BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.6
(1100 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0... 58 1e-005
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AC138195.2| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
dbj|AP005501.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP004560.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) c... 48 0.010
dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.040
gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) c... 46 0.040
gb|AC112208.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.040
gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K1... 44 0.16
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 44 0.16
dbj|AP005475.4| Oryza sativa (japonica cultivar-group) geno... 44 0.16
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.16
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.16
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.16
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
insert sequence
Length = 1300
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 850 gacatgttcagttacattccacctgctcaagctgtcctgct 890
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 16514 gacatgttcagttacattccacctgctcaagctgtcctgct 16474
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 5051 gggctggacgagtggttcaggaaggac 5077
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 672543 gacatgttcagttacattccacctgctcaagctgtcctgct 672583
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 739662 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 739615
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 684006 gggctggacgagtggttcaggaaggac 683980
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 544384 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 544334
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 520745 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 520695
>gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022917, whole
genome shotgun sequence
Length = 4741
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 3101 gacatgttcagttacattccacctgctcaagctgtcctgct 3061
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 2632876 gacatgttcagttacattccacctgctcaagctgtcctgct 2632916
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 2704010 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 2703963
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 2508928 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 2508878
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 2488523 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 2488473
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 10487920 gacatgttcagttacattccacctgctcaagctgtcctgct 10487960
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 10559054 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 10559007
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 10363972 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 10363922
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 10343567 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 10343517
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 11483023 gacatgttcagttacattccacctgctcaagctgtcctgct 11483063
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 11550142 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 11550095
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 11494486 gggctggacgagtggttcaggaaggac 11494460
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 11354864 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 11354814
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 11331225 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 11331175
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
complete sequence
Length = 147381
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 130765 gacatgttcagttacattccacctgctcaagctgtcctgct 130725
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 63646 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 63693
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 119302 gggctggacgagtggttcaggaaggac 119328
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 461 gacatgttcagtttcattccacctgctcaaactgtcgtgct 501
||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 11562212 gacatgttcagttacattccacctgctcaagctgtcctgct 11562252
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 11629331 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 11629284
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 11573675 gggctggacgagtggttcaggaaggac 11573649
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 11434053 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 11434003
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 11410414 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 11410364
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
insert sequence
Length = 1262
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 458 ggtgacatgttcagtttcattccacctgctcaaactgtcgtgctaaagcttgtgctgcac 517
|||||||||||| | ||| |||||||||||| ||||| |||| ||||||||||| |||
Sbjct: 827 ggtgacatgttccgcgccatcccacctgctcaagctgtcatgctcaagcttgtgcttcac 886
Query: 518 cac 520
|||
Sbjct: 887 cac 889
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 522 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 572
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0458D06
Length = 166038
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 40686 agggccattgtcaaggccttcccacacat 40714
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0462E11
Length = 166115
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 134870 agggccattgtcaaggccttcccacacat 134898
>gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017371, whole
genome shotgun sequence
Length = 79719
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 11528 agggccattgtcaaggccttcccacacat 11556
>ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1116
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 673 agggccattgtcaaggccttcccacacat 701
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 3815099 agggccattgtcaaggccttcccacacat 3815127
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 3937540 agggccattgtcaaggccttcccacacat 3937568
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 3937540 agggccattgtcaaggccttcccacacat 3937568
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 353 agggccattgccaaggccttcccacacat 381
|||||||||| ||||||||||||||||||
Sbjct: 4047573 agggccattgtcaaggccttcccacacat 4047601
>gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022921, whole
genome shotgun sequence
Length = 6663
Score = 48.1 bits (24), Expect = 0.010
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagca 191
|||| ||||||||||| |||||||| |||| |||||| |||||||||
Sbjct: 6551 cgtcgccgttcgaggacctgcacggcgcgaggctgttcgacgagagca 6504
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
insert sequence
Length = 1264
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 467 gggctggacgagtggttcaggaaggac 493
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
insert sequence
Length = 1362
Score = 46.1 bits (23), Expect = 0.040
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 110 gggctggccgagtggttcaggaaggac 136
||||||| |||||||||||||||||||
Sbjct: 462 gggctggacgagtggttcaggaaggac 488
>gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022905, whole
genome shotgun sequence
Length = 10752
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 6070 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 6020
>gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022906, whole
genome shotgun sequence
Length = 51114
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 15673 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 15623
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| || | |||||| ||||||||||||
Sbjct: 141222 cgtcgccgttcgaggaggtgcacggcgccgcgctgttcgacgagagcatgg 141172
Score = 46.1 bits (23), Expect = 0.040
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 144 cgtcaccgttcgaggagctgcacggggcgactctgttccacgagagcatgg 194
|||| |||||||||||| ||||||| ||| |||||| ||||||||||||
Sbjct: 117583 cgtcgccgttcgaggaggtgcacggcgcggtgctgttcgacgagagcatgg 117533
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
sequence
Length = 144724
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 70677 atatatatatacatatatatgtatgcatat 70648
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 3854090 atatatatatacatatatatgtatgcatat 3854119
>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0091L05
Length = 173983
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 95659 atatatatatacatatatatgtatgcatat 95688
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 10328734 atatatatatacatatatatgtatgcatat 10328763
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 10384479 atatatatatacatatatatgtatgcatat 10384508
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 17121659 atatatatatacatatatatgtatgcatat 17121688
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 44.1 bits (22), Expect = 0.16
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 801 atatatatttacatacatatgtatgcatat 830
|||||||| |||||| ||||||||||||||
Sbjct: 17130699 atatatatatacatatatatgtatgcatat 17130728
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,553,235
Number of Sequences: 438736
Number of extensions: 1553235
Number of successful extensions: 10782
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10399
Number of HSP's gapped (non-prelim): 383
length of query: 1100
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1079
effective length of database: 2,791,206,460
effective search space: 3011711770340
effective search space used: 3011711770340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)