BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA... 472 e-130
dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA... 464 e-128
dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA... 456 e-126
dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA... 456 e-126
dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA... 456 e-126
gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA ... 281 3e-073
gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (j... 131 6e-028
gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|NT_080056.2| Oryza sativa (japonica cultivar-group) 100 2e-018
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromoso... 100 2e-018
emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromoso... 100 2e-018
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressin... 98 8e-018
dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA... 98 8e-018
dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA... 98 8e-018
ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Oz... 98 8e-018
gb|CB663612.1|CB663612 OSJNEd08M21.f OSJNEd Oryza sativa (j... 96 3e-017
dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (j... 88 8e-015
gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (j... 86 3e-014
gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japo... 84 1e-013
gb|AU065539.1|AU065539 AU065539 Rice callus Oryza sativa (j... 84 1e-013
gb|AQ913186.1|AQ913186 nbeb0040D15f CUGI Rice BAC Library (... 70 2e-009
gb|D23445.1|D23445 RICC2825A Rice callus Oryza sativa (japo... 68 7e-009
gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 64 1e-007
dbj|AP000836.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|C26538.1|C26538 C26538 Rice callus cDNA Oryza sativa (ja... 58 7e-006
gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (... 54 1e-004
gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|C98487.1|C98487 C98487 Rice panicle at flowering stage O... 44 0.10
gb|CB674255.1|CB674255 OSJNEe09D12.r OSJNEe Oryza sativa (j... 44 0.10
gb|CB677346.1|CB677346 OSJNEe14C23.f OSJNEe Oryza sativa (j... 44 0.10
dbj|AK101842.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
gb|AY323483.1| Oryza sativa (japonica cultivar-group) zwill... 44 0.10
dbj|AP006447.4| Oryza sativa (japonica cultivar-group) geno... 44 0.10
dbj|AP006465.4| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01015684.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
ref|XM_477327.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.10
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AU068543.1|AU068543 AU068543 Rice callus Oryza sativa (j... 42 0.40
gb|CF307494.1|CF307494 HDA1--06-N22.g1 OsHDAC1-overexpressi... 42 0.40
gb|AQ689172.1|AQ689172 nbxb0079E19r CUGI Rice BAC Library O... 40 1.6
gb|AACV01001467.1| Oryza sativa (japonica cultivar-group) c... 40 1.6
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.6
gb|AC167227.1| Oryza sativa (japonica cultivar-group) chrom... 40 1.6
gb|CL522553.1|CL522553 SAM6B01 Flanking Sequence Tag of Ory... 38 6.3
emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC O... 38 6.3
dbj|AP004188.3| Oryza sativa (japonica cultivar-group) geno... 38 6.3
ref|NT_107156.1| Oryza sativa (japonica cultivar-group) 38 6.3
gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) c... 38 6.3
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 38 6.3
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.3
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.3
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 38 6.3
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 38 6.3
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 38 6.3
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full
insert sequence
Length = 3385
Score = 472 bits (238), Expect = e-130
Identities = 564/672 (83%), Gaps = 3/672 (0%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
|||||| || |||||||| ||||||| ||||| ||||||||||| | ||||| |||||
Sbjct: 2116 gtacctactcaatttgctattgaagataaatgccaagcttggtggaataaactcattgct 2175
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||| |||||||||| | |||||||| | ||| ||| | ||| ||||||||||||||
Sbjct: 2176 gcaaattgaagcatccccttcaatacctcttgtatcgaagacacctaccatcatcttagg 2235
Query: 121 tatggatgtttcacatggtcatccaggacaa---gatagaccttcggttgcagcggtggt 177
||||||||| ||||| ||||| ||||||||| ||||||||||| |||| ||||||||
Sbjct: 2236 tatggatgtgtcacacggtcaaccaggacaatctgatagaccttccattgctgcggtggt 2295
Query: 178 tagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgc 237
||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| || || |
Sbjct: 2296 tagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactcagtcacc 2355
Query: 238 cagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcat 297
| |||||||||||||| || ||||||||||| || || ||||| ||||||||||||||
Sbjct: 2356 taagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatggcctcat 2415
Query: 298 ccgggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataat 357
|||||||| ||||| |||||||||||||| |||||||| || ||||| || || | ||
Sbjct: 2416 tcgggaatcgctgattgacttctacactagttctggaaaacggaaaccggatcatgttat 2475
Query: 358 tattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctgga 417
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 2476 cgttttcagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttga 2535
Query: 418 tcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgat 477
||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 2536 tcagatcattgaggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgat 2595
Query: 478 tgttgctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttct 537
||||||||| ||||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 2596 tgttgctcagaagaatcatcataccaaattttttcagtctggatctccagataatgttcc 2655
Query: 538 tcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtg 597
|| || ||||| ||||| | |||| |||||||| | ||| | ||||||||||||||
Sbjct: 2656 gccaggtactgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtg 2715
Query: 598 tgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacga 657
||| |||||||| ||||||||||| || ||||| || || ||||||||||||||||| ||
Sbjct: 2716 tgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcacgatga 2775
Query: 658 gataggtttctc 669
||||||||||||
Sbjct: 2776 gataggtttctc 2787
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full
insert sequence
Length = 1885
Score = 464 bits (234), Expect = e-128
Identities = 563/672 (83%), Gaps = 3/672 (0%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
|||||| || |||||||| ||||||| ||||| ||||||||||| | ||||| |||||
Sbjct: 664 gtacctactcaatttgctattgaagataaatgccaagcttggtggaataaactcattgct 723
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||| |||||||||| | |||||||| | ||| ||| | ||| ||||||||||||||
Sbjct: 724 gcaaattgaagcatccccttcaatacctcttgtatcgaagacacctaccatcatcttagg 783
Query: 121 tatggatgtttcacatggtcatccaggacaa---gatagaccttcggttgcagcggtggt 177
||||||||| ||||| ||||| ||||||||| ||||||||||| |||| ||||||||
Sbjct: 784 tatggatgtgtcacacggtcaaccaggacaatctgatagaccttccattgctgcggtggt 843
Query: 178 tagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgc 237
||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| || || |
Sbjct: 844 tagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactcagtcacc 903
Query: 238 cagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcat 297
| |||||||||||||| || ||||||||||| || || ||||| ||||||||||||||
Sbjct: 904 taagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatggcctcat 963
Query: 298 ccgggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataat 357
|||||||| ||||| |||||||||||||| |||||||| || ||||| || || | ||
Sbjct: 964 tcgggaatcgctgattgacttctacactagttctggaaaacggaaaccggatcatgttat 1023
Query: 358 tattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctgga 417
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 1024 cgttttcagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttga 1083
Query: 418 tcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgat 477
||||||||| |||||||| || ||||| |||||||||||||| || |||||||| |||||
Sbjct: 1084 tcagatcattgaggcatgcaaatttctcgatgagaagtggtcgccaaagttcacagtgat 1143
Query: 478 tgttgctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttct 537
||||||||| ||||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 1144 tgttgctcagaagaatcatcataccaaattttttcagtctggatctccagataatgttcc 1203
Query: 538 tcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtg 597
|| || ||||| ||||| | |||| |||||||| | ||| | ||||||||||||||
Sbjct: 1204 gccaggtactgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtg 1263
Query: 598 tgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacga 657
||| |||||||| ||||||||||| || ||||| || || ||||||||||||||||| ||
Sbjct: 1264 tgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcacgatga 1323
Query: 658 gataggtttctc 669
||||||||||||
Sbjct: 1324 gataggtttctc 1335
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full
insert sequence
Length = 1196
Score = 456 bits (230), Expect = e-126
Identities = 541/644 (84%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 29 aatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaatacca 88
||||| ||||||||||| | ||||| ||||||||| |||||||||| | ||||||||
Sbjct: 3 aatgccaagcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacct 62
Query: 89 catgtgtcgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccagga 148
| ||| ||| | ||| ||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 63 cttgtatcgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccagga 122
Query: 149 caa---gatagaccttcggttgcagcggtggttagttctcgtcaatggcctcttatctct 205
||| ||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 123 caatctgatagaccttccattgctgcggtggttagctctcgccaatggcctctcatctct 182
Query: 206 agatatagagcatcagtgcacacccaatctgccagactagaaatgatgtcctcgttgttt 265
| ||| |||||||| |||||||| || || | | |||||||||||||| || ||||||
Sbjct: 183 aaatacagagcatcggtgcacactcagtcacctaagctagaaatgatgtcttccttgttt 242
Query: 266 aagccgcggggtactgatgatgatggcctcatccgggaatcactgatcgacttctacact 325
||||| || || ||||| |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 243 aagccacgaggaactgaagatgatggcctcattcgggaatcgctgattgacttctacact 302
Query: 326 agctctggaaagcgaaaaccagaacacataattattttcagggatggagtcagtgaaagt 385
|| |||||||| || ||||| || || | || |||||||||||||||| ||||||||
Sbjct: 303 agttctggaaaacggaaaccggatcatgttatcgttttcagggatggagttagtgaaagc 362
Query: 386 cagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgtaagtttctg 445
|||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 363 cagtttactcaggtcattaacattgagcttgatcagatcattgaggcatgcaaatttctc 422
Query: 446 gatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaag 505
||||||||||||||||| |||||||| |||||||||||||| ||||| || || |||||
Sbjct: 423 gatgagaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaa 482
Query: 506 ttctttcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtt 565
|| |||||| | | ||| ||||| ||||||| || || ||||| ||||| | ||||
Sbjct: 483 ttttttcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtg 542
Query: 566 tgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaaca 625
|||||||| | ||| | ||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 543 tgccatccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacg 602
Query: 626 aggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 603 aggccaacacattatcatgttctgcacgatgagataggtttctc 646
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full
insert sequence
Length = 3178
Score = 456 bits (230), Expect = e-126
Identities = 563/672 (83%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
|||||| || |||||||| ||||||| ||||| ||||||||||| | ||||| |||||
Sbjct: 1935 gtacctactcaatttgctattgaagataaatgccaagcttggtggaataaactcattgct 1994
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||| |||||||||| | |||||||| | ||| ||| | ||| ||||||||||||||
Sbjct: 1995 gcaaattgaagcatccccttcaatacctcttgtatcgaagacacctaccatcatcttagg 2054
Query: 121 tatggatgtttcacatggtcatccaggacaa---gatagaccttcggttgcagcggtggt 177
||||||||| ||||| ||||| ||||||||| ||||||||||| |||| ||||||||
Sbjct: 2055 tatggatgtgtcacacggtcaaccaggacaatctgatagaccttccattgctgcggtggt 2114
Query: 178 tagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacacccaatctgc 237
||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| || || |
Sbjct: 2115 tagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactcagtcacc 2174
Query: 238 cagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatggcctcat 297
| |||||||||||||| || ||||||||||| || || ||||| ||||||||||||||
Sbjct: 2175 taagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatggcctcat 2234
Query: 298 ccgggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataat 357
|||||||| ||||| |||||||||||||| |||||||| || ||||| || || | ||
Sbjct: 2235 tcgggaatcgctgattgacttctacactagttctggaaaacggaaaccggatcatgttat 2294
Query: 358 tattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctgga 417
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 2295 cgtttt-agggatggagttagtgaaagccagtttactcaggtcattaacattgagcttga 2353
Query: 418 tcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgat 477
||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 2354 tcagatcattgaggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgat 2413
Query: 478 tgttgctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttct 537
||||||||| ||||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 2414 tgttgctcagaagaatcatcataccaaattttttcagtctggatctccagataatgttcc 2473
Query: 538 tcctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtg 597
|| || ||||| ||||| | |||| |||||||| | ||| | ||||||||||||||
Sbjct: 2474 gccaggtactgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtg 2533
Query: 598 tgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacga 657
||| |||||||| ||||||||||| || ||||| || || ||||||||||||||||| ||
Sbjct: 2534 tgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcacgatga 2593
Query: 658 gataggtttctc 669
||||||||||||
Sbjct: 2594 gataggtttctc 2605
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full
insert sequence
Length = 1196
Score = 456 bits (230), Expect = e-126
Identities = 541/644 (84%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 29 aatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaatacca 88
||||| ||||||||||| | ||||| ||||||||| |||||||||| | ||||||||
Sbjct: 3 aatgccaagcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacct 62
Query: 89 catgtgtcgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccagga 148
| ||| ||| | ||| ||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 63 cttgtatcgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccagga 122
Query: 149 caa---gatagaccttcggttgcagcggtggttagttctcgtcaatggcctcttatctct 205
||| ||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 123 caatctgatagaccttccattgctgcggtggttagctctcgccaatggcctctcatctct 182
Query: 206 agatatagagcatcagtgcacacccaatctgccagactagaaatgatgtcctcgttgttt 265
| ||| |||||||| |||||||| || || | | |||||||||||||| || ||||||
Sbjct: 183 aaatacagagcatcggtgcacactcagtcacctaagctagaaatgatgtcttccttgttt 242
Query: 266 aagccgcggggtactgatgatgatggcctcatccgggaatcactgatcgacttctacact 325
||||| || || ||||| |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 243 aagccacgaggaactgaagatgatggcctcattcgggaatcgctgattgacttctacact 302
Query: 326 agctctggaaagcgaaaaccagaacacataattattttcagggatggagtcagtgaaagt 385
|| |||||||| || ||||| || || | || |||||||||||||||| ||||||||
Sbjct: 303 agttctggaaaacggaaaccggatcatgttatcgttttcagggatggagttagtgaaagc 362
Query: 386 cagtttacccaggtcatcaacattgagctggatcagatcatcgaggcatgtaagtttctg 445
|||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 363 cagtttactcaggtcattaacattgagcttgatcagatcattgaggcatgcaaatttctc 422
Query: 446 gatgagaagtggtcacccaagttcactgtgattgttgctcaaaagaaccaccacaccaag 505
||||||||||||||||| |||||||| |||||||||||||| ||||| || || |||||
Sbjct: 423 gatgagaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaa 482
Query: 506 ttctttcagacggcatcaccagacaatgttcttcctggaactgtggtggatagtaaagtt 565
|| |||||| | | ||| ||||| ||||||| || || ||||| ||||| | ||||
Sbjct: 483 ttttttcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtg 542
Query: 566 tgccatcctaagaacttcgacttctacatgtgtgcacatgctgggatgattggaacaaca 625
|||||||| | ||| | ||||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 543 tgccatccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacg 602
Query: 626 aggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 603 aggccaacacattatcatgttctgcacgatgagataggtttctc 646
>gb|CA755466.1|CA755466 BR030021000_PLATE_B11_82_092.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030021000_PLATE_B11_82_092.ab1 similar to ESTs
AU068544(C30430),C98487(E0325),D23445(C2825),, mRNA
sequence
Length = 634
Score = 281 bits (142), Expect = 3e-073
Identities = 313/370 (84%)
Strand = Plus / Plus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaaccagaacacataatta 359
||||||| ||||| |||||||||||||| |||||||| || ||||| || || | ||
Sbjct: 1 gggaatcgctgattgacttctacactagttctggaaaacggaaaccggatcatgttatcg 60
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 61 ttttcagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 120
Query: 420 agatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattg 479
||||||| |||||||| || ||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 121 agatcattgaggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattg 180
Query: 480 ttgctcaaaagaaccaccacaccaagttctttcagacggcatcaccagacaatgttcttc 539
||||||| ||||| || || ||||| || |||||| | | ||| ||||| ||||||| |
Sbjct: 181 ttgctcagaagaatcatcataccaaattttttcagtctggatctccagataatgttccgc 240
Query: 540 ctggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtg 599
| || ||||| ||||| | |||| |||||||| | ||| | ||||||||||||||||
Sbjct: 241 caggtactgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtg 300
Query: 600 cacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcacgacgaga 659
| |||||||| ||||||||||| || ||||| || || ||||||||||||||||| ||||
Sbjct: 301 ctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcacgatgaga 360
Query: 660 taggtttctc 669
||||||||||
Sbjct: 361 taggtttctc 370
>gb|CB663613.1|CB663613 OSJNEd08M21.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M21 3', mRNA sequence
Length = 814
Score = 131 bits (66), Expect = 6e-028
Identities = 171/206 (83%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacaccaagttctttcagacggcatca 523
|||||||| |||||||||||||| ||||| || || ||||| || |||||| | | |||
Sbjct: 804 aagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtctggatct 745
Query: 524 ccagacaatgttcttcctggaactgtggtggatagtaaagtttgccatcctaagaacttc 583
||||| ||||||| || || ||||| ||||| | |||| |||||||| | ||| |
Sbjct: 744 ccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaattat 685
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| |||||||| ||||||||||| || ||||| || || ||||||
Sbjct: 684 gacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcat 625
Query: 644 gttctgcacgacgagataggtttctc 669
||||||||||| ||||||||||||||
Sbjct: 624 gttctgcacgatgagataggtttctc 599
>gb|AACV01008615.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008615, whole
genome shotgun sequence
Length = 37475
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 13215 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 13156
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 13155 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 13096
Query: 292 cctcat 297
||||||
Sbjct: 13095 cctcat 13090
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 12797 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 12738
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 12737 agatcattgagg 12726
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 12491 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 12432
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 12431 agaatcatcataccaaattttttcagtctggatctccagataatgttc 12384
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 13485 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 13426
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 13425 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 13370
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 12104 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 12052
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 12985 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 12940
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 12236 gacttctacatgtgtgctcatgctggaatgattg 12203
>ref|NT_080056.2| Oryza sativa (japonica cultivar-group)
Length = 253647
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 123369 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 123310
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 123309 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 123250
Query: 292 cctcat 297
||||||
Sbjct: 123249 cctcat 123244
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 122951 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 122892
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 122891 agatcattgagg 122880
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 122645 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 122586
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 122585 agaatcatcataccaaattttttcagtctggatctccagataatgttc 122538
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 123639 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 123580
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 123579 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 123524
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 122258 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 122206
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 123139 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 123094
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 122390 gacttctacatgtgtgctcatgctggaatgattg 122357
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021 genomic
scaffold, whole genome shotgun sequence
Length = 2817894
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 1473882 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 1473823
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 1473822 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 1473763
Query: 292 cctcat 297
||||||
Sbjct: 1473762 cctcat 1473757
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 1473464 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 1473405
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 1473404 agatcattgagg 1473393
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 1473158 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 1473099
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 1473098 agaatcatcataccaaattttttcagtctggatctccagataatgttc 1473051
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 1474152 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 1474093
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1474092 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 1474037
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 1472771 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 1472719
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1473652 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 1473607
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 1472903 gacttctacatgtgtgctcatgctggaatgattg 1472870
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 2959787 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 2959728
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 2959727 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 2959668
Query: 292 cctcat 297
||||||
Sbjct: 2959667 cctcat 2959662
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 2959369 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 2959310
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 2959309 agatcattgagg 2959298
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 2959063 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 2959004
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 2959003 agaatcatcataccaaattttttcagtctggatctccagataatgttc 2958956
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 2960057 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 2959998
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2959997 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 2959942
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 2958676 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 2958624
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 2959557 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 2959512
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 2958808 gacttctacatgtgtgctcatgctggaatgattg 2958775
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15,
complete sequence
Length = 130618
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 340 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 281
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 280 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 221
Query: 292 cctcat 297
||||||
Sbjct: 220 cctcat 215
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 610 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 551
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 550 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 495
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 110 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 65
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
complete sequence
Length = 127419
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 123369 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 123310
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 123309 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 123250
Query: 292 cctcat 297
||||||
Sbjct: 123249 cctcat 123244
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 122951 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 122892
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 122891 agatcattgagg 122880
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 122645 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 122586
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 122585 agaatcatcataccaaattttttcagtctggatctccagataatgttc 122538
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 123639 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 123580
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 123579 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 123524
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 122258 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 122206
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 123139 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 123094
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 122390 gacttctacatgtgtgctcatgctggaatgattg 122357
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 99.6 bits (50), Expect = 2e-018
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 3534074 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 3534015
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagccgcggggtactgatgatgatgg 291
|| | | |||||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 3534014 gtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatgg 3533955
Query: 292 cctcat 297
||||||
Sbjct: 3533954 cctcat 3533949
Score = 87.7 bits (44), Expect = 8e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 360 ttttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatc 419
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct: 3533656 tttttagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatc 3533597
Query: 420 agatcatcgagg 431
||||||| ||||
Sbjct: 3533596 agatcattgagg 3533585
Score = 87.7 bits (44), Expect = 8e-015
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 429 aggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctcaaa 488
||||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct: 3533350 aggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcaga 3533291
Query: 489 agaaccaccacaccaagttctttcagacggcatcaccagacaatgttc 536
|||| || || ||||| || |||||| | | ||| ||||| |||||||
Sbjct: 3533290 agaatcatcataccaaattttttcagtctggatctccagataatgttc 3533243
Score = 79.8 bits (40), Expect = 2e-012
Identities = 97/116 (83%)
Strand = Plus / Minus
Query: 36 agcttggtggtctgaactcgttgctgcaagttgaagcatcttcgtcaataccacatgtgt 95
|||||||||| | ||||| ||||||||| |||||||||| | |||||||| | ||| |
Sbjct: 3534344 agcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtat 3534285
Query: 96 cgcaagtacccaccatcatcttaggtatggatgtttcacatggtcatccaggacaa 151
|| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 3534284 cgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaa 3534229
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 617 ggaacaacaaggcccacccactatcatgttctgcacgacgagataggtttctc 669
||||| || ||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 3532963 ggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctc 3532911
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 3533844 gggaatcgctgattgacttctacactagttctggaaaacggaaacc 3533799
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| |||||||| |||||||
Sbjct: 3533095 gacttctacatgtgtgctcatgctggaatgattg 3533062
>gb|CF323377.1|CF323377 HDN--03-L03.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-L03, mRNA sequence
Length = 601
Score = 97.6 bits (49), Expect = 8e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct: 282 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctg 341
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
||||| || || |||||||| |||||||| || || || ||||| || ||||| || ||
Sbjct: 342 gatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactg 401
Query: 476 attgttgctcaaaagaa 492
|||||||| || |||||
Sbjct: 402 attgttgcacagaagaa 418
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 511 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 570
Query: 644 gttctgcacgacgagataggtttctctgc 672
| || || || |||||||| ||||||||
Sbjct: 571 atccttcatgatgagataggcttctctgc 599
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 152 gatagaccttcggttgcagcggtggttagttctcgtcaatggcctctt 199
|||| |||||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 75 gatataccttcaattgctgcggtcgttagttctcgtgaatggcctctt 122
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full
insert sequence
Length = 772
Score = 97.6 bits (49), Expect = 8e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct: 9 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctg 68
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
||||| || || |||||||| |||||||| || || || ||||| || ||||| || ||
Sbjct: 69 gatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactg 128
Query: 476 attgttgctcaaaagaa 492
|||||||| || |||||
Sbjct: 129 attgttgcacagaagaa 145
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 237 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 296
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 297 atccttcatgatgagataggcttctctgctgacga 331
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full
insert sequence
Length = 3047
Score = 97.6 bits (49), Expect = 8e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct: 2310 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctg 2369
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
||||| || || |||||||| |||||||| || || || ||||| || ||||| || ||
Sbjct: 2370 gatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactg 2429
Query: 476 attgttgctcaaaagaa 492
|||||||| || |||||
Sbjct: 2430 attgttgcacagaagaa 2446
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2538 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2597
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 2598 atccttcatgatgagataggcttctctgctgacga 2632
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 152 gatagaccttcggttgcagcggtggttagttctcgtcaatggcctctt 199
|||| |||||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 2103 gatataccttcaattgctgcggtcgttagttctcgtgaatggcctctt 2150
Score = 42.1 bits (21), Expect = 0.40
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||||||||| ||||||| |||| ||| ||||| ||||
Sbjct: 1971 aagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatc 2023
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA
Length = 2715
Score = 97.6 bits (49), Expect = 8e-018
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct: 2152 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctg 2211
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
||||| || || |||||||| |||||||| || || || ||||| || ||||| || ||
Sbjct: 2212 gatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactg 2271
Query: 476 attgttgctcaaaagaa 492
|||||||| || |||||
Sbjct: 2272 attgttgcacagaagaa 2288
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2380 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2439
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 2440 atccttcatgatgagataggcttctctgctgacga 2474
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 152 gatagaccttcggttgcagcggtggttagttctcgtcaatggcctctt 199
|||| |||||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 1945 gatataccttcaattgctgcggtcgttagttctcgtgaatggcctctt 1992
Score = 42.1 bits (21), Expect = 0.40
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||||||||| ||||||| |||| ||| ||||| ||||
Sbjct: 1813 aagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatc 1865
>gb|CB663612.1|CB663612 OSJNEd08M21.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08M21 5', mRNA sequence
Length = 846
Score = 95.6 bits (48), Expect = 3e-017
Identities = 125/151 (82%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
|||||| || |||||||| ||||||| ||||| ||||||||||| | ||||| |||||
Sbjct: 674 gtacctactcaatttgctattgaagataaatgccaagcttggtggaataaactcattgct 733
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatcttagg 120
|||| |||||||||| | |||||||| | ||| ||| | ||| |||||||||||| |
Sbjct: 734 gcaaattgaagcatccccttcaatacctcttgtatcgaagacacctaccatcatcttang 793
Query: 121 tatggatgtttcacatggtcatccaggacaa 151
||||||||| ||||| ||||| |||||||||
Sbjct: 794 tatggatgtgtcacacggtcaaccaggacaa 824
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full
insert sequence
Length = 3027
Score = 89.7 bits (45), Expect = 2e-015
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | ||||||||||||
Sbjct: 2300 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctg 2359
Query: 416 gatcagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtg 475
||||| || || |||||| | |||||||| || || || ||||| || ||||| || ||
Sbjct: 2360 gatcaaataattgaggcaggcaagtttcttgacgaaaactggtctccaaagtttacactg 2419
Query: 476 attgttgctcaaaagaa 492
|||||||| || |||||
Sbjct: 2420 attgttgcacagaagaa 2436
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 2528 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 2587
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 2588 atccttcatgatgagataggcttctctgctgacga 2622
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 152 gatagaccttcggttgcagcggtggttagttctcgtcaatggcctctt 199
|||| |||||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 2093 gatataccttcaattgctgcggtcgttagttctcgtgaatggcctctt 2140
Score = 42.1 bits (21), Expect = 0.40
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||||||||| ||||||| |||| ||| ||||| ||||
Sbjct: 1961 aagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatc 2013
>gb|CB646770.1|CB646770 OSJNEb09G16.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09G16 3', mRNA sequence
Length = 678
Score = 87.7 bits (44), Expect = 8e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatcagatc 424
|||||||| |||||||| || |||||||||||||| | ||||||||||||||||| ||
Sbjct: 678 agggatggggtcagtgagagccagtttacccaggtgttgaacattgagctggatcaaata 619
Query: 425 atcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgct 484
|| |||||||| |||||||| || || || ||||| || ||||| || ||||||||||
Sbjct: 618 attgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgca 559
Query: 485 caaaagaa 492
|| |||||
Sbjct: 558 cagaagaa 551
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 459 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 400
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 399 atccttcatgatgagataggcttctctgctgacga 365
>gb|CB646880.1|CB646880 OSJNEb09J04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09J04 3', mRNA sequence
Length = 776
Score = 85.7 bits (43), Expect = 3e-014
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 366 gggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatcagatca 425
||||||| |||||||| || |||||||||||||| | ||||||||||||||||| || |
Sbjct: 758 gggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatcaaataa 699
Query: 426 tcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgattgttgctc 485
| |||||||| |||||||| || || || ||||| || ||||| || |||||||||| |
Sbjct: 698 ttgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgcac 639
Query: 486 aaaagaa 492
| |||||
Sbjct: 638 agaagaa 632
Score = 77.8 bits (39), Expect = 7e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcat 643
||||||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 540 gacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcat 481
Query: 644 gttctgcacgacgagataggtttctctgcagacga 678
| || || || |||||||| |||||||| |||||
Sbjct: 480 atccttcatgatgagataggcttctctgctgacga 446
>gb|D23328.1|D23328 RICC2623A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2623_1A, mRNA sequence
Length = 276
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 593 atgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgttctgcac 652
|||||||| |||||||| ||||||||||| || ||||| || || |||||||||||||||
Sbjct: 1 atgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcac 60
Query: 653 gacgagataggttt 666
|| |||||||||||
Sbjct: 61 gatgagataggttt 74
>gb|AU065539.1|AU065539 AU065539 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2824_1A, mRNA sequence
Length = 448
Score = 83.8 bits (42), Expect = 1e-013
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||| | || |||||||||||||| | ||||||||||||
Sbjct: 212 attatcttcagggatggggtcagtnagagccagtttacccaggtgctgaacattgagctg 271
Query: 416 gatcagatcatcgaggcatgtaagtttct 444
||||| || || |||||||| ||||||||
Sbjct: 272 gatcaaataattgaggcatgcaagtttct 300
>gb|AQ913186.1|AQ913186 nbeb0040D15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0040D15f, DNA sequence
Length = 472
Score = 69.9 bits (35), Expect = 2e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 172 ggtggttagttctcgtcaatggcctcttatctctagatatagagcatcagtgcacaccca 231
||||||||| ||||| ||||||||||| ||||||| ||| |||||||| |||||||| ||
Sbjct: 379 ggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactca 320
Query: 232 atctgccagactagaaatgatgtcctcgttgtttaagcc 270
|| | |||||||||||||| || |||||||||||
Sbjct: 319 gtcacataagctagaaatgatgtcttccttgtttaagcc 281
Score = 44.1 bits (22), Expect = 0.10
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 300 gggaatcactgatcgacttctacactagctctggaaagcgaaaacc 345
||||||| ||||| | |||||||||||| |||||||| || |||||
Sbjct: 149 gggaatcgctgattggcttctacactagttctggaaaacggaaacc 104
>gb|D23445.1|D23445 RICC2825A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C2825_1A, mRNA sequence
Length = 275
Score = 67.9 bits (34), Expect = 7e-009
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 356 attattttcagggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctg 415
||||| ||||||||||| |||||||| || |||||||||||||| | |||||||||||
Sbjct: 204 attatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctn 263
Query: 416 gatca 420
|||||
Sbjct: 264 gatca 268
Score = 46.1 bits (23), Expect = 0.026
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 165 ttgcagcggtggttagttctcgtcaatggcctctt 199
|||| ||||| |||||||||||| |||||||||||
Sbjct: 10 ttgctgcggtcgttagttctcgtgaatggcctctt 44
>gb|AACV01000677.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000677, whole
genome shotgun sequence
Length = 43096
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 10468 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 10413
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 10037 gacttctacatgtgtgcgcacgctggaatgattg 10004
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 10959 gttagttctcgtgaatggcctctt 10936
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 9629814 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 9629759
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 9611867 ttctacatgtgtgctcatgctgggatgattg 9611837
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 9629383 gacttctacatgtgtgcgcacgctggaatgattg 9629350
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 9630305 gttagttctcgtgaatggcctctt 9630282
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 9613987 accattatcttaggcatggatgtttcccatgg 9613956
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 9629654 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 9629599
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 9611707 ttctacatgtgtgctcatgctgggatgattg 9611677
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 9629223 gacttctacatgtgtgcgcacgctggaatgattg 9629190
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 9630145 gttagttctcgtgaatggcctctt 9630122
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 9613827 accattatcttaggcatggatgtttcccatgg 9613796
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0038F12
Length = 190014
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 70035 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 69980
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 52088 ttctacatgtgtgctcatgctgggatgattg 52058
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 69604 gacttctacatgtgtgcgcacgctggaatgattg 69571
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 70526 gttagttctcgtgaatggcctctt 70503
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 54208 accattatcttaggcatggatgtttcccatgg 54177
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 9667724 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 9667669
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 9648678 ttctacatgtgtgctcatgctgggatgattg 9648648
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 9667293 gacttctacatgtgtgcgcacgctggaatgattg 9667260
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 9668215 gttagttctcgtgaatggcctctt 9668192
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 9650798 accattatcttaggcatggatgtttcccatgg 9650767
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 9667724 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 9667669
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 9648678 ttctacatgtgtgctcatgctgggatgattg 9648648
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 9667293 gacttctacatgtgtgcgcacgctggaatgattg 9667260
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 564 tttgccatcctaagaacttc 583
||||||||||||||||||||
Sbjct: 19622375 tttgccatcctaagaacttc 19622356
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 9668215 gttagttctcgtgaatggcctctt 9668192
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 9650798 accattatcttaggcatggatgtttcccatgg 9650767
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 365 agggatggagtcagtgaaagtcagtttacccaggtcatcaacattgagctggatca 420
|||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct: 9632032 agggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatca 9631977
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 9614085 ttctacatgtgtgctcatgctgggatgattg 9614055
Score = 44.1 bits (22), Expect = 0.10
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
||||||||||||||||| || ||||| |||||||
Sbjct: 9631601 gacttctacatgtgtgcgcacgctggaatgattg 9631568
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 9632523 gttagttctcgtgaatggcctctt 9632500
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 9616205 accattatcttaggcatggatgtttcccatgg 9616174
>gb|C26538.1|C26538 C26538 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12548_1A, mRNA sequence
Length = 458
Score = 58.0 bits (29), Expect = 7e-006
Identities = 112/136 (82%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 1 gtacctgcttaatttgctgatgaagatcaatgcaaagcttggtggtctgaactcgttgct 60
|||||| || |||||||| ||| ||| ||||| ||||||||||| | ||||| |||||
Sbjct: 317 gtacctactcaatttgctattgaggataaatgccaagcttggtgggataaactcattgct 376
Query: 61 gcaagttgaagcatcttcgtcaataccacatgtgtcgcaagtacccaccatcatctta-g 119
|||| |||||||||| | |||||||| | ||| ||| | | ||| |||||||||||| |
Sbjct: 377 gcaaattgaagcatc-ccttcaatacctcttgtatcg-aggcacctaccatcatcttagg 434
Query: 120 gtatggatgtttcaca 135
|||||||||| |||||
Sbjct: 435 gtatggatgtntcaca 450
>gb|AQ954566.1|AQ954566 nbeb0071M13r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071M13r, DNA
sequence
Length = 376
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 52 ttctacatgtgtgctcatgctgggatgattg 22
>gb|AACV01000673.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000673, whole
genome shotgun sequence
Length = 39857
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 35007 ttctacatgtgtgctcatgctgggatgattg 34977
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 37127 accattatcttaggcatggatgtttcccatgg 37096
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| ||||||||||||||||
Sbjct: 147514 ttctacatgtgtgctcatgctgggatgattg 147484
Score = 40.1 bits (20), Expect = 1.6
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 107 accatcatcttaggtatggatgtttcacatgg 138
||||| |||||||| ||||||||||| |||||
Sbjct: 149634 accattatcttaggcatggatgtttcccatgg 149603
>gb|C98487.1|C98487 C98487 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0325_6Z, mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.10
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctggga-tgattggaacaacaaggcccacccactatca 642
||||||||||| ||| | || ||||||| |||||||||| |||||||| || || |||||
Sbjct: 44 gacttctacatntgtccgcacgctgggaatgattggaactacaaggcctacacattatca 103
Query: 643 t 643
|
Sbjct: 104 t 104
>gb|CB674255.1|CB674255 OSJNEe09D12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09D12 3', mRNA sequence
Length = 824
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 788 aagttcacagtgatcattgctcaaaagaatcaccacac 751
>gb|CB677346.1|CB677346 OSJNEe14C23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe14C23 5', mRNA sequence
Length = 862
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 813 aagttcacagtgatcattgctcaaaagaatcaccacac 850
>dbj|AK101842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069G22, full
insert sequence
Length = 1211
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 477 aagttcacagtgatcattgctcaaaagaatcaccacac 514
>gb|AY323483.1| Oryza sativa (japonica cultivar-group) zwille pinhead-like protein
(ZP1) mRNA, complete cds
Length = 1407
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 651 aagttcacagtgatcattgctcaaaagaatcaccacac 688
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1100H02
Length = 128773
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 75851 aagttcacagtgatcattgctcaaaagaatcaccacac 75814
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1059D01
Length = 158792
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 1595 aagttcacagtgatcattgctcaaaagaatcaccacac 1558
>gb|AACV01015684.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015684, whole
genome shotgun sequence
Length = 18500
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 2729 aagttcacagtgatcattgctcaaaagaatcaccacac 2692
>ref|XM_477327.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2670
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 2215 aagttcacagtgatcattgctcaaaagaatcaccacac 2252
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 9449937 aagttcacagtgatcattgctcaaaagaatcaccacac 9449900
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 3394827 aagttcacagtgatcattgctcaaaagaatcaccacac 3394790
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 9448452 aagttcacagtgatcattgctcaaaagaatcaccacac 9448415
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 44.1 bits (22), Expect = 0.10
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacac 501
|||||||| ||||| ||||||||||||| ||||||||
Sbjct: 9493865 aagttcacagtgatcattgctcaaaagaatcaccacac 9493828
>gb|AU068543.1|AU068543 AU068543 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30430_11A, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.40
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||||||||| ||||||| |||| ||| ||||| ||||
Sbjct: 483 aagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatc 535
>gb|CF307494.1|CF307494 HDA1--06-N22.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-N22, mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.40
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 23 aagatcaatgcaaagcttggtggtctgaactcgttgctgcaagttgaagcatc 75
||||| ||||||||||||||||| ||||||| |||| ||| ||||| ||||
Sbjct: 473 aagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatc 525
>gb|AQ689172.1|AQ689172 nbxb0079E19r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0079E19r, DNA sequence
Length = 694
Score = 40.1 bits (20), Expect = 1.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 176 gttagttctcgtcaatggcctctt 199
|||||||||||| |||||||||||
Sbjct: 327 gttagttctcgtgaatggcctctt 304
>gb|AACV01001467.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001467, whole
genome shotgun sequence
Length = 11231
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 564 tttgccatcctaagaacttc 583
||||||||||||||||||||
Sbjct: 7842 tttgccatcctaagaacttc 7861
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 564 tttgccatcctaagaacttc 583
||||||||||||||||||||
Sbjct: 2997252 tttgccatcctaagaacttc 2997233
>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone
OSJNBb0026K11, complete sequence
Length = 129643
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 564 tttgccatcctaagaacttc 583
||||||||||||||||||||
Sbjct: 93949 tttgccatcctaagaacttc 93968
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 564 tttgccatcctaagaacttc 583
||||||||||||||||||||
Sbjct: 50532 tttgccatcctaagaacttc 50551
>gb|CL522553.1|CL522553 SAM6B01 Flanking Sequence Tag of Oryza sativa T-DNA insertion lines
Oryza sativa (japonica cultivar-group) genomic, DNA
sequence
Length = 52
Score = 38.2 bits (19), Expect = 6.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280 tgatgatgatggcctcatc 298
|||||||||||||||||||
Sbjct: 52 tgatgatgatggcctcatc 34
>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 122128
Score = 38.2 bits (19), Expect = 6.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 280 tgatgatgatggcctcatc 298
|||||||||||||||||||
Sbjct: 80692 tgatgatgatggcctcatc 80710
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1493_H11
Length = 106693
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 65017 tttcagggatggtgtcagtgaaggacagttt 64987
>ref|NT_107156.1| Oryza sativa (japonica cultivar-group)
Length = 368479
Score = 38.2 bits (19), Expect = 6.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280 tgatgatgatggcctcatc 298
|||||||||||||||||||
Sbjct: 287788 tgatgatgatggcctcatc 287770
>gb|AACV01005121.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005121, whole
genome shotgun sequence
Length = 43744
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 12254 tttcagggatggtgtcagtgaaggacagttt 12284
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 2515083 tttcagggatggtgtcagtgaaggacagttt 2515053
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 13781654 tttcagggatggtgtcagtgaaggacagttt 13781624
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 27234718 tttcagggatggtgtcagtgaaggacagttt 27234688
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 38.2 bits (19), Expect = 6.3
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 361 tttcagggatggagtcagtgaaagtcagttt 391
|||||||||||| ||||||||| | ||||||
Sbjct: 27350084 tttcagggatggtgtcagtgaaggacagttt 27350054
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 38.2 bits (19), Expect = 6.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280 tgatgatgatggcctcatc 298
|||||||||||||||||||
Sbjct: 3608736 tgatgatgatggcctcatc 3608718
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 38.2 bits (19), Expect = 6.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280 tgatgatgatggcctcatc 298
|||||||||||||||||||
Sbjct: 3608681 tgatgatgatggcctcatc 3608663
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 973,699
Number of Sequences: 438736
Number of extensions: 973699
Number of successful extensions: 4323
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3972
Number of HSP's gapped (non-prelim): 317
length of query: 715
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 694
effective length of database: 2,791,206,460
effective search space: 1937097283240
effective search space used: 1937097283240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)