BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA... 58 1e-005
gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0... 58 1e-005
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AC138195.2| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA... 54 2e-004
gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) c... 54 2e-004
gb|AC112208.3| Oryza sativa (japonica cultivar-group) chrom... 54 2e-004
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 52 0.001
dbj|AP005192.3| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP005610.3| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 52 0.001
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 52 0.001
dbj|AP007204.2| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 50 0.004
dbj|AP005501.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
dbj|AP004560.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
dbj|AP006554.2| Oryza sativa (japonica cultivar-group) geno... 50 0.004
ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 50 0.004
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 50 0.004
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 50 0.004
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.014
gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) c... 48 0.014
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 46 0.056
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 46 0.056
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 46 0.056
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 46 0.056
emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC O... 46 0.056
emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC O... 46 0.056
emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC O... 46 0.056
gb|AC107225.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|AC145349.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
dbj|AP004662.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP005541.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|AC123526.2| Oryza sativa japonica cultivar-group chromos... 46 0.056
emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC O... 46 0.056
gb|AC144700.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
dbj|AP004770.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP004771.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|AC138608.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC O... 46 0.056
emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC O... 46 0.056
dbj|AP005187.5| Oryza sativa (japonica cultivar-group) geno... 46 0.056
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107133.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107157.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 46 0.056
gb|AC120987.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP006056.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|AC136218.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|AC137004.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
dbj|AP003046.2| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP003233.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP003682.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|AACV01006927.1| Oryza sativa (japonica cultivar-group) c... 46 0.056
gb|AACV01017387.1| Oryza sativa (japonica cultivar-group) c... 46 0.056
gb|AACV01018624.1| Oryza sativa (japonica cultivar-group) c... 46 0.056
gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) c... 46 0.056
dbj|AP006584.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 46 0.056
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107213.1| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 46 0.056
dbj|AP003563.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP004222.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP003825.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP005164.3| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP005528.2| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP005452.5| Oryza sativa (japonica cultivar-group) geno... 46 0.056
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 46 0.056
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 46 0.056
dbj|AP003279.2| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP002883.2| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromoso... 46 0.056
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.056
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.056
gb|AQ871312.1|AQ871312 nbeb0042J18r CUGI Rice BAC Library (... 44 0.22
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.22
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 44 0.22
dbj|AP003566.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
emb|BX569688.1|CNS09SBN Oryza sativa (japonica cultivar-gro... 44 0.22
dbj|AP004273.2| Oryza sativa (japonica cultivar-group) geno... 44 0.22
emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC O... 44 0.22
emb|AL831795.4|CNS08CA8 Oryza sativa chromosome 12, . BAC O... 44 0.22
dbj|AP005464.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP005628.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|AC027659.1| Oryza sativa (japonica cultivar-group) BAC n... 44 0.22
gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, N... 44 0.22
gb|AC144559.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|AC109644.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 ... 44 0.22
gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 ... 44 0.22
gb|AC137751.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|AC134923.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
dbj|AP005657.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 44 0.22
dbj|AP005171.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003754.5| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003803.5| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP005683.2| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP004562.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|AC136998.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
ref|NT_079833.2| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107131.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107136.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 44 0.22
gb|AC145477.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
dbj|AP005707.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|AC151106.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP004007.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP005748.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|AACV01013355.1| Oryza sativa (japonica cultivar-group) c... 44 0.22
gb|AACV01021526.1| Oryza sativa (japonica cultivar-group) c... 44 0.22
gb|AACV01022672.1| Oryza sativa (japonica cultivar-group) c... 44 0.22
ref|NT_080065.1| Oryza sativa (japonica cultivar-group) chr... 44 0.22
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 44 0.22
ref|NT_079864.2| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107185.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.22
ref|NT_107226.1| Oryza sativa (japonica cultivar-group) 44 0.22
dbj|AP001366.1| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003210.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP004669.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003201.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003442.2| Oryza sativa (japonica cultivar-group) geno... 44 0.22
dbj|AP003448.3| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC... 44 0.22
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 44 0.22
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
gb|AC147811.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.22
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
insert sequence
Length = 1300
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 890 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 850
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 16474 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 16514
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 672583 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 672543
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 520687 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 520745
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 739615 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 739662
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 520762 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 520805
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 739041 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 739100
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 739101 tcatcgtcgctcaagtgatgcagaacaagct 739131
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 544334 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 544384
Score = 46.1 bits (23), Expect = 0.056
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1211 agccgcagcaggcggcggaggaacggcagcttagcggaggggagagacagcgccgtgac 1269
||||||| |||||||||||||| || ||||| || | |||||| |||||||| |||||
Sbjct: 492371 agccgcatgaggcggcggaggaaggggagcttggccgtggggagggacagcgcggtgac 492429
>gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022917, whole
genome shotgun sequence
Length = 4741
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 3061 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 3101
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 2632916 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 2632876
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 2488465 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 2488523
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 2703963 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 2704010
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 2488540 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 2488583
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 2703389 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 2703448
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 2703449 tcatcgtcgctcaagtgatgcagaacaagct 2703479
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 2508878 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 2508928
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 10487960 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 10487920
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 10343509 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 10343567
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 10559007 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 10559054
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 10343584 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 10343627
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 10558433 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 10558492
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 10558493 tcatcgtcgctcaagtgatgcagaacaagct 10558523
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 10363922 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 10363972
Score = 44.1 bits (22), Expect = 0.22
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1354 cgtgaggtaggagaggctgagccgccatatgtcggcttgtgc 1395
|||||||||||||| |||| | ||||||| |||||| |||||
Sbjct: 6713624 cgtgaggtaggagaagctgtggcgccataggtcggcctgtgc 6713665
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 11483063 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 11483023
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 11331167 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 11331225
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 11550095 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 11550142
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 11331242 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 11331285
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 24389371 atatatgtatgtatatatatatgtata 24389345
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 21853872 atatatgtatgtatatatatatgtata 21853846
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 11549521 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 11549580
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 11549581 tcatcgtcgctcaagtgatgcagaacaagct 11549611
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 11354814 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 11354864
Score = 46.1 bits (23), Expect = 0.056
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1211 agccgcagcaggcggcggaggaacggcagcttagcggaggggagagacagcgccgtgac 1269
||||||| |||||||||||||| || ||||| || | |||||| |||||||| |||||
Sbjct: 11302851 agccgcatgaggcggcggaggaaggggagcttggccgtggggagggacagcgcggtgac 11302909
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
|||||||||||||| || |||||||||||||
Sbjct: 2072986 atacatatatgtatatatatatatatgtata 2073016
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 26600165 atatatgtatgtatatatatatgtat 26600190
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 25053434 atatatgtatgtatatatatatgtat 25053409
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 24389403 atatatgtatgtatatatatatgtat 24389378
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 24389387 atatatgtatgtatatatatatgtat 24389362
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 21854096 atatatgtatgtatatatatatgtat 21854071
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 20353471 atatatgtatgtatatatatatgtat 20353496
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 20353435 atatatgtatgtatatatatatgtat 20353460
Score = 44.1 bits (22), Expect = 0.22
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1354 cgtgaggtaggagaggctgagccgccatatgtcggcttgtgc 1395
|||||||||||||| |||| | ||||||| |||||| |||||
Sbjct: 7138948 cgtgaggtaggagaagctgtggcgccataggtcggcctgtgc 7138989
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
complete sequence
Length = 147381
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 130725 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 130765
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 63693 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 63646
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 64267 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 64208
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 64207 tcatcgtcgctcaagtgatgcagaacaagct 64177
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 647 agcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||| ||||| |||||||||||||||| |||||||||||||
Sbjct: 11562252 agcaggacagcttgagcaggtggaatgtaactgaacatgtc 11562212
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 11410356 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 11410414
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 11629284 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 11629331
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 11410431 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 11410474
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 24701040 atatatgtatgtatatatatatgtata 24701014
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 22164071 atatatgtatgtatatatatatgtata 22164045
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 11628710 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 11628769
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 11628770 tcatcgtcgctcaagtgatgcagaacaagct 11628800
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 11434003 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 11434053
Score = 46.1 bits (23), Expect = 0.056
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1211 agccgcagcaggcggcggaggaacggcagcttagcggaggggagagacagcgccgtgac 1269
||||||| |||||||||||||| || ||||| || | |||||| |||||||| |||||
Sbjct: 11382040 agccgcatgaggcggcggaggaaggggagcttggccgtggggagggacagcgcggtgac 11382098
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
|||||||||||||| || |||||||||||||
Sbjct: 2080767 atacatatatgtatatatatatatatgtata 2080797
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 26925429 atatatgtatgtatatatatatgtat 26925454
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 25365024 atatatgtatgtatatatatatgtat 25364999
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 24701072 atatatgtatgtatatatatatgtat 24701047
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 24701056 atatatgtatgtatatatatatgtat 24701031
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 22164295 atatatgtatgtatatatatatgtat 22164270
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 20663705 atatatgtatgtatatatatatgtat 20663730
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 20663669 atatatgtatgtatatatatatgtat 20663694
Score = 44.1 bits (22), Expect = 0.22
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1354 cgtgaggtaggagaggctgagccgccatatgtcggcttgtgc 1395
|||||||||||||| |||| | ||||||| |||||| |||||
Sbjct: 7204919 cgtgaggtaggagaagctgtggcgccataggtcggcctgtgc 7204960
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
insert sequence
Length = 1262
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 628 gtggtgcagcacaagctttagcacgacagtttgagcaggtggaatgaaactgaacatgtc 687
|||||| ||||||||||| |||| ||||| |||||||||||| ||| | |||||||||
Sbjct: 889 gtggtgaagcacaagcttgagcatgacagcttgagcaggtgggatggcgcggaacatgtc 830
Query: 688 acc 690
|||
Sbjct: 829 acc 827
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 580 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 522
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 505 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 462
>gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022905, whole
genome shotgun sequence
Length = 10752
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 6012 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 6070
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 6087 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 6130
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 54.0 bits (27), Expect = 2e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 946 gaggctccccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||| |||||||||||| |||||| ||| ||||||| |||||||||||| ||||
Sbjct: 117525 gaggctcgccatgctctcgtcgaacagcaccgcgccgtgcacctcctcgaacggcgacg 117583
Score = 48.1 bits (24), Expect = 0.014
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1009 cacgtccctcttgaaccactccgccagccctatccccgcctcga 1052
||||||| || ||||||||||||| ||||| ||| |||||||||
Sbjct: 117600 cacgtccttcctgaaccactccgcgagccccatcgccgcctcga 117643
Score = 46.1 bits (23), Expect = 0.056
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 954 ccatgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
|||||||||||| |||||| | || ||||||| |||||||||||| ||||
Sbjct: 141172 ccatgctctcgtcgaacagcgcggcgccgtgcacctcctcgaacggcgacg 141222
Score = 46.1 bits (23), Expect = 0.056
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1211 agccgcagcaggcggcggaggaacggcagcttagcggaggggagagacagcgccgtgac 1269
||||||| |||||||||||||| || ||||| || | |||||| |||||||| |||||
Sbjct: 89209 agccgcatgaggcggcggaggaaggggagcttggccgtggggagggacagcgcggtgac 89267
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
|||||||||| |||||||||| || |||||||||||||
Sbjct: 4971682 cacacacatatatatatgtatatatatatatatgtata 4971645
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 2196305 atatatgtatgtatatatatatgtata 2196331
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 2196289 atatatgtatgtatatatatatgtat 2196314
>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0485A07
Length = 166397
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
|||||||||| |||||||||| || |||||||||||||
Sbjct: 125266 cacacacatatatatatgtatatatatatatatgtata 125229
>dbj|AP005610.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0032M14
Length = 146636
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
|||||||||| |||||||||| || |||||||||||||
Sbjct: 75755 cacacacatatatatatgtatatatatatatatgtata 75718
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtat 333
||||||||||||||||| ||||||||||||
Sbjct: 11529382 atacatatatgtatgtatatatatatgtat 11529411
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 36777506 atatatgtatgtatatatatatgtata 36777480
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 18484994 atatatgtatgtatatatatatgtata 18485020
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatata 328
||||||||||||||||||| |||||||
Sbjct: 11529358 acatacatatatgtatgtacatatata 11529384
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 10945016 atatatgtatgtatatatatatgtata 10944990
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| |||| ||||||||
Sbjct: 1309568 atacatatatgtatgtatatatgtatgtata 1309598
Score = 44.1 bits (22), Expect = 0.22
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 42816878 cacacacatacatatatatatatatatatatatatata 42816841
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 37952546 atatatgtatgtatatatatatgtat 37952571
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 36898394 atacatatatgtatgtatatatatat 36898419
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 23444375 atacatatatgtatgtatatatatat 23444400
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 18484978 atatatgtatgtatatatatatgtat 18485003
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 18484950 atatatgtatgtatatatatatgtat 18484975
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 11535172 atatatgtatgtatatatatatgtat 11535147
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 309 tatatgtatgtaaatatatatgtata 334
|||||||||||| |||||||||||||
Sbjct: 8846561 tatatgtatgtatatatatatgtata 8846586
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 7818908 atatatgtatgtatatatatatgtat 7818883
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtat 333
||||||||||||||||| ||||||||||||
Sbjct: 38607 atacatatatgtatgtatatatatatgtat 38636
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatata 328
||||||||||||||||||| |||||||
Sbjct: 38583 acatacatatatgtatgtacatatata 38609
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 44397 atatatgtatgtatatatatatgtat 44372
>dbj|AP007204.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0008D05
Length = 134776
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtat 333
||||||||||||||||| ||||||||||||
Sbjct: 38607 atacatatatgtatgtatatatatatgtat 38636
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatata 328
||||||||||||||||||| |||||||
Sbjct: 38583 acatacatatatgtatgtacatatata 38609
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 44397 atatatgtatgtatatatatatgtat 44372
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 52.0 bits (26), Expect = 0.001
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtat 333
||||||||||||||||| ||||||||||||
Sbjct: 11531600 atacatatatgtatgtatatatatatgtat 11531629
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 36696836 atatatgtatgtatatatatatgtata 36696810
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 18406277 atatatgtatgtatatatatatgtata 18406303
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatata 328
||||||||||||||||||| |||||||
Sbjct: 11531576 acatacatatatgtatgtacatatata 11531602
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 10947234 atatatgtatgtatatatatatgtata 10947208
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| |||| ||||||||
Sbjct: 1311766 atacatatatgtatgtatatatgtatgtata 1311796
Score = 44.1 bits (22), Expect = 0.22
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 42736208 cacacacatacatatatatatatatatatatatatata 42736171
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 37871876 atatatgtatgtatatatatatgtat 37871901
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 36817724 atacatatatgtatgtatatatatat 36817749
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 23365658 atacatatatgtatgtatatatatat 23365683
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 18406261 atatatgtatgtatatatatatgtat 18406286
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 18406233 atatatgtatgtatatatatatgtat 18406258
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 11537390 atatatgtatgtatatatatatgtat 11537365
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 309 tatatgtatgtaaatatatatgtata 334
|||||||||||| |||||||||||||
Sbjct: 8848779 tatatgtatgtatatatatatgtata 8848804
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 7821126 atatatgtatgtatatatatatgtat 7821101
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
|||||||||| |||||||||| || |||||||||||||
Sbjct: 27506197 cacacacatatatatatgtatatatatatatatgtata 27506160
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatatatgtata 334
|||||||||||||||| || |||||||||||||
Sbjct: 2755843 acatacatatatgtatatatatatatatgtata 2755875
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 24730820 atatatgtatgtatatatatatgtata 24730846
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 20728866 atatatgtatgtatatatatatgtata 20728892
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 10418040 atatatgtatgtatatatatatgtata 10418066
Score = 46.1 bits (23), Expect = 0.056
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 300 acacatacatatatgtatgtaaatatatatgtata 334
||||||| |||||||||| || |||||||||||||
Sbjct: 4993549 acacatatatatatgtatatatatatatatgtata 4993515
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 2754720 atatatgtatgtatatatatatgtata 2754746
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 24730804 atatatgtatgtatatatatatgtat 24730829
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 309 tatatgtatgtaaatatatatgtata 334
|||||||||||| |||||||||||||
Sbjct: 20728917 tatatgtatgtatatatatatgtata 20728942
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 309 tatatgtatgtaaatatatatgtata 334
|||||||||||| |||||||||||||
Sbjct: 11155608 tatatgtatgtatatatatatgtata 11155583
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtat 333
||||||||||||| ||||||||||||
Sbjct: 10418070 atatatgtatgtatatatatatgtat 10418095
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI35, mRNA
sequence
Length = 350
Score = 50.1 bits (25), Expect = 0.004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 25 gtacctgcccgggcggccgctcgaa 1
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0458D06
Length = 166038
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 40714 atgtgtgggaaggccttgacaatggccct 40686
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0462E11
Length = 166115
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 134898 atgtgtgggaaggccttgacaatggccct 134870
>gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017371, whole
genome shotgun sequence
Length = 79719
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 11556 atgtgtgggaaggccttgacaatggccct 11528
>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0529C07
Length = 174011
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatatatgtata 334
|||||||||||||||| || |||||||||||||
Sbjct: 167590 acatacatatatgtatatatatatatatgtata 167622
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 166467 atatatgtatgtatatatatatgtata 166493
>ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1116
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 701 atgtgtgggaaggccttgacaatggccct 673
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 50.1 bits (25), Expect = 0.004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatatatgtata 334
|||||||||||||||| || |||||||||||||
Sbjct: 2719518 acatacatatatgtatatatatatatatgtata 2719550
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 2718395 atatatgtatgtatatatatatgtata 2718421
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 3815127 atgtgtgggaaggccttgacaatggccct 3815099
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
|||| |||||||||||| |||||||||||||
Sbjct: 26388580 atacgtatatgtatgtatatatatatgtata 26388550
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1316 gggatgccaagctccacggcgcacctcagtg 1346
|||||||||||||| ||||||||||| ||||
Sbjct: 22034494 gggatgccaagctctacggcgcacctgagtg 22034524
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 11001071 atatatgtatgtatatatatatgtata 11001097
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 11000943 atatatgtatgtatatatatatgtata 11000969
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 4021718 atatatgtatgtatatatatatgtata 4021692
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 16393934 atacatatatgtatgtatatatatat 16393959
Score = 44.1 bits (22), Expect = 0.22
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 647101 cacacacatacatatatatatatatatatatatatata 647064
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 3937568 atgtgtgggaaggccttgacaatggccct 3937540
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 4142080 atatatgtatgtatatatatatgtata 4142054
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 3937568 atgtgtgggaaggccttgacaatggccct 3937540
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1316 gggatgccaagctccacggcgcacctcagtg 1346
|||||||||||||| ||||||||||| ||||
Sbjct: 21147292 gggatgccaagctctacggcgcacctgagtg 21147322
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 4142080 atatatgtatgtatatatatatgtata 4142054
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 767 atgtgtgggaaggctttgacaatggccct 795
|||||||||||||| ||||||||||||||
Sbjct: 4047601 atgtgtgggaaggccttgacaatggccct 4047573
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 304 atacatatatgtatgtaaatatatatgtata 334
|||| |||||||||||| |||||||||||||
Sbjct: 26626667 atacgtatatgtatgtatatatatatgtata 26626637
Score = 46.1 bits (23), Expect = 0.056
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1316 gggatgccaagctccacggcgcacctcagtg 1346
|||||||||||||| ||||||||||| ||||
Sbjct: 22272581 gggatgccaagctctacggcgcacctgagtg 22272611
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 11240755 atatatgtatgtatatatatatgtata 11240781
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 11240627 atatatgtatgtatatatatatgtata 11240653
Score = 46.1 bits (23), Expect = 0.056
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 308 atatatgtatgtaaatatatatgtata 334
||||||||||||| |||||||||||||
Sbjct: 4254192 atatatgtatgtatatatatatgtata 4254166
Score = 44.1 bits (22), Expect = 0.22
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 304 atacatatatgtatgtaaatatatat 329
||||||||||||||||| ||||||||
Sbjct: 16632021 atacatatatgtatgtatatatatat 16632046
Score = 44.1 bits (22), Expect = 0.22
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 880675 cacacacatacatatatatatatatatatatatatata 880638
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 279 gtacctgcccgggcggccgctcga 302
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 145 gtacctgcccgggcggccgctcga 168
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 269 gtacctgcccgggcggccgctcga 292
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 246 gtacctgcccgggcggccgctcga 269
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 147 gtacctgcccgggcggccgctcga 170
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 420 gtacctgcccgggcggccgctcga 443
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 207 gtacctgcccgggcggccgctcga 230
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 315 gtacctgcccgggcggccgctcga 338
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 48.1 bits (24), Expect = 0.014
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 201 gtacctgcccgggcggccgctcga 224
>gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022921, whole
genome shotgun sequence
Length = 6663
Score = 48.1 bits (24), Expect = 0.014
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 957 tgctctcgtggaacagagtcgccccgtgcagctcctcgaacggtgacg 1004
||||||||| |||||| |||| |||||||| ||||||||||| ||||
Sbjct: 6504 tgctctcgtcgaacagcctcgcgccgtgcaggtcctcgaacggcgacg 6551
Score = 46.1 bits (23), Expect = 0.056
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 554 ttcccgccatccttccgtgaaggaatcgccttccggcattgagccaggagcttgacgcac 613
|||||||| ||||| ||||||||||| ||||| ||| ||||| |||| ||| |||||
Sbjct: 5930 ttcccgccctcctttcgtgaaggaatagcctttttgcactgagctaggatcttcacgcag 5989
Query: 614 tcctcatcggtcaggtggtgcagcacaagct 644
|| || ||| ||| ||| ||||| |||||||
Sbjct: 5990 tcatcgtcgctcaagtgatgcagaacaagct 6020
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 291 tacctgcccgggcggccgctcga 313
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 116 tacctgcccgggcggccgctcga 138
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 361 tacctgcccgggcggccgctcga 383
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 339 tacctgcccgggcggccgctcga 361
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 244 tacctgcccgggcggccgctcga 266
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 141 tacctgcccgggcggccgctcga 163
>dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07737T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1024, genomic survey sequence
Length = 261
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 165 tacctgcccgggcggccgctcga 187
>dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09929T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5009, genomic survey sequence
Length = 356
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 219 tacctgcccgggcggccgctcga 241
>dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10685T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7008, genomic survey sequence
Length = 218
Score = 46.1 bits (23), Expect = 0.056
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 183 tacctgcccgggcggccgctcga 205
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,189,563
Number of Sequences: 438736
Number of extensions: 2189563
Number of successful extensions: 26696
Number of sequences better than 0.5: 248
Number of HSP's better than 0.5 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18418
Number of HSP's gapped (non-prelim): 8276
length of query: 1521
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1500
effective length of database: 2,791,206,460
effective search space: 4186809690000
effective search space used: 4186809690000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)