-079
dbj|AK068626.1| Oryza sativa (japonica cultivar-group) cDNA... 299 1e-078
gb|D38974.1|D38974 RICR0038A Rice root Oryza sativa (japoni... 297 4e-078
gb|AU094167.1|AU094167 AU094167 Rice panicle at flowering s... 291 3e-076
gb|AU062811.1|AU062811 AU062811 Rice callus Oryza sativa (j... 280 1e-072
gb|AU062822.1|AU062822 AU062822 Rice callus Oryza sativa (j... 274 6e-071
gb|AU064042.1|AU064042 AU064042 Rice panicle at flowering s... 268 4e-069
gb|CF323705.1|CF323705 HDN--04-I23.g1 OsHDAC1-overexpressin... 258 4e-066
gb|AU069688.1|AU069688 AU069688 Rice callus Oryza sativa (j... 244 5e-062
gb|CV731462.1|CV731462 FLO--05-I04.b1 Rice flower lambda ph... 244 5e-062
gb|CV731913.1|CV731913 FLO--06-C15.b1 Rice flower lambda ph... 244 5e-062
gb|CV732474.1|CV732474 FLO--06-P12.b1 Rice flower lambda ph... 244 5e-062
dbj|AK058630.1| Oryza sativa (japonica cultivar-group) cDNA... 244 5e-062
gb|D15113.1|D15113 RICC0083A Rice callus Oryza sativa (japo... 238 3e-060
gb|D22528.1|D22528 RICC0144A Rice callus Oryza sativa (japo... 236 1e-059
gb|C26466.1|C26466 C26466 Rice callus cDNA Oryza sativa (ja... 232 2e-058
gb|AU094959.2|AU094959 AU094959 Rice panicle (between 3cm t... 232 2e-058
gb|CV731316.1|CV731316 FLO--05-E20.b1 Rice flower lambda ph... 228 3e-057
gb|D22958.1|D22958 RICC1868A Rice callus Oryza sativa (japo... 208 3e-051
gb|C27739.1|C27739 C27739 Rice callus cDNA Oryza sativa (ja... 184 4e-044
gb|AU092653.1|AU092653 AU092653 Rice callus Oryza sativa (j... 182 2e-043
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 180 7e-043
dbj|AP005546.3| Oryza sativa (japonica cultivar-group) geno... 180 7e-043
gb|AACV01020564.1| Oryza sativa (japonica cultivar-group) c... 180 7e-043
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 180 7e-043
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 180 7e-043
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 180 7e-043
gb|CV731463.1|CV731463 FLO--05-I04.g1 Rice flower lambda ph... 176 1e-041
gb|CV733158.1|CV733158 FLO--07-P04.g1 Rice flower lambda ph... 165 4e-038
gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) c... 165 4e-038
dbj|AP005524.3| Oryza sativa (japonica cultivar-group) geno... 165 4e-038
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 165 4e-038
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 165 4e-038
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 165 4e-038
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 165 4e-038
ref|NT_107139.1| Oryza sativa (japonica cultivar-group) 157 1e-035
gb|AACV01022359.1| Oryza sativa (japonica cultivar-group) c... 157 1e-035
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 157 1e-035
gb|AC112209.4| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|AC138196.3| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 157 1e-035
gb|D23608.1|D23608 RICC3084A Rice callus Oryza sativa (japo... 149 2e-033
gb|CV731317.1|CV731317 FLO--05-E20.g1 Rice flower lambda ph... 145 4e-032
gb|CV732475.1|CV732475 FLO--06-P12.g1 Rice flower lambda ph... 145 4e-032
gb|AU312176.1|AU312176 AU312176 Oryza sativa anther cDNA Or... 117 8e-024
gb|CF322031.1|CF322031 HD--13-H21.b1 OsHDAC1-overexpressing... 113 1e-022
gb|AU172739.1|AU172739 AU172739 Rice panicle at ripening st... 107 8e-021
gb|CV733157.1|CV733157 FLO--07-P04.b1 Rice flower lambda ph... 96 3e-017
gb|CB680192.1|CB680192 OSJNEf04J12.f OSJNEf Oryza sativa (j... 68 7e-009
gb|CX728338.1|CX728338 OSJNEf04J12.r OSJNEf Oryza sativa (j... 68 7e-009
gb|AACV01010025.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01019821.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromoso... 50 0.002
emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromoso... 50 0.002
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP004756.2| Oryza sativa (japonica cultivar-group) geno... 46 0.026
dbj|AP004011.3| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|AACV01019460.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 46 0.026
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K1... 42 0.40
gb|AC134924.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|AC093953.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
dbj|AP005701.3| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP005724.3| Oryza sativa (japonica cultivar-group) geno... 42 0.40
gb|AC133609.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
ref|NT_107093.1| Oryza sativa (japonica cultivar-group) chr... 42 0.40
gb|AC150788.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|AC144741.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|AACV01005298.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01010958.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01011666.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01012472.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01021743.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01028063.1| Oryza sativa (japonica cultivar-group) C... 42 0.40
gb|AACV01033550.1| Oryza sativa (japonica cultivar-group) C... 42 0.40
ref|NM_196900.1| Oryza sativa (japonica cultivar-group) hyp... 42 0.40
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 42 0.40
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 42 0.40
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromoso... 42 0.40
emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromoso... 42 0.40
emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromoso... 42 0.40
emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromoso... 42 0.40
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
>gb|AU068820.1|AU068820 AU068820 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50674_9A, mRNA sequence
Length = 405
Score = 355 bits (179), Expect = 2e-095
Identities = 290/327 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 48 atggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggt 107
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 108 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 167
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 168 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 227
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| |||| || |||||||||||| ||||||| ||| |||| |||||||
Sbjct: 228 atcaccccctccgtcctctccgagcgcctcaggattaatgggtccctggctaggagggct 287
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
|| ||||||||||||| | |||||| || |||||||| || ||||||| ||||| |||
Sbjct: 288 atgaaggatctgatggatagggggcttatcaggatggtgtcggttcattgcagccaacag 347
Query: 398 atatacaccagggcaaccaacacatga 424
|| |||||||||||||| |||||||||
Sbjct: 348 atttacaccagggcaacgaacacatga 374
>dbj|AK059234.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E11, full
insert sequence
Length = 510
Score = 355 bits (179), Expect = 2e-095
Identities = 290/327 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 62 atggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggt 121
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 122 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 181
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 182 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 241
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| |||| || |||||||||||| ||||||| ||| |||| |||||||
Sbjct: 242 atcaccccctccgtcctctccgagcgcctcaggattaatgggtccctggctaggagggct 301
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
|| ||||||||||||| | |||||| || |||||||| || ||||||| ||||| |||
Sbjct: 302 atgaaggatctgatggatagggggcttatcaggatggtgtcggttcattgcagccaacag 361
Query: 398 atatacaccagggcaaccaacacatga 424
|| |||||||||||||| |||||||||
Sbjct: 362 atttacaccagggcaacgaacacatga 388
>gb|AU085982.1|AU085982 AU085982 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0038, mRNA sequence
Length = 626
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 67 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 126
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 127 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 186
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 246
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 247 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 306
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 307 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 366
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 367 atctacaccagggcaaccaacac 389
>gb|CF340370.1|CF340370 RCL1--07-N05.g1 Regenerated callus lambda phage cDNA library (RCL1)
Oryza sativa (japonica cultivar-group) cDNA clone
RCL1--07-N05, mRNA sequence
Length = 560
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 83 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 142
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 143 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 202
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 262
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 263 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 322
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 323 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 382
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 383 atctacaccagggcaaccaacac 405
>dbj|AK059582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B04, full
insert sequence
Length = 620
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 82 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 141
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 142 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 201
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 261
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 262 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 321
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 322 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 381
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 382 atctacaccagggcaaccaacac 404
>dbj|AK099010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120F23, full
insert sequence
Length = 629
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 93 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 152
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 153 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 212
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 213 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 272
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 273 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 332
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 333 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 392
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 393 atctacaccagggcaaccaacac 415
>ref|XM_483765.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 619
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 83 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 142
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 143 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 202
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 262
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 263 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 322
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 323 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 382
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 383 atctacaccagggcaaccaacac 405
>ref|XM_507335.2| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.14 mRNA
Length = 619
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 83 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 142
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 143 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 202
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 262
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 263 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 322
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 323 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 382
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 383 atctacaccagggcaaccaacac 405
>ref|XM_507607.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.14 mRNA
Length = 620
Score = 307 bits (155), Expect = 4e-081
Identities = 281/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 82 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 141
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 142 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 201
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 202 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 261
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 262 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 321
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 322 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 381
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 382 atctacaccagggcaaccaacac 404
>gb|AU094960.1|AU094960 AU094960 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41238, mRNA sequence
Length = 625
Score = 301 bits (152), Expect = 3e-079
Identities = 280/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| || || ||||||||||||||||| ||
Sbjct: 68 atggccccgaagaaggacaaggccccgccgccgtcntcgaagccggccaagtccggcggt 127
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 128 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 187
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 188 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 247
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 248 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 307
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 308 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 367
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 368 atctacaccagggcaaccaacac 390
>dbj|AK068626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154N05, full
insert sequence
Length = 619
Score = 299 bits (151), Expect = 1e-078
Identities = 280/323 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 83 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 142
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 143 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 202
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 262
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 263 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 322
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | ||||| || ||||| || |||||||||
Sbjct: 323 atcaatgatttaatgacacggggcctaatccgcatggtgtcggttcactcaagccagcag 382
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 383 atctacaccagggcaaccaacac 405
>gb|D38974.1|D38974 RICR0038A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 416
Score = 297 bits (150), Expect = 4e-078
Identities = 279/322 (86%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 67 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 126
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |
Sbjct: 127 ggcaagcagaagaagaagaagtggagcaagggagagcaaaaggagaaggtgaacaactcg 186
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 246
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 247 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 306
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 307 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 366
Query: 398 atatacaccagggcaaccaaca 419
|| |||||||||||||||||||
Sbjct: 367 atctacaccagggcaaccaaca 388
>gb|AU094167.1|AU094167 AU094167 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3524, mRNA sequence
Length = 611
Score = 291 bits (147), Expect = 3e-076
Identities = 280/323 (86%), Gaps = 1/323 (0%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 55 atggccccgaagaaggc-aaggccccgccgccgtcgtcgaagccggccaagtccggcggt 113
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 114 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 173
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 174 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 233
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || |||||| | |||||| | || || ||| |||| || ||||||
Sbjct: 234 atcaccccctccgttctctctgagagactcaggatcaacgggtccctggctcgtagggcc 293
Query: 338 atcaaggatctgatggcaaaggggctcataaggatggtctctgttcattctagccagcag 397
||||| ||| | ||| || ||| || || | |||||||| ||||| || |||||||||
Sbjct: 294 atcaatgatttaatgacacggggcctaatccgcatggtctcggttcactcaagccagcag 353
Query: 398 atatacaccagggcaaccaacac 420
|| ||||||||||||||||||||
Sbjct: 354 atctacaccagggcaaccaacac 376
>gb|AU062811.1|AU062811 AU062811 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50560_1A, mRNA sequence
Length = 310
Score = 280 bits (141), Expect = 1e-072
Identities = 226/256 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||
Sbjct: 47 atggccccgaagaaggacaaggttccgccgccgtcgtccaagcccgccaagtccggcggt 106
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 107 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 166
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 167 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 226
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| |||| || ||||| |||||| ||||||| ||| ||| |||||||
Sbjct: 227 atcaccccntccntcctctccgagcgnctcaggattaatgggtccctggntaggagggct 286
Query: 338 atcaaggatctgatgg 353
|| |||| ||||||||
Sbjct: 287 atgaaggntctgatgg 302
>gb|AU062822.1|AU062822 AU062822 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50644_1A, mRNA sequence
Length = 346
Score = 274 bits (138), Expect = 6e-071
Identities = 213/239 (89%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||
Sbjct: 48 atggccccgaagaaggacaaggnnccgccgccgtcgtccaagcccgccaagtccggcggt 107
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 108 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 167
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 168 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 227
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggc 336
|||||||| ||| | || || |||||||||||| ||||||| ||| |||| |||||||
Sbjct: 228 atcaccccctccgtnctctccgagcgcctcaggattaatgggtccctggctaggagggc 286
>gb|AU064042.1|AU064042 AU064042 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3524_1A, mRNA sequence
Length = 336
Score = 268 bits (135), Expect = 4e-069
Identities = 217/245 (88%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 67 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 126
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 127 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 186
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 gtgctgttcgaccaggccacctacgacaagctgctctccgaggtgcccaagtacaagcag 246
Query: 278 atcaccccatccatcctatctgagcgcctcagggttaatggatccttggcacggagggcc 337
|||||||| ||| | || ||| || | |||||| | || || ||| |||| || ||||||
Sbjct: 247 atcaccccctccnttctctctnagagactcaggatcaacgggtccctggctcgtagggcc 306
Query: 338 atcaa 342
|||||
Sbjct: 307 atcaa 311
>gb|CF323705.1|CF323705 HDN--04-I23.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-I23, mRNA sequence
Length = 498
Score = 258 bits (130), Expect = 4e-066
Identities = 250/290 (86%)
Strand = Plus / Plus
Query: 131 tcgtccaagccggccaagtccggaggcgggaagcagaagaagaagaagtggagcaagggt 190
||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 13 tcgtcgaagccggccaagtccggcggtggcaagcagaagaagaagaagtggagcaaggga 72
Query: 191 aagcagaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacgataagctg 250
||||| ||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||||
Sbjct: 73 aagcaaaaggagaaggtgaacaactcggtgctgttcgaccaggccacctacgacaagctg 132
Query: 251 ctctccgaggtgcccaagtacaagcagatcaccccatccatcctatctgagcgcctcagg 310
||||||||||||||||||||||||||||||||||| ||| | || |||||| | ||||||
Sbjct: 133 ctctccgaggtgcccaagtacaagcagatcaccccctccgttctctctgagagactcagg 192
Query: 311 gttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagg 370
| || || ||| |||| || ||||||||||| ||| | ||| || ||| || || |
Sbjct: 193 atcaacgggtccctggctcgtagggccatcaatgatttaatgacacggggcctaatccgc 252
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 253 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 302
>gb|AU069688.1|AU069688 AU069688 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2030_21A, mRNA sequence
Length = 249
Score = 244 bits (123), Expect = 5e-062
Identities = 171/188 (90%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||| |
Sbjct: 60 atggccccgaagaaggacaaggccccgncgccgtcgtcgaagccggccaagtccggcgnt 119
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
Sbjct: 120 ggcaagcagaagaagaagaagtggagcaagggaaagcaaaaggagaaggtgaacaactcg 179
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcag 277
||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 180 gtgctgttcgaccaggccacctacgacaagctgctctncgaggtgcccaagtacaagcag 239
Query: 278 atcacccc 285
||||||||
Sbjct: 240 atcacccc 247
>gb|CV731462.1|CV731462 FLO--05-I04.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-I04,
mRNA sequence
Length = 353
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 75 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 134
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 135 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 194
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 195 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 254
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 255 agatcaccccctccgtcct 273
>gb|CV731913.1|CV731913 FLO--06-C15.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C15,
mRNA sequence
Length = 540
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 130 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 189
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 190 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 249
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 250 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 309
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 310 agatcaccccctccgtcct 328
>gb|CV732474.1|CV732474 FLO--06-P12.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-P12,
mRNA sequence
Length = 557
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 142 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 201
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 202 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 261
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 262 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 321
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 322 agatcaccccctccgtcct 340
>dbj|AK058630.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C09, full
insert sequence
Length = 604
Score = 244 bits (123), Expect = 5e-062
Identities = 180/199 (90%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 78 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 137
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 138 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 197
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 198 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 257
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 258 agatcaccccctccgtcct 276
>gb|D15113.1|D15113 RICC0083A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0083A, mRNA sequence
Length = 335
Score = 238 bits (120), Expect = 3e-060
Identities = 179/199 (89%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 18 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 77
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 78 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 137
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 138 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 197
Query: 276 agatcaccccatccatcct 294
|||||| ||| ||| ||||
Sbjct: 198 agatcancccctccgtcct 216
>gb|D22528.1|D22528 RICC0144A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0144_2A, mRNA sequence
Length = 409
Score = 236 bits (119), Expect = 1e-059
Identities = 179/199 (89%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||| ||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 66 ccatggcgccgaagatggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 125
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 126 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 185
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 186 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 245
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 246 agatcaccccctccgtcct 264
>gb|C26466.1|C26466 C26466 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12376_1A, mRNA sequence
Length = 377
Score = 232 bits (117), Expect = 2e-058
Identities = 178/199 (89%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||| ||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 32 ccatggcgccgaagagggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 91
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 92 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 151
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 152 cggtgctgttcgacaaggccacctacgacaagcttctntccgaggtgcccaagtacaagc 211
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 212 agatcaccccctccntcct 230
>gb|AU094959.2|AU094959 AU094959 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41238, mRNA sequence
Length = 268
Score = 232 bits (117), Expect = 2e-058
Identities = 172/189 (91%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 98 atggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggc 157
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 67 atggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggt 126
Query: 158 gggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgct 217
|| |||||||||||||||||||||||| |||| ||||| ||||||||||| |||||| |
Sbjct: 127 ggcaagcagaagaagaagaagtggagctagggaaagcaaaaggagaaggtgaacaactcg 186
Query: 218 gtgctcttcgatcaggccacctacgataagctgctctccgagg-tgcccaagtacaagca 276
||||| ||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct: 187 gtgctgttcgaccaggccaactacgacaagctgctctccgaggttgcccaagtacaagca 246
Query: 277 gatcacccc 285
|||||||||
Sbjct: 247 gatcacccc 255
>gb|CV731316.1|CV731316 FLO--05-E20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-E20,
mRNA sequence
Length = 490
Score = 228 bits (115), Expect = 3e-057
Identities = 178/199 (89%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct: 80 ccatggcgccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcg 139
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || | |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 140 gaggcattcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 199
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 200 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 259
Query: 276 agatcaccccatccatcct 294
|||||||||| ||| ||||
Sbjct: 260 agatcaccccctccgtcct 278
>gb|D22958.1|D22958 RICC1868A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1868_1A, mRNA sequence
Length = 361
Score = 208 bits (105), Expect = 3e-051
Identities = 167/189 (88%)
Strand = Plus / Plus
Query: 96 ccatggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggag 155
||||||| ||||||||||| |||||||||| ||| | || | | ||||||| ||||| |
Sbjct: 69 ccatggcgccgaagaaggacaaggccccgcngccgtnctcgaggncggccaantccggcg 128
Query: 156 gcgggaagcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacg 215
| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 129 gaggcaagcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaact 188
Query: 216 ctgtgctcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagc 275
| ||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 189 cggtgctgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagc 248
Query: 276 agatcaccc 284
|||||||||
Sbjct: 249 agatcaccc 257
>gb|C27739.1|C27739 C27739 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52740_2A, mRNA sequence
Length = 398
Score = 184 bits (93), Expect = 4e-044
Identities = 202/239 (84%)
Strand = Plus / Plus
Query: 182 agcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctac 241
|||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||||||||||
Sbjct: 1 agcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccaggccacctac 60
Query: 242 gataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcctatctgag 301
|| ||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct: 61 gacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccnttctctctgag 120
Query: 302 cgcctcagggttaatggatccttggcacggagggccatcaaggatctgatggcaaagggg 361
| |||||| | || || ||| |||| || ||||||||||| ||| | || || |||
Sbjct: 121 agactcaggatcaacgggtccctggctcgtagggccatcaatgatttantgacacggggc 180
Query: 362 ctcataaggatggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|| || | |||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 181 ctaatccgcatggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 239
>gb|AU092653.1|AU092653 AU092653 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52740, mRNA sequence
Length = 486
Score = 182 bits (92), Expect = 2e-043
Identities = 201/238 (84%)
Strand = Plus / Plus
Query: 183 gcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcaggccacctacg 242
||||||| ||||| ||||||||||| |||||| | ||||| ||||| |||||||||||||
Sbjct: 1 gcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccaggccacctacg 60
Query: 243 ataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcctatctgagc 302
| ||||||||||||||||||||||||||||||||||||||||| ||| | || |||||
Sbjct: 61 acaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttctctctgana 120
Query: 303 gcctcagggttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggc 362
| |||||| | || || ||| |||| || ||||||||||| ||| | ||| || ||| |
Sbjct: 121 gactcaggatcaacgggtccctggctcgtagggccatcaatgatttaatgacacggggcc 180
Query: 363 tcataaggatggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
| || | |||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 181 taatccgcatggtctcggttcactcaagccagcagatntacaccagggcaaccaacac 238
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 532117 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 532058
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 532057 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 531998
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 531997 tctccgagcgcctcagggt 531979
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 532283 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 532224
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 532223 caagcagaagaagaag 532208
Score = 81.8 bits (41), Expect = 5e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 531363 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 531304
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacacatga 424
|||| || ||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 531303 tggtgtcggttcattgcagccaacagatttacaccagggcaacgaacacatga 531251
>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1003_C09
Length = 124746
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 37889 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 37830
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 37829 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 37770
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 37769 tctccgagcgcctcagggt 37751
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 38055 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 37996
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 37995 caagcagaagaagaag 37980
Score = 81.8 bits (41), Expect = 5e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 37135 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 37076
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacacatga 424
|||| || ||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 37075 tggtgtcggttcattgcagccaacagatttacaccagggcaacgaacacatga 37023
>gb|AACV01020564.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020564, whole
genome shotgun sequence
Length = 32136
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 17589 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 17648
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 17649 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 17708
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 17709 tctccgagcgcctcagggt 17727
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 17423 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 17482
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 17483 caagcagaagaagaag 17498
Score = 56.0 bits (28), Expect = 3e-005
Identities = 86/104 (82%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 18343 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 18402
Query: 372 tggtctctgttcattctagccagcagatat-acaccagggcaac 414
|||| || ||||||| ||||| ||||| | |||||||||||||
Sbjct: 18403 tggtgtcggttcattgcagccaacagatttaacaccagggcaac 18446
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 11830785 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 11830726
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 11830725 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 11830666
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 11830665 tctccgagcgcctcagggt 11830647
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 11830951 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 11830892
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 11830891 caagcagaagaagaag 11830876
Score = 56.0 bits (28), Expect = 3e-005
Identities = 86/104 (82%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 11830031 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 11829972
Query: 372 tggtctctgttcattctagccagcagatat-acaccagggcaac 414
|||| || ||||||| ||||| ||||| | |||||||||||||
Sbjct: 11829971 tggtgtcggttcattgcagccaacagatttaacaccagggcaac 11829928
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 34 ccggggcccgccgccgccgcttccgctcc 62
||||||||||||||||||||| |||||||
Sbjct: 2036225 ccggggcccgccgccgccgctcccgctcc 2036253
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 21304596 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 21304537
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 21304536 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 21304477
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 21304476 tctccgagcgcctcagggt 21304458
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 21304762 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 21304703
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 21304702 caagcagaagaagaag 21304687
Score = 56.0 bits (28), Expect = 3e-005
Identities = 86/104 (82%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 21303842 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 21303783
Query: 372 tggtctctgttcattctagccagcagatat-acaccagggcaac 414
|||| || ||||||| ||||| ||||| | |||||||||||||
Sbjct: 21303782 tggtgtcggttcattgcagccaacagatttaacaccagggcaac 21303739
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 34 ccggggcccgccgccgccgcttccgctcc 62
||||||||||||||||||||| |||||||
Sbjct: 11510036 ccggggcccgccgccgccgctcccgctcc 11510064
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 gcccgccgccgccgcttccgctc 61
|||||||||||||||||||||||
Sbjct: 6208334 gcccgccgccgccgcttccgctc 6208312
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 180 bits (91), Expect = 7e-043
Identities = 127/139 (91%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 22401400 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 22401341
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 22401340 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 22401281
Query: 294 tatctgagcgcctcagggt 312
| || ||||||||||||||
Sbjct: 22401280 tctccgagcgcctcagggt 22401262
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 22401566 ggccccgaagaaggacaaggccccgccgccgtcgtccaagcccgccaagtccggcggtgg 22401507
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 22401506 caagcagaagaagaag 22401491
Score = 81.8 bits (41), Expect = 5e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 312 ttaatggatccttggcacggagggccatcaaggatctgatggcaaaggggctcataagga 371
||||||| ||| |||| ||||||| || ||||||||||||| | |||||| || ||||
Sbjct: 22400646 ttaatgggtccctggctaggagggctatgaaggatctgatggatagggggcttatcagga 22400587
Query: 372 tggtctctgttcattctagccagcagatatacaccagggcaaccaacacatga 424
|||| || ||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 22400586 tggtgtcggttcattgcagccaacagatttacaccagggcaacgaacacatga 22400534
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 gcccgccgccgccgcttccgctc 61
|||||||||||||||||||||||
Sbjct: 7178539 gcccgccgccgccgcttccgctc 7178517
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 cccgccgccgccgcttccgct 60
|||||||||||||||||||||
Sbjct: 9944529 cccgccgccgccgcttccgct 9944549
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 cccgccgccgccgcttccgct 60
|||||||||||||||||||||
Sbjct: 9935143 cccgccgccgccgcttccgct 9935163
>gb|CV731463.1|CV731463 FLO--05-I04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-I04,
mRNA sequence
Length = 534
Score = 176 bits (89), Expect = 1e-041
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 162 agcagaagaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgc 221
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||
Sbjct: 534 agcagaagaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgc 475
Query: 222 tcttcgatcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagatca 281
| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 474 tgttcgacaaggccacctacgacaagcttctctccgaggtgcccaagtacaagcagatca 415
Query: 282 ccccatccatcct 294
|||| ||| ||||
Sbjct: 414 ccccctccgtcct 402
>gb|CV733158.1|CV733158 FLO--07-P04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--07-P04,
mRNA sequence
Length = 494
Score = 165 bits (83), Expect = 4e-038
Identities = 116/127 (91%)
Strand = Plus / Minus
Query: 168 agaagaagaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcg 227
|||||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||
Sbjct: 494 agaagaagaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcg 435
Query: 228 atcaggccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccat 287
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 434 acaaggccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccct 375
Query: 288 ccatcct 294
|| ||||
Sbjct: 374 ccgtcct 368
>gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018982, whole
genome shotgun sequence
Length = 54373
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 7053 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 6994
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 6993 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 6934
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 6933 tctctgagagactcagggt 6915
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Minus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 7213 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 7154
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 7153 caagcagaagaagaag 7138
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 6024 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 5975
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0562A06
Length = 154198
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 43603 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 43662
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 43663 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 43722
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 43723 tctctgagagactcagggt 43741
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 43443 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 43502
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 43503 caagcagaagaagaag 43518
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 44632 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 44681
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 27728024 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 27728083
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 27728084 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 27728143
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 27728144 tctctgagagactcagggt 27728162
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 27727864 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 27727923
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 27727924 caagcagaagaagaag 27727939
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 27729053 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 27729102
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 19076197 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 19076256
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 19076257 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 19076316
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 19076317 tctctgagagactcagggt 19076335
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 19076037 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 19076096
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 19076097 caagcagaagaagaag 19076112
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 19077226 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 19077275
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 26678203 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 26678262
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 26678263 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 26678322
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 26678323 tctctgagagactcagggt 26678341
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 26678043 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 26678102
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 26678103 caagcagaagaagaag 26678118
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 26679232 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 26679281
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 165 bits (83), Expect = 4e-038
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||| ||||
Sbjct: 27966111 agaagtggagcaagggaaagcaaaaggagaaggtgaacaactcggtgctgttcgaccagg 27966170
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 27966171 ccacctacgacaagctgctctccgaggtgcccaagtacaagcagatcaccccctccgttc 27966230
Query: 294 tatctgagcgcctcagggt 312
| |||||| | ||||||||
Sbjct: 27966231 tctctgagagactcagggt 27966249
Score = 103 bits (52), Expect = 1e-019
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 100 ggccccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgg 159
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 27965951 ggccccgaagaaggacaaggccccgccgccgtcgtcgaagccggccaagtccggcggtgg 27966010
Query: 160 gaagcagaagaagaag 175
|||||||||||||||
Sbjct: 27966011 caagcagaagaagaag 27966026
Score = 67.9 bits (34), Expect = 7e-009
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 371 atggtctctgttcattctagccagcagatatacaccagggcaaccaacac 420
|||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 27967140 atggtctcggttcactcaagccagcagatctacaccagggcaaccaacac 27967189
>ref|NT_107139.1| Oryza sativa (japonica cultivar-group)
Length = 380899
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 6434 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 6493
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 6494 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 6553
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 6554 tctccgagaggctcagggt 6572
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 6257 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 6316
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 6317 cagaagaagaag 6328
>gb|AACV01022359.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022359, whole
genome shotgun sequence
Length = 52987
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 41373 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 41314
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 41313 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 41254
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 41253 tctccgagaggctcagggt 41235
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 41550 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 41491
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 41490 cagaagaagaag 41479
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 2345086 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 2345145
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 2345146 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 2345205
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 2345206 tctccgagaggctcagggt 2345224
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 2344909 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 2344968
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 2344969 cagaagaagaag 2344980
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 2647378 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 2647437
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 2647438 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 2647497
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 2647498 tctccgagaggctcagggt 2647516
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 2647201 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 2647260
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 2647261 cagaagaagaag 2647272
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 2505360 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 2505419
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 2505420 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 2505479
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 2505480 tctccgagaggctcagggt 2505498
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 2505183 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 2505242
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 2505243 cagaagaagaag 2505254
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 cccgccgccgccgcttccgct 60
|||||||||||||||||||||
Sbjct: 26210686 cccgccgccgccgcttccgct 26210706
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 cccgccgccgccgcttccgct 60
|||||||||||||||||||||
Sbjct: 26190051 cccgccgccgccgcttccgct 26190071
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09
map C83B, complete sequence
Length = 123477
Score = 157 bits (79), Expect = 1e-035
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 174 agaagtggagcaagggtaagcagaaggagaaggtcaacaacgctgtgctcttcgatcagg 233
|||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||
Sbjct: 117044 agaagtggagcaaggggaagcagaaggagaaggtgaacaactcggtgctgttcgacaagg 116985
Query: 234 ccacctacgataagctgctctccgaggtgcccaagtacaagcagatcaccccatccatcc 293
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 116984 ccacctacgacaagcttctctccgaggtgcccaagtacaagcagatcaccccctccgtcc 116925
Query: 294 tatctgagcgcctcagggt 312
| || ||| | ||||||||
Sbjct: 116924 tctccgagaggctcagggt 116906
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 104 ccgaagaaggagaaggccccgccgccatcgtccaagccggccaagtccggaggcgggaag 163
||||||||||| |||||||||||||| || || ||||||||||||||||| || || |||
Sbjct: 117221 ccgaagaaggacaaggccccgccgccgtcctcgaagccggccaagtccggcggaggcaag 117162
Query: 164 cagaagaagaag 175
||||||||||||
Sbjct: 117161 cagaagaagaag 117150
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,159,559
Number of Sequences: 438736
Number of extensions: 2159559
Number of successful extensions: 53318
Number of sequences better than 0.5: 113
Number of HSP's better than 0.5 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49269
Number of HSP's gapped (non-prelim): 4046
length of query: 713
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 692
effective length of database: 2,791,206,460
effective search space: 1931514870320
effective search space used: 1931514870320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)