BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (j... 167 9e-039
dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA... 167 9e-039
gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid ... 159 2e-036
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 96 3e-017
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 96 3e-017
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|CF311692.1|CF311692 ABF--07-B02.g1 ABF3-overexpressing t... 48 0.006
dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|CB666810.1|CB666810 OSJNEd13N19.f OSJNEd Oryza sativa (j... 46 0.022
gb|CF295022.1|CF295022 30DGS--04-M10.b1 Rice leaf plasmid c... 46 0.022
gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) c... 46 0.022
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.022
gb|AC118288.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|AACV01010823.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 42 0.35
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.35
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.35
>gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I16 3', mRNA sequence
Length = 764
Score = 167 bits (84), Expect = 9e-039
Identities = 266/326 (81%), Gaps = 3/326 (0%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 102 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 161
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatcatcttcc 393
|| ||||| || |||||||| ||||||||| | ||||||| | ||| | || | |||
Sbjct: 162 aaactccagccaagcttctgaagtttctcaaaactgtatatggtgttctcttccacatcc 221
Query: 394 acaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatca 453
||||| ||||||||||||| |||| |||||| |||||||| | |||||||||||||||
Sbjct: 222 acaaagtttttgggataagtataagttggatataaggtctttaaaatgtttatcatatca 281
Query: 454 gcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaa 513
| ||| |||||| | ||| ||||||||||||||||| || | |||| ||||| ||
Sbjct: 282 gagactcttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatac 338
Query: 514 gccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttca 573
|||| ||| ||||| | |||||||||||||||||||| | ||| | |||| | |||||
Sbjct: 339 gccaaaaggagagcattggcaacatcacgaacatccactacattccggagtctattttcg 398
Query: 574 acagtctcgcgatctcctgtgaaata 599
||||| || ||||||||| |||||||
Sbjct: 399 acagtgtcacgatctcctttgaaata 424
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full
insert sequence
Length = 1094
Score = 167 bits (84), Expect = 9e-039
Identities = 266/326 (81%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 987 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 928
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatcatcttcc 393
|| ||||| || |||||||| ||||||||| | ||||||| | ||| | || | |||
Sbjct: 927 aaactccagccaagcttctgaagtttctcaaaactgtatatggtgttctcttccacatcc 868
Query: 394 acaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatca 453
||||| ||||||||||||| |||| |||||| |||||||| | |||||||||||||||
Sbjct: 867 acaaagtttttgggataagtataagttggatataaggtctttaaaatgtttatcatatca 808
Query: 454 gcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaa 513
| ||| |||||| | ||| ||||||||||||||||| || | |||| ||||| ||
Sbjct: 807 gagactcttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatac 751
Query: 514 gccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttca 573
|||| ||| ||||| | |||||||||||||||||||| | ||| | |||| | |||||
Sbjct: 750 gccaaaaggagagcattggcaacatcacgaacatccactacattccggagtctattttcg 691
Query: 574 acagtctcgcgatctcctgtgaaata 599
||||| || ||||||||| |||||||
Sbjct: 690 acagtgtcacgatctcctttgaaata 665
>gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-D12, mRNA sequence
Length = 590
Score = 159 bits (80), Expect = 2e-036
Identities = 265/326 (81%), Gaps = 3/326 (0%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||| ||| |||||| |||||| ||
Sbjct: 185 aggatgccaaatgctttgtaggattccacgctgtcccggggggtttcctcaataggcctg 244
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtatacagagttgacatcatcttcc 393
|| ||||| || |||||||| ||||||||| | ||||||| | ||| | || | |||
Sbjct: 245 aaactccagccaagcttctgaagtttctcaaaactgtatatggtgttctcttccgcatcc 304
Query: 394 acaaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatca 453
||||| ||||||||||||| |||| |||||| |||||||| | |||||||||||||||
Sbjct: 305 acaaagtttttgggataagtataagttggatataaggtctttaaaatgtttatcatatca 364
Query: 454 gcaacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaa 513
| ||| |||||| | ||| ||||||||||||||||| || | |||| ||||| ||
Sbjct: 365 gagactcttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatac 421
Query: 514 gccagaagaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttca 573
|||| ||| ||||| | |||||||||||||||||||| | ||| | |||| | |||||
Sbjct: 422 gccaaaaggagagcattggcaacatcacgaacatccactacattccggagtctattttcg 481
Query: 574 acagtctcgcgatctcctgtgaaata 599
||||| || ||||||||| |||||||
Sbjct: 482 acagtgtcacgatctcctttgaaata 507
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02,
*** SEQUENCING IN PROGRESS ***
Length = 140327
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 29962 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 29903
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 29902 aaactccagccaagcttctgaagtttctcaaaactgtata 29863
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 29462 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 29403
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 29402 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 29346
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 29345 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 29286
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 29285 tcacgatctcctg 29273
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 16014 ttgcgtgtgaactgcagatgtatcgtcc 15987
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 2155607 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 2155666
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 2155667 aaactccagccaagcttctgaagtttctcaaaactgtata 2155706
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 2156107 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 2156166
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 2156167 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 2156223
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 2156224 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 2156283
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 2156284 tcacgatctcctg 2156296
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 2169486 ttgcgtgtgaactgcagatgtatcgtcc 2169513
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0029G06
Length = 169711
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 23803 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 23862
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 23863 aaactccagccaagcttctgaagtttctcaaaactgtata 23902
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 24303 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24362
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 24363 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 24419
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 24420 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24479
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 24480 tcacgatctcctg 24492
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 37682 ttgcgtgtgaactgcagatgtatcgtcc 37709
>gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014581, whole
genome shotgun sequence
Length = 21089
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 12212 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 12153
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 12152 aaactccagccaagcttctgaagtttctcaaaactgtata 12113
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Minus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 11712 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 11653
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 11652 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 11596
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 11595 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 11536
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 11535 tcacgatctcctg 11523
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 6057965 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 6058024
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 6058025 aaactccagccaagcttctgaagtttctcaaaactgtata 6058064
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 6058465 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 6058524
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 6058525 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 6058581
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 6058582 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 6058641
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 6058642 tcacgatctcctg 6058654
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 6077575 ttgcgtgtgaactgcagatgtatcgtcc 6077602
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 23756702 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 23756761
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 23756762 aaactccagccaagcttctgaagtttctcaaaactgtata 23756801
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 23757202 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 23757261
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 23757262 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 23757318
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 23757319 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 23757378
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 23757379 tcacgatctcctg 23757391
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 23776312 ttgcgtgtgaactgcagatgtatcgtcc 23776339
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 95.6 bits (48), Expect = 3e-017
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 274 aggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggcttg 333
|||||||||||||||||||||||||| || |||| ||||||| |||||| |||||| ||
Sbjct: 24690122 aggatgccaaatgctttgtaggattccacgctgtcccggagggtttcctcaataggcctg 24690181
Query: 334 aagctccaccccagcttctgcagtttctcagagctgtata 373
|| ||||| || |||||||| ||||||||| | |||||||
Sbjct: 24690182 aaactccagccaagcttctgaagtttctcaaaactgtata 24690221
Score = 93.7 bits (47), Expect = 1e-016
Identities = 157/193 (81%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 400 tttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcagcaact 459
||||||||||||| |||| |||||| |||||||| | |||||||||||||||| |||
Sbjct: 24690622 tttttgggataagtataagttggatataaggtctttaaaatgtttatcatatcagagact 24690681
Query: 460 tttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaagccaga 519
|||||| | ||| ||||||||||||||||| || | |||| ||||| || |||| |
Sbjct: 24690682 cttattggagctgagctgcagatgtatcgtccgga---tgctggattttcatacgccaaa 24690738
Query: 520 agaagagcgtcagcaacatcacgaacatccaccatatttctgagtatgttttcaacagtc 579
|| ||||| | |||||||||||||||||||| | ||| | |||| | ||||| |||||
Sbjct: 24690739 aggagagcattggcaacatcacgaacatccactacattccggagtctattttcgacagtg 24690798
Query: 580 tcgcgatctcctg 592
|| ||||||||||
Sbjct: 24690799 tcacgatctcctg 24690811
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 24704001 ttgcgtgtgaactgcagatgtatcgtcc 24704028
>gb|CF311692.1|CF311692 ABF--07-B02.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-B02, mRNA sequence
Length = 553
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 457 ttgcgtgtgaactgcagatgtatcgtcc 484
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
insert sequence
Length = 1737
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 1240 ttgcgtgtgaactgcagatgtatcgtcc 1213
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
insert sequence
Length = 1232
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 793 ttgcgtgtgaactgcagatgtatcgtcc 766
>gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014583, whole
genome shotgun sequence
Length = 16067
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 464 ttgcatgtgaactgcagatgtatcgtcc 491
|||| |||||||||||||||||||||||
Sbjct: 4940 ttgcgtgtgaactgcagatgtatcgtcc 4967
>gb|CB666810.1|CB666810 OSJNEd13N19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N19 5', mRNA sequence
Length = 825
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 737 cagaagtagagcatcagcgacatcacggacatccaccat 699
>gb|CF295022.1|CF295022 30DGS--04-M10.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--04-M10, mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 282 cagaagtagagcatcagcgacatcacggacatccaccat 320
>gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020320, whole
genome shotgun sequence
Length = 17865
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 2770 cagaagtagagcatcagcgacatcacggacatccaccat 2808
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0052C07, complete sequence
Length = 154528
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 24142 cagaagtagagcatcagcgacatcacggacatccaccat 24104
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 8258439 cagaagtagagcatcagcgacatcacggacatccaccat 8258477
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 46.1 bits (23), Expect = 0.022
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 516 cagaagaagagcgtcagcaacatcacgaacatccaccat 554
|||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 17732250 cagaagtagagcatcagcgacatcacggacatccaccat 17732288
>gb|AC118288.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0077L08, complete sequence
Length = 115640
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 15990 ttaacctgctggcaatgctgt 15970
>gb|AACV01010823.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010823, whole
genome shotgun sequence
Length = 47929
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 2391 ttaacctgctggcaatgctgt 2411
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 927611 ttaacctgctggcaatgctgt 927591
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 1826367 ttaacctgctggcaatgctgt 1826347
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 1826367 ttaacctgctggcaatgctgt 1826347
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 ttaacctgctggcaatgctgt 189
|||||||||||||||||||||
Sbjct: 1837216 ttaacctgctggcaatgctgt 1837196
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 830,232
Number of Sequences: 438736
Number of extensions: 830232
Number of successful extensions: 14560
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14261
Number of HSP's gapped (non-prelim): 289
length of query: 622
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 601
effective length of database: 2,791,206,460
effective search space: 1677515082460
effective search space used: 1677515082460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)