BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA758807.1|CA758807 BR030025000_PLATE_E11_85_086.ab1 OA ... 222 4e-055
gb|CB647560.1|CB647560 OSJNEb10I16.f OSJNEb Oryza sativa (j... 222 4e-055
gb|CF328354.1|CF328354 NACL--03-D12.b1 Rice callus plasmid ... 222 4e-055
dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA... 222 4e-055
gb|CA754187.1|CA754187 BR040011000_PLATE_C08_59_065.ab1 OA ... 151 1e-033
gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (j... 147 2e-032
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 109 4e-021
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 109 4e-021
dbj|AP004680.3| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) c... 109 4e-021
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 109 4e-021
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 109 4e-021
gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid ... 103 2e-019
gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressin... 68 1e-008
dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (j... 58 1e-005
gb|CB677602.1|CB677602 OSJNEe14L22.f OSJNEe Oryza sativa (j... 58 1e-005
gb|CF305867.1|CF305867 HDA1--01-P14.g1 OsHDAC1-overexpressi... 58 1e-005
dbj|AP005440.2| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP004646.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01017440.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 58 1e-005
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 58 1e-005
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|CB672491.1|CB672491 OSJNEe06I21.f OSJNEe Oryza sativa (j... 52 7e-004
gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AC108762.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AU095269.1|AU095269 AU095269 Rice cDNA from immature lea... 48 0.011
gb|CF311692.1|CF311692 ABF--07-B02.g1 ABF3-overexpressing t... 48 0.011
dbj|AP003018.2| Oryza sativa (japonica cultivar-group) geno... 48 0.011
dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.011
dbj|AK107469.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.011
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 48 0.011
dbj|AP003021.2| Oryza sativa (japonica cultivar-group) geno... 48 0.011
dbj|AP003856.4| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|AACV01012227.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 48 0.011
ref|NM_187717.1| Oryza sativa (japonica cultivar-group), p... 48 0.011
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 48 0.011
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 48 0.011
dbj|AP003020.2| Oryza sativa (japonica cultivar-group) geno... 48 0.011
dbj|AP003631.3| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|D48135.1|D48135 RICS14195A Rice green shoot Oryza sativa... 46 0.045
gb|CB640019.1|CB640019 OSJNEa12O24.f OSJNEa Oryza sativa (j... 46 0.045
gb|CB666810.1|CB666810 OSJNEd13N19.f OSJNEd Oryza sativa (j... 46 0.045
gb|CF295022.1|CF295022 30DGS--04-M10.b1 Rice leaf plasmid c... 46 0.045
gb|CF303289.1|CF303289 ABF1--01-N17.g1 ABF3-overexpressing ... 46 0.045
dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.045
dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.045
gb|AACV01020320.1| Oryza sativa (japonica cultivar-group) c... 46 0.045
gb|AU062767.1|AU062767 AU062767 Rice callus Oryza sativa (j... 44 0.18
dbj|AP004655.2| Oryza sativa (japonica cultivar-group) chro... 44 0.18
dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.18
dbj|AP005415.2| Oryza sativa (japonica cultivar-group) geno... 44 0.18
gb|AACV01017860.1| Oryza sativa (japonica cultivar-group) c... 44 0.18
ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.18
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.18
>gb|CA758807.1|CA758807 BR030025000_PLATE_E11_85_086.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030025000_PLATE_E11_85_086.ab1 similar to NP_180918.1|
(NM_128920) putative cinnamoyl-CoA reductase
[Arabidopsis thaliana] gi|2459448|gb|AAB80683.1|
(AC002332) putative cinnamoyl-CoA reductase [Arabidopsis
thaliana..., mRNA sequence
Length = 622
Score = 222 bits (112), Expect = 4e-055
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||| |||||||||||||| | ||||||||||||||||||||||| || || |||| |
Sbjct: 135 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatg 194
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| |||||||
Sbjct: 195 ccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaagg 254
Query: 240 ctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcc 299
|||||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 255 ctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcc 314
Query: 300 atgtagctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctc 359
|||| || |||||||| | || ||| || ||||||||||||| |||||||||||||
Sbjct: 315 atgtcgccagccctgtaccctcgggccgatccaccaaccctgaggtagaggtcatagctc 374
Query: 360 ccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgag 419
| ||||||||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||
Sbjct: 375 ctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagttaagcgag 434
Query: 420 ttgtggtggtgtcttc 435
|||| ||||||||||
Sbjct: 435 ttgtcatggtgtcttc 450
>gb|CB647560.1|CB647560 OSJNEb10I16.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I16 5', mRNA sequence
Length = 631
Score = 222 bits (112), Expect = 4e-055
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||| |||||||||||||| | ||||||||||||||||||||||| || || |||| |
Sbjct: 127 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatg 186
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| |||||||
Sbjct: 187 ccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaagg 246
Query: 240 ctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcc 299
|||||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 247 ctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcc 306
Query: 300 atgtagctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctc 359
|||| || |||||||| | || ||| || ||||||||||||| |||||||||||||
Sbjct: 307 atgtcgccagccctgtaccctcgggccgatccaccaaccctgaggtagaggtcatagctc 366
Query: 360 ccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgag 419
| ||||||||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||
Sbjct: 367 ctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagttaagcgag 426
Query: 420 ttgtggtggtgtcttc 435
|||| ||||||||||
Sbjct: 427 ttgtcatggtgtcttc 442
Score = 67.9 bits (34), Expect = 1e-008
Identities = 112/138 (81%)
Strand = Plus / Plus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| | |||||||||||||| | ||||| ||||| |||||||||||| ||||
Sbjct: 494 tgaagacagttggtcagatgaggaattatgcagaaagaatcaggattggtattacctttc 553
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
||||| || | || || || ||| |||||| |||||||||||| ||||||||| ||||
Sbjct: 554 gaaaacggtggcagagcgtgaggcttttgcttatgcagcaaaaactgggctggacattgt 613
Query: 607 aactgtttgtccgtcatt 624
|||| |||| || |||||
Sbjct: 614 aactatttgcccatcatt 631
>gb|CF328354.1|CF328354 NACL--03-D12.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-D12, mRNA sequence
Length = 514
Score = 222 bits (112), Expect = 4e-055
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||| |||||||||||||| | ||||||||||||||||||||||| || || |||| |
Sbjct: 128 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatg 187
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| |||||||
Sbjct: 188 ccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaagg 247
Query: 240 ctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcc 299
|||||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 248 ctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcc 307
Query: 300 atgtagctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctc 359
|||| || |||||||| | || ||| || ||||||||||||| |||||||||||||
Sbjct: 308 atgtcgccagccctgtaccctcgggccgatccaccaaccctgaggtagaggtcatagctc 367
Query: 360 ccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgag 419
| ||||||||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||
Sbjct: 368 ctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagttaagcgag 427
Query: 420 ttgtggtggtgtcttc 435
|||| ||||||||||
Sbjct: 428 ttgtcatggtgtcttc 443
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full
insert sequence
Length = 1094
Score = 222 bits (112), Expect = 4e-055
Identities = 265/316 (83%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||| |||||||||||||| | ||||||||||||||||||||||| || || |||| |
Sbjct: 102 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatg 161
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| |||||||
Sbjct: 162 ccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaagg 221
Query: 240 ctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcc 299
|||||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 222 ctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcc 281
Query: 300 atgtagctagccctgtcctttcccatcgaccctccaaccctgaggtggaggtcatagctc 359
|||| || |||||||| | || ||| || ||||||||||||| |||||||||||||
Sbjct: 282 atgtcgccagccctgtaccctcgggccgatccaccaaccctgaggtagaggtcatagctc 341
Query: 360 ccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgag 419
| ||||||||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||
Sbjct: 342 ctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagttaagcgag 401
Query: 420 ttgtggtggtgtcttc 435
|||| ||||||||||
Sbjct: 402 ttgtcatggtgtcttc 417
Score = 147 bits (74), Expect = 2e-032
Identities = 411/522 (78%), Gaps = 6/522 (1%)
Strand = Plus / Plus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| | |||||||||||||| | ||||| ||||| |||||||||||| ||||
Sbjct: 469 tgaagacagttggtcagatgaggaattatgcagaaagaatcaggattggtattacctttc 528
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
||||| || | || || || ||| |||||| |||||||||||| ||||||||| ||||
Sbjct: 529 gaaaacggtggcagagcgtgaggcttttgcttatgcagcaaaaactgggctggacattgt 588
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
|||| |||| || ||||| || |||||||||| ||||| |||||||||| ||| ||
Sbjct: 589 aactatttgcccatcattggtgattggacccttaatgcaatctacagtaaacgcgagtag 648
Query: 667 cgaaatgatccttaaatatttcaa---agatctcgagactgttgaaaatgtactcagtaa 723
|| | || |||| |||||||| ||||| || ||||| |||||| |||| | ||
Sbjct: 649 taaagttctcattaactatttcaaaggagatcgtgacactgtcgaaaatagactccggaa 708
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| ||||||||||||| ||||||| ||| || | || ||||| || |||
Sbjct: 709 tgtagtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatcc---agc 765
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|| ||||||||||||||||| ||| | |||||| | | ||||||||||||||||| |
Sbjct: 766 atccggacgatacatctgcagctcagctccaataagagtctctgatatgataaacatttt 825
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtcaactc 903
|||||| | ||||| |||| ||||||||||||| |||||||| | || | ||| |
Sbjct: 826 aaagaccttatatccaacttatacttatcccaaaaactttgtggatgtggaagagaacac 885
Query: 904 tgtatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatc 963
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |
Sbjct: 886 catatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaac 945
Query: 964 cctccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||||| |||| || ||||||||||| ||||||||||||||
Sbjct: 946 cctccgggacagcgtggaatcctacaaagcatttggcatcct 987
>gb|CA754187.1|CA754187 BR040011000_PLATE_C08_59_065.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040011000_PLATE_C08_59_065.ab1 similar to
cinnamoyl-CoA reductase [Pinus taeda], mRNA sequence
Length = 618
Score = 151 bits (76), Expect = 1e-033
Identities = 166/196 (84%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgcta 179
|||| |||||||||||||| | ||||||||||||||||||||||| || || |||| |
Sbjct: 105 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatg 164
Query: 180 gcaagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaagg 239
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| |||||||
Sbjct: 165 ccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaagg 224
Query: 240 ctgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcc 299
|||||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||||||
Sbjct: 225 ctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcc 284
Query: 300 atgtagctagccctgt 315
|||| || ||||||||
Sbjct: 285 atgtcgccagccctgt 300
>gb|CB647561.1|CB647561 OSJNEb10I16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10I16 3', mRNA sequence
Length = 764
Score = 147 bits (74), Expect = 2e-032
Identities = 411/522 (78%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 487 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 546
||||||| | |||||||||||||| | ||||| ||||| |||||||||||| ||||
Sbjct: 620 tgaagacagttggtcagatgaggaattatgcagaaagaatcaggattggtattacctttc 561
Query: 547 caaaacactgtcggaacgagaagctcttgcttttgcagcaaaaacagggctggacgttgt 606
||||| || | || || || ||| |||||| |||||||||||| ||||||||| ||||
Sbjct: 560 gaaaacggtggcagagcgtgaggcttttgcttatgcagcaaaaactgggctggacattgt 501
Query: 607 aactgtttgtccgtcattagtatttggacccttgatgcagcctacagtaaatttgagcag 666
|||| |||| || ||||| || |||||||||| ||||| |||||||||| ||| ||
Sbjct: 500 aactatttgcccatcattggtgattggacccttaatgcaatctacagtaaacgcgagtag 441
Query: 667 cgaaatgatccttaaatatttcaa---agatctcgagactgttgaaaatgtactcagtaa 723
|| | || |||| |||||||| ||||| || ||||| |||||| |||| | ||
Sbjct: 440 taaagttctcattaactatttcaaaggagatcgtgacactgtcgaaaatagactccggaa 381
Query: 724 tatggtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagc 783
| | |||||| ||||||||||||| ||||||| ||| || | || ||||| || |||
Sbjct: 380 tgtagtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatcc---agc 324
Query: 784 gtctggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatact 843
|| ||||||||||||||||| ||| | |||||| | | ||||||||||||||||| |
Sbjct: 323 atccggacgatacatctgcagctcagctccaataagagtctctgatatgataaacatttt 264
Query: 844 gaagaccatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtcaactc 903
|||||| | ||||| |||| ||||||||||||| |||||||| | || | ||| |
Sbjct: 263 aaagaccttatatccaacttatacttatcccaaaaactttgtggatgtggaagagaacac 204
Query: 904 tgtatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatc 963
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |
Sbjct: 203 catatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaac 144
Query: 964 cctccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||||| |||| || ||||||||||| ||||||||||||||
Sbjct: 143 cctccgggacagcgtggaatcctacaaagcatttggcatcct 102
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 347 gaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggca 406
|||||||||||||| ||||||||||| ||| |||||||| ||||| ||| ||||||||
Sbjct: 760 gaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggca 701
Query: 407 aaagttaggcgagttgtggtggtgtcttc 435
||||||| ||||||||| ||||||||||
Sbjct: 700 aaagttaagcgagttgtcatggtgtcttc 672
>dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1008_D02,
*** SEQUENCING IN PROGRESS ***
Length = 140327
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Plus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 27917 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 27976
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 27977 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 28036
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 28037 tgtcgccagccctgt 28051
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 28394 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 28453
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 28454 aggcaaaagttaagcgagttgtcatggtgtcttc 28487
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 29863 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 29922
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 29923 tccgggacagcgtggaatcctacaaagcatttggcatcct 29962
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 28905 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 28964
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 28965 gacccttaatgcaatctacagtaaa 28989
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 13294 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 13353
Query: 134 cg 135
||
Sbjct: 13354 cg 13355
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 29314 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 29370
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 29371 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 29430
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 29431 accttatatccaacttatacttatcccaaaaa 29462
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 27383 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 27428
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 32770 gtgtgcgtcaccggcgccggcggcttcgtcgc 32801
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 15987 ggacgatacatctgcagttcacacgcaa 16014
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 2157652 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 2157593
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 2157592 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 2157533
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 2157532 tgtcgccagccctgt 2157518
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 2157175 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 2157116
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 2157115 aggcaaaagttaagcgagttgtcatggtgtcttc 2157082
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 2155706 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 2155647
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 2155646 tccgggacagcgtggaatcctacaaagcatttggcatcct 2155607
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 2156664 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 2156605
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 2156604 gacccttaatgcaatctacagtaaa 2156580
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 2171866 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 2171807
Query: 134 cg 135
||
Sbjct: 2171806 cg 2171805
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 2158186 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 2158141
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 2156255 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 2156199
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 2156198 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 2156139
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 2156138 accttatatccaacttatacttatcccaaaaa 2156107
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 2169513 ggacgatacatctgcagttcacacgcaa 2169486
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 2152781 gtgtgcgtcaccggcgccggcggcttcgtcgc 2152750
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0029G06
Length = 169711
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 25848 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 25789
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 25788 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 25729
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 25728 tgtcgccagccctgt 25714
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 25371 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 25312
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 25311 aggcaaaagttaagcgagttgtcatggtgtcttc 25278
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 23902 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 23843
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 23842 tccgggacagcgtggaatcctacaaagcatttggcatcct 23803
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 24860 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 24801
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 24800 gacccttaatgcaatctacagtaaa 24776
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 40062 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 40003
Query: 134 cg 135
||
Sbjct: 40002 cg 40001
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 26382 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 26337
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 24451 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 24395
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 24394 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 24335
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 24334 accttatatccaacttatacttatcccaaaaa 24303
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 37709 ggacgatacatctgcagttcacacgcaa 37682
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 20977 gtgtgcgtcaccggcgccggcggcttcgtcgc 20946
>gb|AACV01014581.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014581, whole
genome shotgun sequence
Length = 21089
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Plus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 10167 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 10226
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 10227 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 10286
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 10287 tgtcgccagccctgt 10301
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 10644 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 10703
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 10704 aggcaaaagttaagcgagttgtcatggtgtcttc 10737
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 12113 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 12172
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 12173 tccgggacagcgtggaatcctacaaagcatttggcatcct 12212
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 11155 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 11214
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 11215 gacccttaatgcaatctacagtaaa 11239
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Plus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 11564 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 11620
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 11621 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 11680
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 11681 accttatatccaacttatacttatcccaaaaa 11712
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 9633 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 9678
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 14976 gtgtgcgtcaccggcgccggcggcttcgtcgc 15007
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 6060010 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 6059951
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 6059950 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 6059891
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 6059890 tgtcgccagccctgt 6059876
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 6059533 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 6059474
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 6059473 aggcaaaagttaagcgagttgtcatggtgtcttc 6059440
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 6058064 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 6058005
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 6058004 tccgggacagcgtggaatcctacaaagcatttggcatcct 6057965
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 6059022 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 6058963
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 6058962 gacccttaatgcaatctacagtaaa 6058938
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 6079955 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 6079896
Query: 134 cg 135
||
Sbjct: 6079895 cg 6079894
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 6060544 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 6060499
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 6058613 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 6058557
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 6058556 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 6058497
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 6058496 accttatatccaacttatacttatcccaaaaa 6058465
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 6077602 ggacgatacatctgcagttcacacgcaa 6077575
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 6055201 gtgtgcgtcaccggcgccggcggcttcgtcgc 6055170
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 23758747 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 23758688
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 23758687 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 23758628
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 23758627 tgtcgccagccctgt 23758613
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 23758270 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 23758211
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 23758210 aggcaaaagttaagcgagttgtcatggtgtcttc 23758177
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 23756801 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 23756742
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 23756741 tccgggacagcgtggaatcctacaaagcatttggcatcct 23756702
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 23757759 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 23757700
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 23757699 gacccttaatgcaatctacagtaaa 23757675
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 23778692 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 23778633
Query: 134 cg 135
||
Sbjct: 23778632 cg 23778631
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 23759281 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 23759236
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 23757350 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 23757294
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 23757293 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 23757234
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 23757233 accttatatccaacttatacttatcccaaaaa 23757202
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 23776339 ggacgatacatctgcagttcacacgcaa 23776312
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 23753938 gtgtgcgtcaccggcgccggcggcttcgtcgc 23753907
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 109 bits (55), Expect = 4e-021
Identities = 115/135 (85%)
Strand = Plus / Minus
Query: 181 caagaatgcccatctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggc 240
|||||||| ||||||| || ||| |||| || ||||| ||||||||||| ||||||||
Sbjct: 24692167 caagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggc 24692108
Query: 241 tgatctgatggactacgacagcattgcatcagcagttgccggctgtgagggtgtcttcca 300
||||||| ||||||| ||||| | || ||||| ||||||||||||||||| ||||||||
Sbjct: 24692107 tgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtcttcca 24692048
Query: 301 tgtagctagccctgt 315
||| || ||||||||
Sbjct: 24692047 tgtcgccagccctgt 24692033
Score = 91.7 bits (46), Expect = 9e-016
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 342 aggtggaggtcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatg 401
|||| |||||||||||||| ||||||||||| ||| |||||||| ||||| ||| |||
Sbjct: 24691690 aggtagaggtcatagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatg 24691631
Query: 402 aggcaaaagttaggcgagttgtggtggtgtcttc 435
|||||||||||| ||||||||| ||||||||||
Sbjct: 24691630 aggcaaaagttaagcgagttgtcatggtgtcttc 24691597
Score = 79.8 bits (40), Expect = 3e-012
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 906 tatacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccc 965
||||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| |||
Sbjct: 24690221 tatacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccc 24690162
Query: 966 tccgtgacactgttgaatcctacaaggcatttggcatcct 1005
|||| |||| || ||||||||||| ||||||||||||||
Sbjct: 24690161 tccgggacagcgtggaatcctacaaagcatttggcatcct 24690122
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| ||||||||| |||||||| |||| || ||||| || |||
Sbjct: 24691179 ttgcttatgcagcaaaaactgggctggacattgtaactatttgcccatcattggtgattg 24691120
Query: 633 gacccttgatgcagcctacagtaaa 657
||||||| ||||| ||||||||||
Sbjct: 24691119 gacccttaatgcaatctacagtaaa 24691095
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 24706381 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 24706322
Query: 134 cg 135
||
Sbjct: 24706321 cg 24706320
Score = 60.0 bits (30), Expect = 3e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 120 agctcctcctctcccggggccaatacgcggtccgcggcaccgtgcg 165
|||| |||||||||||||| | |||||||||||||||||||||||
Sbjct: 24692701 agctgctcctctcccgggggaactacgcggtccgcggcaccgtgcg 24692656
Score = 60.0 bits (30), Expect = 3e-006
Identities = 122/152 (80%), Gaps = 3/152 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 24690770 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 24690714
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 24690713 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 24690654
Query: 848 accatgtatccgtcttacccttatcccaaaaa 879
||| | ||||| |||| |||||||||||||
Sbjct: 24690653 accttatatccaacttatacttatcccaaaaa 24690622
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 24704028 ggacgatacatctgcagttcacacgcaa 24704001
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 24687296 gtgtgcgtcaccggcgccggcggcttcgtcgc 24687265
>gb|CF328355.1|CF328355 NACL--03-D12.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--03-D12, mRNA
sequence
Length = 590
Score = 103 bits (52), Expect = 2e-019
Identities = 222/278 (79%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| ||||||||||||| ||||||| ||| || | || ||||| |||| | ||
Sbjct: 459 gtggatgttcgtgatgttgccaatgctctccttttggcgtatgaaaatccagca---tcc 403
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||||||||||||||| ||| | |||||| | | ||||||||||||||||| | |||
Sbjct: 402 ggacgatacatctgcagctcagctccaataagagtctctgatatgataaacattttaaag 343
Query: 848 accatgtatccgtcttacccttatcccaaaaattttgtggaagatgatgtcaactctgta 907
||| | ||||| |||| ||||||||||||| |||||||| | || | ||| | ||
Sbjct: 342 accttatatccaacttatacttatcccaaaaactttgtggatgcggaagagaacaccata 283
Query: 908 tacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctc 967
||||| | ||||||||| |||||||| || |||| |||| |||||| |||||| ||| |
Sbjct: 282 tacagttttgagaaacttcagaagcttggctggagtttcaggcctattgaggaaaccccc 223
Query: 968 cgtgacactgttgaatcctacaaggcatttggcatcct 1005
|| |||| || ||||||||||| ||||||||||||||
Sbjct: 222 cgggacagcgtggaatcctacaaagcatttggcatcct 185
>gb|CF323681.1|CF323681 HDN--04-H21.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-H21, mRNA sequence
Length = 450
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 121 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 180
Query: 134 cg 135
||
Sbjct: 181 cg 182
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full
insert sequence
Length = 1737
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 502 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 561
Query: 134 cg 135
||
Sbjct: 562 cg 563
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 1213 ggacgatacatctgcagttcacacgcaa 1240
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full
insert sequence
Length = 1232
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 55 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 114
Query: 134 cg 135
||
Sbjct: 115 cg 116
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 766 ggacgatacatctgcagttcacacgcaa 793
>gb|AACV01014583.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014583, whole
genome shotgun sequence
Length = 16067
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
||||||||||||||||| || |||||||| |||||| ||| || |||||||||||||||
Sbjct: 7320 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 7261
Query: 134 cg 135
||
Sbjct: 7260 cg 7259
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 4967 ggacgatacatctgcagttcacacgcaa 4940
>gb|CB674632.1|CB674632 OSJNEe09M09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09M09 5', mRNA sequence
Length = 845
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 43 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 102
Query: 133 c 133
|
Sbjct: 103 c 103
Score = 52.0 bits (26), Expect = 7e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggaggattggta 537
|||||| |||||||||||||||| |||||||||||| ||||| |||||
Sbjct: 456 gaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggta 505
>gb|CB677602.1|CB677602 OSJNEe14L22.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14L22 5', mRNA sequence
Length = 893
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 95 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 154
Query: 133 c 133
|
Sbjct: 155 c 155
Score = 52.0 bits (26), Expect = 7e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggaggattggta 537
|||||| |||||||||||||||| |||||||||||| ||||| |||||
Sbjct: 508 gaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggta 557
>gb|CF305867.1|CF305867 HDA1--01-P14.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--01-P14, mRNA sequence
Length = 467
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 78 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 137
Query: 133 c 133
|
Sbjct: 138 c 138
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056D04
Length = 158118
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 98677 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 98618
Query: 133 c 133
|
Sbjct: 98617 c 98617
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 97921 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 97879
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1122_A12
Length = 149011
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 53137 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 53078
Query: 133 c 133
|
Sbjct: 53077 c 53077
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 52381 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 52339
>gb|AACV01017440.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017440, whole
genome shotgun sequence
Length = 10400
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 7683 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 7742
Query: 133 c 133
|
Sbjct: 7743 c 7743
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 8439 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 8481
>ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 690
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 33 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 92
Query: 133 c 133
|
Sbjct: 93 c 93
Score = 52.0 bits (26), Expect = 7e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggaggattggta 537
|||||| |||||||||||||||| |||||||||||| ||||| |||||
Sbjct: 472 gaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggta 521
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 4661409 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 4661350
Query: 133 c 133
|
Sbjct: 4661349 c 4661349
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 4660653 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 4660611
Score = 44.1 bits (22), Expect = 0.18
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 77 tgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctc 130
||||| |||||||| ||||| ||| |||||||| ||| || ||||||||||||
Sbjct: 10479978 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 10480031
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 4727724 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 4727665
Query: 133 c 133
|
Sbjct: 4727664 c 4727664
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 4726968 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 4726926
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 4727724 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 4727665
Query: 133 c 133
|
Sbjct: 4727664 c 4727664
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 4726968 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 4726926
Score = 44.1 bits (22), Expect = 0.18
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 77 tgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctc 130
||||| |||||||| ||||| ||| |||||||| ||| || ||||||||||||
Sbjct: 10102695 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 10102748
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 58.0 bits (29), Expect = 1e-005
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| ||| |||||| ||||||||||||||
Sbjct: 4893883 cgtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctc 4893824
Query: 133 c 133
|
Sbjct: 4893823 c 4893823
Score = 46.1 bits (23), Expect = 0.045
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 4893127 gaagacagctggtcagatgaggagacctgcaggaagaatgagg 4893085
Score = 44.1 bits (22), Expect = 0.18
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 77 tgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctc 130
||||| |||||||| ||||| ||| |||||||| ||| || ||||||||||||
Sbjct: 10712452 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 10712505
>gb|CB672491.1|CB672491 OSJNEe06I21.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06I21 5', mRNA sequence
Length = 603
Score = 52.0 bits (26), Expect = 7e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 488 gaagactgctggtcagatgaggattactgcaggaagaaggaggattggta 537
|||||| |||||||||||||||| |||||||||||| ||||| |||||
Sbjct: 458 gaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggta 507
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| |||| || |||||| ||||||||||||||
Sbjct: 45 cgtgtgcgtcaccggcgccggcggattcctcgcctcctggctggtcaagctcctcctctc 104
Query: 133 c 133
|
Sbjct: 105 c 105
>gb|AACV01020319.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020319, whole
genome shotgun sequence
Length = 31205
Score = 50.1 bits (25), Expect = 0.003
Identities = 81/99 (81%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| ||| ||| ||| || ||||||||||||||
Sbjct: 22606 cgtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctc 22547
Query: 133 ccggggccaatacgcggtccgcggcaccgtgcgcgaccc 171
||| ||| ||||| |||| || |||||| ||||||||
Sbjct: 22546 ccgcggc---tacgccgtccacgccaccgtccgcgaccc 22511
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
|||||||||||||||||| ||||| ||| || ||| ||| || ||||||||||||||
Sbjct: 15955 cgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctc 15896
Query: 133 ccg 135
|||
Sbjct: 15895 ccg 15893
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBb0052C07, complete sequence
Length = 154528
Score = 50.1 bits (25), Expect = 0.003
Identities = 81/99 (81%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| ||| ||| ||| || ||||||||||||||
Sbjct: 35496 cgtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctc 35555
Query: 133 ccggggccaatacgcggtccgcggcaccgtgcgcgaccc 171
||| ||| ||||| |||| || |||||| ||||||||
Sbjct: 35556 ccgcggc---tacgccgtccacgccaccgtccgcgaccc 35591
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
|||||||||||||||||| ||||| ||| || ||| ||| || ||||||||||||||
Sbjct: 42146 cgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctc 42205
Query: 133 ccg 135
|||
Sbjct: 42206 ccg 42208
Score = 46.1 bits (23), Expect = 0.045
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 725 atggtggatattcgtgatgttgctgatgctcttcttctg 763
||||||||| | |||||||| ||||||||||| ||||||
Sbjct: 24104 atggtggatgtccgtgatgtcgctgatgctctacttctg 24142
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||||||| ||| ||| || |||||||||||||
Sbjct: 16254 cgtgtgcgtcaccggcgccggcgggttcgtcggctcgtggctcgtcgagctcctcctctc 16313
Query: 133 ccg 135
|||
Sbjct: 16314 ccg 16316
Score = 44.1 bits (22), Expect = 0.18
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| ||| ||| ||| ||| || |||||||||||||||
Sbjct: 26410 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 26469
Query: 134 cg 135
||
Sbjct: 26470 cg 26471
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 50.1 bits (25), Expect = 0.003
Identities = 81/99 (81%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| ||| ||| ||| || ||||||||||||||
Sbjct: 8246970 cgtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctc 8246911
Query: 133 ccggggccaatacgcggtccgcggcaccgtgcgcgaccc 171
||| ||| ||||| |||| || |||||| ||||||||
Sbjct: 8246910 ccgcggc---tacgccgtccacgccaccgtccgcgaccc 8246875
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||||||| ||| ||| || |||||||||||||
Sbjct: 8266326 cgtgtgcgtcaccggcgccggcgggttcgtcggctcgtggctcgtcgagctcctcctctc 8266267
Query: 133 ccg 135
|||
Sbjct: 8266266 ccg 8266264
Score = 46.1 bits (23), Expect = 0.045
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 725 atggtggatattcgtgatgttgctgatgctcttcttctg 763
||||||||| | |||||||| ||||||||||| ||||||
Sbjct: 8258477 atggtggatgtccgtgatgtcgctgatgctctacttctg 8258439
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
|||||||||||||||||| ||||| ||| || ||| ||| || ||||||||||||||
Sbjct: 8240319 cgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctc 8240260
Query: 133 ccg 135
|||
Sbjct: 8240259 ccg 8240257
Score = 44.1 bits (22), Expect = 0.18
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| ||| ||| ||| ||| || |||||||||||||||
Sbjct: 8256171 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 8256112
Query: 134 cg 135
||
Sbjct: 8256111 cg 8256110
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 50.1 bits (25), Expect = 0.003
Identities = 81/99 (81%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||| ||| ||| ||| || ||||||||||||||
Sbjct: 17720781 cgtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctc 17720722
Query: 133 ccggggccaatacgcggtccgcggcaccgtgcgcgaccc 171
||| ||| ||||| |||| || |||||| ||||||||
Sbjct: 17720721 ccgcggc---tacgccgtccacgccaccgtccgcgaccc 17720686
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
||||||||| |||||||| ||||| ||||||| ||| ||| || |||||||||||||
Sbjct: 17740137 cgtgtgcgtcaccggcgccggcgggttcgtcggctcgtggctcgtcgagctcctcctctc 17740078
Query: 133 ccg 135
|||
Sbjct: 17740077 ccg 17740075
Score = 46.1 bits (23), Expect = 0.045
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 725 atggtggatattcgtgatgttgctgatgctcttcttctg 763
||||||||| | |||||||| ||||||||||| ||||||
Sbjct: 17732288 atggtggatgtccgtgatgtcgctgatgctctacttctg 17732250
Score = 46.1 bits (23), Expect = 0.045
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 73 cgtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctc 132
|||||||||||||||||| ||||| ||| || ||| ||| || ||||||||||||||
Sbjct: 17714130 cgtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctc 17714071
Query: 133 ccg 135
|||
Sbjct: 17714070 ccg 17714068
Score = 44.1 bits (22), Expect = 0.18
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 133
|||||||| |||||||| ||||| ||| ||| ||| ||| || |||||||||||||||
Sbjct: 17729982 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 17729923
Query: 134 cg 135
||
Sbjct: 17729922 cg 17729921
>gb|AU095269.1|AU095269 AU095269 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61006, mRNA sequence
Length = 463
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 116 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 163
>gb|CF311692.1|CF311692 ABF--07-B02.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-B02, mRNA sequence
Length = 553
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 788 ggacgatacatctgcagttcacatgcaa 815
||||||||||||||||||||||| ||||
Sbjct: 484 ggacgatacatctgcagttcacacgcaa 457
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0004B13
Length = 142268
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 71570 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 71617
>dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D12, full
insert sequence
Length = 1227
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 119 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 166
>dbj|AK107469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B02, full
insert sequence
Length = 1507
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 81 gtgtgcgtcaccggcgccggcggcttcgtcgc 112
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0040H10
Length = 173301
Score = 48.1 bits (24), Expect = 0.011
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgc 105
|||||||| |||||||| ||||||||||||||
Sbjct: 170489 gtgtgcgtcaccggcgccggcggcttcgtcgc 170458
>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503E05
Length = 168258
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 62385 gatgttgctgatgctcttcttccgactt 62412
>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0697D09
Length = 158479
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 11167 gatgttgctgatgctcttcttccgactt 11194
>gb|AACV01012227.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012227, whole
genome shotgun sequence
Length = 16811
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 15781 gatgttgctgatgctcttcttccgactt 15808
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 14824123 gatgttgctgatgctcttcttccgactt 14824150
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 10144753 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 10144800
>ref|NM_187717.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 987
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 28 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 75
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 3333348 gatgttgctgatgctcttcttccgactt 3333375
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 94440 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 94487
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0498A12
Length = 159749
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 12285 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 12332
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0581F09
Length = 154248
Score = 48.1 bits (24), Expect = 0.011
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 74 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaag 121
||||||||||||||||| || |||||| ||| |||| ||||||||||
Sbjct: 94440 gtgtgcgtgaccggcgccggtggcttcatcgggtcgtggctggtgaag 94487
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 48.1 bits (24), Expect = 0.011
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 740 gatgttgctgatgctcttcttctgactt 767
|||||||||||||||||||||| |||||
Sbjct: 3175528 gatgttgctgatgctcttcttccgactt 3175501
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,938,116
Number of Sequences: 438736
Number of extensions: 1938116
Number of successful extensions: 11215
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10532
Number of HSP's gapped (non-prelim): 672
length of query: 1236
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1215
effective length of database: 2,791,206,460
effective search space: 3391315848900
effective search space used: 3391315848900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)