BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.8
(708 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|D15919.1|D15919 RICC1528A Rice callus Oryza sativa (japo... 180 7e-043
gb|CB684946.1|CB684946 OSJNEf14P06.f OSJNEf Oryza sativa (j... 180 7e-043
gb|CF293135.1|CF293135 30DGS--02-D09.g1 Rice leaf plasmid c... 180 7e-043
dbj|AK058503.1| Oryza sativa (japonica cultivar-group) cDNA... 180 7e-043
dbj|AK066154.1| Oryza sativa (japonica cultivar-group) cDNA... 180 7e-043
ref|XM_468863.1| Oryza sativa (japonica cultivar-group), mRNA 180 7e-043
ref|XM_468864.1| Oryza sativa (japonica cultivar-group), mRNA 180 7e-043
gb|AQ859974.1|AQ859974 nbeb0013L10f CUGI Rice BAC Library (... 139 2e-030
gb|AZ046506.1|AZ046506 nbeb0092I07f CUGI Rice BAC Library (... 139 2e-030
gb|AZ047667.1|AZ047667 nbeb0092G02f CUGI Rice BAC Library (... 139 2e-030
gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 ... 139 2e-030
gb|AACV01007023.1| Oryza sativa (japonica cultivar-group) c... 139 2e-030
ref|NT_107184.1| Oryza sativa (japonica cultivar-group) 139 2e-030
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 139 2e-030
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 139 2e-030
gb|D38874.1|D38874 RICC1813A Rice callus Oryza sativa (japo... 129 2e-027
gb|D38891.1|D38891 RICC2069A Rice callus Oryza sativa (japo... 129 2e-027
gb|D38916.1|D38916 RICC2472A Rice callus Oryza sativa (japo... 129 2e-027
gb|D39577.1|D39577 RICS1051A Rice shoot Oryza sativa (japon... 129 2e-027
gb|D46113.1|D46113 RICS10561A Rice green shoot Oryza sativa... 129 2e-027
gb|D49040.1|D49040 RICS15660A Rice green shoot Oryza sativa... 129 2e-027
gb|C19126.1|C19126 C19126 Rice panicle at ripening stage Or... 129 2e-027
gb|C27766.1|C27766 C27766 Rice callus cDNA Oryza sativa (ja... 129 2e-027
gb|C28478.1|C28478 C28478 Rice callus cDNA Oryza sativa (ja... 129 2e-027
gb|C73447.1|C73447 C73447 Rice panicle at flowering stage O... 129 2e-027
gb|C73848.1|C73848 C73848 Rice panicle (longer than 10cm) O... 129 2e-027
gb|C74188.1|C74188 C74188 Rice panicle shorter than 3cm Ory... 129 2e-027
gb|C97299.1|C97299 C97299 Rice callus Oryza sativa (japonic... 129 2e-027
gb|AU057606.1|AU057606 AU057606 Oryza sativa mature leaf Ni... 129 2e-027
gb|AU057759.1|AU057759 AU057759 Oryza sativa mature leaf Ni... 129 2e-027
gb|AU063218.1|AU063218 AU063218 Rice callus Oryza sativa (j... 129 2e-027
gb|AU066168.1|AU066168 AU066168 Rice shoot Oryza sativa (ja... 129 2e-027
gb|AU070698.1|AU070698 AU070698 Rice cDNA from young root O... 129 2e-027
gb|AU070782.1|AU070782 AU070782 Rice cDNA from young root O... 129 2e-027
gb|AU071252.1|AU071252 AU071252 Rice cDNA from young root O... 129 2e-027
gb|AU066010.2|AU066010 AU066010 Rice green shoot Oryza sati... 129 2e-027
gb|AU089749.1|AU089749 AU089749 Rice green shoot Oryza sati... 129 2e-027
gb|AU091792.1|AU091792 AU091792 Rice callus Oryza sativa (j... 129 2e-027
gb|AU092977.1|AU092977 AU092977 Rice callus Oryza sativa (j... 129 2e-027
gb|AU066344.2|AU066344 AU066344 Rice shoot Oryza sativa (ja... 129 2e-027
gb|AU161116.1|AU161116 AU161116 Rice callus Oryza sativa (j... 129 2e-027
gb|AU164737.1|AU164737 AU164737 Rice cDNA from immature lea... 129 2e-027
gb|AU164741.1|AU164741 AU164741 Rice cDNA from immature lea... 129 2e-027
gb|AU165708.1|AU165708 AU165708 Rice panicle at flowering s... 129 2e-027
gb|AU063651.2|AU063651 AU063651 Rice callus Oryza sativa (j... 129 2e-027
gb|AU184031.1|AU184031 AU184031 Rice root Oryza sativa (jap... 129 2e-027
gb|CA998264.1|CA998264 S234E_D03 Rice cold stress germinati... 129 2e-027
gb|CB685006.1|CB685006 OSJNEf15A24.f OSJNEf Oryza sativa (j... 129 2e-027
gb|CB685007.1|CB685007 OSJNEf15A24.r OSJNEf Oryza sativa (j... 129 2e-027
gb|CF291584.1|CF291584 14ROOT--02-B05.b1 Rice root plasmid ... 129 2e-027
gb|CF297382.1|CF297382 30DGS--08-D13.g1 Rice leaf plasmid c... 129 2e-027
gb|CF299271.1|CF299271 7LEAF--03-D16.b1 Rice leaf plasmid c... 129 2e-027
gb|CF299272.1|CF299272 7LEAF--03-D16.g1 Rice leaf plasmid c... 129 2e-027
gb|CF301585.1|CF301585 7LEAF--06-I03.b1 Rice leaf plasmid c... 129 2e-027
gb|CF307286.1|CF307286 HDA1--06-E10.g1 OsHDAC1-overexpressi... 129 2e-027
gb|CF313048.1|CF313048 HD--01-A16.b1 OsHDAC1-overexpressing... 129 2e-027
gb|CF313163.1|CF313163 HD--01-D05.g1 OsHDAC1-overexpressing... 129 2e-027
gb|CF314883.1|CF314883 HD--03-J13.g1 OsHDAC1-overexpressing... 129 2e-027
gb|CF316071.1|CF316071 HD--05-D15.b1 OsHDAC1-overexpressing... 129 2e-027
gb|CF317073.1|CF317073 HD--06-K03.b1 OsHDAC1-overexpressing... 129 2e-027
gb|CF317074.1|CF317074 HD--06-K03.g1 OsHDAC1-overexpressing... 129 2e-027
gb|CF318793.1|CF318793 HD--09-B01.g1 OsHDAC1-overexpressing... 129 2e-027
gb|CF319373.1|CF319373 HD--09-N16.b1 OsHDAC1-overexpressing... 129 2e-027
gb|CF319851.1|CF319851 HD--10-I05.b1 OsHDAC1-overexpressing... 129 2e-027
gb|CF319852.1|CF319852 HD--10-I05.g1 OsHDAC1-overexpressing... 129 2e-027
gb|CV727924.1|CV727924 14Salt--06-F07.g1 Salt treated rice ... 129 2e-027
gb|AU066281.2|AU066281 AU066281 Rice shoot Oryza sativa (ja... 129 2e-027
gb|C93490.2|C93490 C93490 Rice callus Oryza sativa (japonic... 129 2e-027
dbj|AK062043.1| Oryza sativa (japonica cultivar-group) cDNA... 129 2e-027
ref|NM_194132.2| Oryza sativa (japonica cultivar-group), mRNA 129 2e-027
gb|CF297381.1|CF297381 30DGS--08-D13.b1 Rice leaf plasmid c... 127 9e-027
gb|AU070625.1|AU070625 AU070625 Rice shoot Oryza sativa (ja... 125 3e-026
gb|D38833.1|D38833 RICC1277A Rice callus Oryza sativa (japo... 123 1e-025
gb|C29122.1|C29122 C29122 Rice callus cDNA Oryza sativa (ja... 123 1e-025
gb|D28182.1|D28182 RICC0261A Rice callus Oryza sativa (japo... 123 1e-025
gb|AU093504.1|AU093504 AU093504 Rice callus Oryza sativa (j... 123 1e-025
gb|AU063645.2|AU063645 AU063645 Rice callus Oryza sativa (j... 123 1e-025
gb|C28067.2|C28067 C28067 Rice callus cDNA Oryza sativa (ja... 123 1e-025
gb|CA998263.1|CA998263 S234E_D02 Rice cold stress germinati... 121 5e-025
gb|CF299912.1|CF299912 7LEAF--04-B22.g1 Rice leaf plasmid c... 121 5e-025
gb|CF318792.1|CF318792 HD--09-B01.b1 OsHDAC1-overexpressing... 121 5e-025
gb|AU162063.1|AU162063 AU162063 Rice green shoot Oryza sati... 117 8e-024
gb|CF319374.1|CF319374 HD--09-N16.g1 OsHDAC1-overexpressing... 117 8e-024
gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 ... 117 8e-024
gb|AACV01007019.1| Oryza sativa (japonica cultivar-group) c... 117 8e-024
gb|AU056104.1|AU056104 AU056104 Oryza sativa mature leaf Ni... 115 3e-023
gb|C97800.1|C97800 C97800 Rice callus Oryza sativa (japonic... 113 1e-022
gb|AU063042.2|AU063042 AU063042 Rice callus Oryza sativa (j... 113 1e-022
gb|AU093503.1|AU093503 AU093503 Rice callus Oryza sativa (j... 111 5e-022
gb|AU164738.1|AU164738 AU164738 Rice cDNA from immature lea... 111 5e-022
gb|CV729619.1|CV729619 FLO--02-K24.g1 Rice flower lambda ph... 111 5e-022
gb|C25205.1|C25205 C25205 Rice shoot Oryza sativa (japonica... 107 8e-021
gb|CF291585.1|CF291585 14ROOT--02-B05.g1 Rice root plasmid ... 105 3e-020
gb|AU075587.1|AU075587 AU075587 Rice callus Oryza sativa (j... 100 2e-018
gb|AU088631.1|AU088631 AU088631 Rice panicle at ripening st... 98 8e-018
gb|AU184032.1|AU184032 AU184032 Rice root Oryza sativa (jap... 94 1e-016
gb|CF330750.1|CF330750 NACL--06-J15.g1 Rice callus plasmid ... 90 2e-015
gb|CX728497.1|CX728497 OSJNEf07O13.r OSJNEf Oryza sativa (j... 86 3e-014
gb|D48500.1|D48500 RICS14720A Rice green shoot Oryza sativa... 80 2e-012
gb|CF330749.1|CF330749 NACL--06-J15.b1 Rice callus plasmid ... 78 7e-012
gb|CV729618.1|CV729618 FLO--02-K24.b1 Rice flower lambda ph... 76 3e-011
gb|CV724149.1|CV724149 root--05-P24.g1 Rice root lambda pha... 74 1e-010
gb|AU163873.1|AU163873 AU163873 Rice panicle at ripening st... 66 3e-008
dbj|AP005244.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01015052.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|C97965.1|C97965 C97965 Rice callus Oryza sativa (japonic... 52 4e-004
gb|D38786.1|D38786 RICC0209A Rice callus Oryza sativa (japo... 50 0.002
>gb|D15919.1|D15919 RICC1528A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1528A, mRNA sequence
Length = 404
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 205 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 146
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 145 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 86
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 85 tggatccggcg 75
>gb|CB684946.1|CB684946 OSJNEf14P06.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14P06 5', mRNA sequence
Length = 775
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 235 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 176
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 175 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 116
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 115 tggatccggcg 105
>gb|CF293135.1|CF293135 30DGS--02-D09.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-D09, mRNA sequence
Length = 424
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 278 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 219
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 218 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 159
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 158 tggatccggcg 148
>dbj|AK058503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F08, full
insert sequence
Length = 757
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 217 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 158
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 157 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 98
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 97 tggatccggcg 87
>dbj|AK066154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056J04, full
insert sequence
Length = 683
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 251 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 192
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 191 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 132
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 131 tggatccggcg 121
>ref|XM_468863.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 551
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 242 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 183
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 182 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 123
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 122 tggatccggcg 112
>ref|XM_468864.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 404
Score = 180 bits (91), Expect = 7e-043
Identities = 121/131 (92%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccccttggcccccttgttctt 509
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 205 ctggatgttcatggccttcttgttggtctcaagctggctccccttggcgcccttggcctt 146
Query: 510 ctccaagttgcgctcgcgggccatcttggacttctggccgttgccaccgcccatggtgga 569
||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||
Sbjct: 145 ctccatgttgcgctcgcgggccatcctggacttctgcccgttgccgccgcccatcgtgga 86
Query: 570 tggatccggcg 580
|||||||||||
Sbjct: 85 tggatccggcg 75
>gb|AQ859974.1|AQ859974 nbeb0013L10f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0013L10f, DNA sequence
Length = 497
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 265 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 324
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 325 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 384
Query: 447 gcactg 452
||||||
Sbjct: 385 gcactg 390
Score = 69.9 bits (35), Expect = 2e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 81 tggaaaccacattactttcttatgtagagtaacataggacaggacgcatga 131
>gb|AZ046506.1|AZ046506 nbeb0092I07f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0092I07f, DNA
sequence
Length = 363
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 236 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 295
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 296 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 355
Query: 447 gcactg 452
||||||
Sbjct: 356 gcactg 361
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 102
>gb|AZ047667.1|AZ047667 nbeb0092G02f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0092G02f, DNA
sequence
Length = 451
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 255 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 196
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 195 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 136
Query: 447 gcactg 452
||||||
Sbjct: 135 gcactg 130
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 389
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete
sequence
Length = 90673
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 46307 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 46366
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 46367 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 46426
Query: 447 gcactg 452
||||||
Sbjct: 46427 gcactg 46432
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 89281 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 89340
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 89341 ttgccgccgcccatcgtggatggatccggcg 89371
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 46123 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 46173
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 89119 ctggatgttcatggccttcttgttggtctcaagctggctccc 89160
>gb|AACV01007023.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007023, whole
genome shotgun sequence
Length = 86671
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 9080 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 9021
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 9020 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 8961
Query: 447 gcactg 452
||||||
Sbjct: 8960 gcactg 8955
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9264 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 9214
>ref|NT_107184.1| Oryza sativa (japonica cultivar-group)
Length = 1122777
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 201339 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 201280
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 201279 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 201220
Query: 447 gcactg 452
||||||
Sbjct: 201219 gcactg 201214
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 158365 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 158306
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 158305 ttgccgccgcccatcgtggatggatccggcg 158275
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201523 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 201473
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 158527 ctggatgttcatggccttcttgttggtctcaagctggctccc 158486
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 5239675 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 5239616
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 5239615 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 5239556
Query: 447 gcactg 452
||||||
Sbjct: 5239555 gcactg 5239550
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 5206650 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 5206591
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 5206590 ttgccgccgcccatcgtggatggatccggcg 5206560
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5239859 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 5239809
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 5206812 ctggatgttcatggccttcttgttggtctcaagctggctccc 5206771
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 19290382 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 19290323
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 19290322 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 19290263
Query: 447 gcactg 452
||||||
Sbjct: 19290262 gcactg 19290257
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 19257357 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 19257298
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 19257297 ttgccgccgcccatcgtggatggatccggcg 19257267
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 19290566 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 19290516
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 19257519 ctggatgttcatggccttcttgttggtctcaagctggctccc 19257478
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 18428949 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 18428890
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 18428889 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 18428830
Query: 447 gcactg 452
||||||
Sbjct: 18428829 gcactg 18428824
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 18385975 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 18385916
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 18385915 ttgccgccgcccatcgtggatggatccggcg 18385885
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 18429133 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 18429083
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 18386137 ctggatgttcatggccttcttgttggtctcaagctggctccc 18386096
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 139 bits (70), Expect = 2e-030
Identities = 112/126 (88%)
Strand = Plus / Minus
Query: 327 ctttcacttcttcagatgggggaagcactggtacacgtctgtcttgggatgcttggcctc 386
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||
Sbjct: 18434908 ctttcatttcttgagatgggggaagcactggtacacatctgtctttggatgcttagcttc 18434849
Query: 387 ggcgtgctcccggcacttcacttcagtcgtggtacacatgaatgtttgcatgcacacttt 446
|| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 18434848 tgcatgctcccggcatttcacttcagatgtggtgcacatgaatgtttgcatacacacctt 18434789
Query: 447 gcactg 452
||||||
Sbjct: 18434788 gcactg 18434783
Score = 117 bits (59), Expect = 8e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 490 cccttggcccccttgttcttctccaagttgcgctcgcgggccatcttggacttctggccg 549
|||||||| |||||| |||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 18391934 cccttggcgcccttggccttctccatgttgcgctcgcgggccatcctggacttctgcccg 18391875
Query: 550 ttgccaccgcccatggtggatggatccggcg 580
||||| |||||||| ||||||||||||||||
Sbjct: 18391874 ttgccgccgcccatcgtggatggatccggcg 18391844
Score = 77.8 bits (39), Expect = 7e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 178 tggacaccacatcactttcttatgtaggttaacataggacaggacgcatga 228
|||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 18435092 tggaaaccacatcactttcttatgtagagtaacataggacaggacgcatga 18435042
Score = 67.9 bits (34), Expect = 7e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 450 ctggatgctcatggccttcttgttggtctcgagctggctccc 491
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 18392096 ctggatgttcatggccttcttgttggtctcaagctggctccc 18392055
>gb|D38874.1|D38874 RICC1813A Rice callus Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 360
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 243 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 184
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 183 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 124
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 123 ttcgacttctgcccattgccgccgcccat 95
>gb|D38891.1|D38891 RICC2069A Rice callus Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 362
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 254 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 195
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 194 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 135
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 134 ttcgacttctgcccattgccgccgcccat 106
>gb|D38916.1|D38916 RICC2472A Rice callus Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 346
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 177 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 118
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 117 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 58
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 57 ttcgacttctgcccattgccgccgcccat 29
>gb|D39577.1|D39577 RICS1051A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 380
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 241 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 182
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 181 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 122
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 121 ttcgacttctgcccattgccgccgcccat 93
>gb|D46113.1|D46113 RICS10561A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 416
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 238 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 179
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 178 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 119
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 118 ttcgacttctgcccattgccgccgcccat 90
>gb|D49040.1|D49040 RICS15660A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 478
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 244 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 185
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 184 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 125
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 124 ttcgacttctgcccattgccgccgcccat 96
>gb|C19126.1|C19126 C19126 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10001_1A, mRNA sequence
Length = 414
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 181 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 122
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 121 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 62
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 61 ttcgacttctgcccattgccgccgcccat 33
>gb|C27766.1|C27766 C27766 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52814_1A, mRNA sequence
Length = 367
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 235 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 176
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 175 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 116
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 115 ttcgacttctgcccattgccgccgcccat 87
>gb|C28478.1|C28478 C28478 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61245_1A, mRNA sequence
Length = 431
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 223 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 164
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 163 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 104
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 103 ttcgacttctgcccattgccgccgcccat 75
>gb|C73447.1|C73447 C73447 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4138_1A, mRNA sequence
Length = 359
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 244 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 185
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 184 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 125
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 124 ttcgacttctgcccattgccgccgcccat 96
>gb|C73848.1|C73848 C73848 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20803_1A, mRNA sequence
Length = 388
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 195 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 136
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 135 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 76
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 75 ttcgacttctgcccattgccgccgcccat 47
>gb|C74188.1|C74188 C74188 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30610_1A, mRNA sequence
Length = 453
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 176 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 117
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 116 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 57
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 56 ttcgacttctgcccattgccgccgcccat 28
>gb|C97299.1|C97299 C97299 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53873_2A, mRNA sequence
Length = 391
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 228 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 169
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 168 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 109
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 108 ttcgacttctgcccattgccgccgcccat 80
>gb|AU057606.1|AU057606 AU057606 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21611_2Z, mRNA sequence
Length = 560
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 219 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 160
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 159 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 100
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 99 ttcgacttctgcccattgccgccgcccat 71
>gb|AU057759.1|AU057759 AU057759 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S21761_1A, mRNA sequence
Length = 548
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 224 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 165
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 164 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 105
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 104 ttcgacttctgcccattgccgccgcccat 76
>gb|AU063218.1|AU063218 AU063218 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53712_1A, mRNA sequence
Length = 292
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 236 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 177
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 176 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 117
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 116 ttcgacttctgcccattgccgccgcccat 88
>gb|AU066168.1|AU066168 AU066168 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5392_1A, mRNA sequence
Length = 347
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 241 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 182
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 181 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 122
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 121 ttcgacttctgcccattgccgccgcccat 93
>gb|AU070698.1|AU070698 AU070698 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10116_1A, mRNA sequence
Length = 463
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 164 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 105
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 104 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 45
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 44 ttcgacttctgcccattgccgccgcccat 16
>gb|AU070782.1|AU070782 AU070782 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10235_1A, mRNA sequence
Length = 462
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 164 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 105
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 104 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 45
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 44 ttcgacttctgcccattgccgccgcccat 16
>gb|AU071252.1|AU071252 AU071252 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10965_1A, mRNA sequence
Length = 591
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 238 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 179
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 178 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 119
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 118 ttcgacttctgcccattgccgccgcccat 90
>gb|AU066010.2|AU066010 AU066010 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16684_2A, mRNA sequence
Length = 462
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 220 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 161
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 160 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 101
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 100 ttcgacttctgcccattgccgccgcccat 72
>gb|AU089749.1|AU089749 AU089749 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14720, mRNA sequence
Length = 599
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 244 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 185
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 184 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 125
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 124 ttcgacttctgcccattgccgccgcccat 96
>gb|AU091792.1|AU091792 AU091792 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53365, mRNA sequence
Length = 448
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 241 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 182
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 181 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 122
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 121 ttcgacttctgcccattgccgccgcccat 93
>gb|AU092977.1|AU092977 AU092977 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61245, mRNA sequence
Length = 529
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 222 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 163
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 162 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 103
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 102 ttcgacttctgcccattgccgccgcccat 74
>gb|AU066344.2|AU066344 AU066344 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6568, mRNA sequence
Length = 404
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 244 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 185
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 184 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 125
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 124 ttcgacttctgcccattgccgccgcccat 96
>gb|AU161116.1|AU161116 AU161116 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53506, mRNA sequence
Length = 373
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 243 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 184
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 183 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 124
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 123 ttcgacttctgcccattgccgccgcccat 95
>gb|AU164737.1|AU164737 AU164737 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61057, mRNA sequence
Length = 475
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 243 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 184
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 183 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 124
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 123 ttcgacttctgcccattgccgccgcccat 95
>gb|AU164741.1|AU164741 AU164741 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61069, mRNA sequence
Length = 469
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 240 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 181
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 180 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 121
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 120 ttcgacttctgcccattgccgccgcccat 92
>gb|AU165708.1|AU165708 AU165708 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4138, mRNA sequence
Length = 584
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 242 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 183
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 182 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 123
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 122 ttcgacttctgcccattgccgccgcccat 94
>gb|AU063651.2|AU063651 AU063651 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C63431, mRNA sequence
Length = 565
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 241 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 182
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 181 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 122
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 121 ttcgacttctgcccattgccgccgcccat 93
>gb|AU184031.1|AU184031 AU184031 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0408, mRNA sequence
Length = 443
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 242 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 183
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 182 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 123
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 122 ttcgacttctgcccattgccgccgcccat 94
>gb|CA998264.1|CA998264 S234E_D03 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 341
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 235 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 176
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 175 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 116
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 115 ttcgacttctgcccattgccgccgcccat 87
>gb|CB685006.1|CB685006 OSJNEf15A24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15A24 5', mRNA sequence
Length = 539
Score = 129 bits (65), Expect = 2e-027
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 415 gtggtacacatgaatgtttgcatgcacactttgcactggatgctcatggccttcttgttg 474
||||| || ||||| || |||||||| | |||||||||||| |||||||||||||||||
Sbjct: 213 gtggtgcagatgaaagtctgcatgcatatcttgcactggatgttcatggccttcttgttg 154
Query: 475 gtctcgagctggctccccttggcccccttgttcttctccaagttgcgctcgcgggccatc 534
| ||| ||||||||||||||||| |||||||||||||||| ||| | ||| | ||||||
Sbjct: 153 gcctcaagctggctccccttggcgcccttgttcttctccatgttcctctccctcgccatc 94
Query: 535 ttggacttctggccgttgccaccgcccat 563
|| |||||||| || ||||| ||||||||
Sbjct: 93 ttcgacttctgcccattgccgccgcccat 65
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 953,411
Number of Sequences: 438736
Number of extensions: 953411
Number of successful extensions: 5376
Number of sequences better than 0.5: 113
Number of HSP's better than 0.5 without gapping: 112
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5146
Number of HSP's gapped (non-prelim): 229
length of query: 708
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 687
effective length of database: 2,791,206,460
effective search space: 1917558838020
effective search space used: 1917558838020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)