BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.387
(908 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059871.1| Oryza sativa (japonica cultivar-group) cDNA... 295 2e-077
dbj|AK099355.1| Oryza sativa (japonica cultivar-group) cDNA... 295 2e-077
gb|AACV01005819.1| Oryza sativa (japonica cultivar-group) c... 147 1e-032
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 147 1e-032
gb|AC140005.2| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 147 1e-032
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 147 1e-032
dbj|D16223.1|RICCHT3 Oryza sativa (japonica cultivar-group)... 115 4e-023
dbj|AK061280.1| Oryza sativa (japonica cultivar-group) cDNA... 115 4e-023
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 115 4e-023
dbj|AP003685.3| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
gb|AACV01014964.1| Oryza sativa (japonica cultivar-group) c... 115 4e-023
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-023
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 115 4e-023
gb|AQ287446.1|AQ287446 nbxb0030E24f CUGI Rice BAC Library O... 107 1e-020
gb|CB672878.1|CB672878 OSJNEe07C10.r OSJNEe Oryza sativa (j... 107 1e-020
gb|CB684719.1|CB684719 OSJNEf14I06.f OSJNEf Oryza sativa (j... 107 1e-020
gb|CB684720.1|CB684720 OSJNEf14I06.r OSJNEf Oryza sativa (j... 107 1e-020
gb|CF323069.1|CF323069 HDN--02-N11.g1 OsHDAC1-overexpressin... 107 1e-020
gb|CF324345.1|CF324345 HDN--06-E15.g1 OsHDAC1-overexpressin... 107 1e-020
gb|CF326349.1|CF326349 JMT1--05-N01.g1 AtJMT-overexpressing... 107 1e-020
dbj|D16221.1|RICCHT1 Oryza sativa (japonica cultivar-group)... 107 1e-020
dbj|AK061042.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
dbj|AK099339.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
dbj|AK104020.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
dbj|AK105798.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
gb|AACV01014965.1| Oryza sativa (japonica cultivar-group) c... 107 1e-020
emb|X56063.1|OSENDO O.sativa mRNA for endochitinase 107 1e-020
gb|AU097550.1|AU097550 AU097550 Rice shoot Oryza sativa (ja... 100 3e-018
gb|C27564.1|C27564 C27564 Rice callus cDNA Oryza sativa (ja... 98 1e-017
gb|AY378172.1| Oryza sativa (japonica cultivar-group) OsmCh... 94 2e-016
gb|BP185058.1|BP185058 BP185058 pNS rice panicle cDNA, flow... 90 2e-015
dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA... 90 2e-015
gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11... 90 2e-015
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 90 2e-015
gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 ... 90 2e-015
gb|AACV01006925.1| Oryza sativa (japonica cultivar-group) c... 90 2e-015
gb|AACV01022031.1| Oryza sativa (japonica cultivar-group) c... 90 2e-015
ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chi... 90 2e-015
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 90 2e-015
ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA 90 2e-015
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 90 2e-015
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 90 2e-015
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 90 2e-015
gb|AC132492.3| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
gb|AACV01012113.1| Oryza sativa (japonica cultivar-group) c... 88 1e-014
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 88 1e-014
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 88 1e-014
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 88 1e-014
gb|AACV01022034.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
gb|C98575.1|C98575 C98575 Rice panicle at flowering stage O... 82 6e-013
ref|NM_197598.1| Oryza sativa (japonica cultivar-group) put... 82 6e-013
gb|C72797.1|C72797 C72797 Rice panicle at flowering stage O... 70 2e-009
gb|AU077767.1|AU077767 AU077767 Rice cDNA from young root O... 62 6e-007
gb|CA756422.1|CA756422 BR030042000_PLATE_B01_2_010.ab1 OA O... 50 0.002
dbj|D16222.1|RICCHT2 Oryza sativa (japonica cultivar-group)... 50 0.002
dbj|AK101475.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK108949.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK110261.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC137616.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01010846.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
emb|X56787.1|OSLMRNAC O.sativa L. mRNA for endochitinase 50 0.002
gb|AU082109.1|AU082109 AU082109 Rice panicle at flowering s... 44 0.13
gb|AU082112.1|AU082112 AU082112 Rice panicle at flowering s... 44 0.13
gb|CF311469.1|CF311469 ABF--06-L04.g1 ABF3-overexpressing t... 44 0.13
dbj|AB096140.1| Oryza sativa (japonica cultivar-group) chia... 44 0.13
dbj|AK071013.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AK104242.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
dbj|AK104426.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.13
gb|AACV01010039.1| Oryza sativa (japonica cultivar-group) c... 44 0.13
ref|XM_473013.1| Oryza sativa (japonica cultivar-group), p... 44 0.13
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 44 0.13
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromoso... 44 0.13
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
>dbj|AK059871.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E11, full
insert sequence
Length = 1086
Score = 295 bits (149), Expect = 2e-077
Identities = 466/573 (81%), Gaps = 9/573 (1%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 830 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 771
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 770 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 720
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 719 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 660
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 659 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 600
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 599 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 540
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 539 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 480
Query: 685 ggcgagcctgtagttgtacttatgagttagctgtatgggtcctcgtccatagtagggtgg 744
||| ||| |||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 479 ggctagctggtagttgtacttatgagtaagctgtatgggtcctcggccgtagtagggcgg 420
Query: 745 gtccgtctgtttctgttccttcacccggcagtatccccaggcaaacggtccatccggagc 804
||||| | | | || |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 419 gtccgacggcgtgatctcgttcacccggcagtatccccaagcaaagggtccatcaggagc 360
Query: 805 agtcgcccatccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccg 864
||| ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct: 359 agttgcccatccacctgtagtttcgtgggaggtctggccaaagaaagcggcgagctcgcg 300
Query: 865 cctgcgcgtctgctcgtcgccggtggtgccgaa 897
|| |||||| | |||| |||||| ||||||||
Sbjct: 299 ccggcgcgtttcgtcgttgccggtcgtgccgaa 267
>dbj|AK099355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044P19, full
insert sequence
Length = 1097
Score = 295 bits (149), Expect = 2e-077
Identities = 466/573 (81%), Gaps = 9/573 (1%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 827 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 768
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 767 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 717
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 716 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 657
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 656 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 597
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 596 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 537
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 536 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 477
Query: 685 ggcgagcctgtagttgtacttatgagttagctgtatgggtcctcgtccatagtagggtgg 744
||| ||| |||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct: 476 ggctagctggtagttgtacttatgagtaagctgtatgggtcctcggccgtagtagggcgg 417
Query: 745 gtccgtctgtttctgttccttcacccggcagtatccccaggcaaacggtccatccggagc 804
||||| | | | || |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 416 gtccgacggcgtgatctcgttcacccggcagtatccccaagcaaagggtccatcaggagc 357
Query: 805 agtcgcccatccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccg 864
||| ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct: 356 agttgcccatccacctgtagtttcgtgggaggtctggccaaagaaagcggcgagctcgcg 297
Query: 865 cctgcgcgtctgctcgtcgccggtggtgccgaa 897
|| |||||| | |||| |||||| ||||||||
Sbjct: 296 ccggcgcgtttcgtcgttgccggtcgtgccgaa 264
>gb|AACV01005819.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005819, whole
genome shotgun sequence
Length = 10245
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Plus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 7946 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 8005
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 8006 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 8056
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 8057 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 8116
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 8117 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 8176
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 8177 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 8236
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 8237 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 8296
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 8297 ggctagctggtagttgtactta 8318
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 8475 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 8534
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 8535 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 8587
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 8694 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 8753
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 8754 ccggtcgtgccgaa 8767
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 254430 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 254371
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 254370 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 254320
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 254319 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 254260
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 254259 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 254200
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 254199 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 254140
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 254139 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 254080
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 254079 ggctagctggtagttgtactta 254058
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 253901 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 253842
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 253841 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 253789
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 253682 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 253623
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 253622 ccggtcgtgccgaa 253609
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
complete sequence
Length = 138054
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 66829 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 66770
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 66769 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 66719
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 66718 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 66659
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 66658 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 66599
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 66598 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 66539
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 66538 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 66479
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 66478 ggctagctggtagttgtactta 66457
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 66300 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 66241
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 66240 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 66188
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 66081 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 66022
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 66021 ccggtcgtgccgaa 66008
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 1869635 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 1869576
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1869575 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 1869525
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 1869524 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 1869465
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 1869464 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 1869405
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 1869404 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 1869345
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 1869344 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 1869285
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 1869284 ggctagctggtagttgtactta 1869263
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 1869106 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 1869047
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 1869046 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 1868994
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 1868887 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 1868828
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 1868827 ccggtcgtgccgaa 1868814
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 2061997 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 2061938
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 2061937 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 2061887
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 2061886 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 2061827
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 2061826 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 2061767
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 2061766 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 2061707
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 2061706 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 2061647
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 2061646 ggctagctggtagttgtactta 2061625
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17937098 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 17937046
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 2061468 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 2061409
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 2061408 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 2061356
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 2061249 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 2061190
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 2061189 ccggtcgtgccgaa 2061176
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 1841965 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 1841906
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1841905 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 1841855
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 1841854 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 1841795
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 1841794 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 1841735
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 1841734 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 1841675
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 1841674 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 1841615
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 1841614 ggctagctggtagttgtactta 1841593
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17197430 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 17197378
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 1841436 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 1841377
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 1841376 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 1841324
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 1841217 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 1841158
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 1841157 ccggtcgtgccgaa 1841144
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 17197136 gtcgcccacccgccggtggtctcgtgggacgtctg 17197102
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 147 bits (74), Expect = 1e-032
Identities = 304/382 (79%), Gaps = 9/382 (2%)
Strand = Plus / Minus
Query: 325 tcctccgtaaggcttctggctcccgcatgccatgttgtccccgtaccccactccgagcat 384
||||||||| ||||||||| || ||| || ||||| || ||||| || || | || |||
Sbjct: 1841967 tcctccgtagggcttctggtccctgcaggctatgttatctccgtatcctacgcggaacat 1841908
Query: 385 accgcagtacctcttgtagtagccgacccggtccttggcggctttggcgccgtcggtgga 444
|||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1841907 gtcgcagtacctcttgtagtagccgacccggtcctt---------ggcgttgtcggtgga 1841857
Query: 445 gcggtcctcgccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggg 504
| | ||| |||||||||| ||| |||||||||||||| |||| || |||||| |||||
Sbjct: 1841856 gtagcccttgccgcactcttcaccgccgttgatgatgttggtggccatgccgtagccggg 1841797
Query: 505 gagcctccccgcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtg 564
||||||||| | | ||||| | |||| ||| |||| | | ||| || ||| ||||
Sbjct: 1841796 gagcctcccggagctacggtcatcgccggacggcgtccactggttggtgattacgtcgtg 1841737
Query: 565 gcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaaggctac 624
|||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct: 1841736 gcacgacggcttgggtgactgcgccgtcatccagaaccagatggccgtcctgaacgccac 1841677
Query: 625 cacggggtctctcgccaccaggtccgggtcgcccaccaggttcaggttcagcgcttgccc 684
||||||||| || | ||||||||| |||| | |||||||| ||| || ||| | |||
Sbjct: 1841676 cacggggtcgcttgacaccaggtcggggttgttcaccaggtccagacccaacgcgtcccc 1841617
Query: 685 ggcgagcctgtagttgtactta 706
||| ||| |||||||||||||
Sbjct: 1841616 ggctagctggtagttgtactta 1841595
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17203861 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 17203809
Score = 89.7 bits (45), Expect = 2e-015
Identities = 96/113 (84%)
Strand = Plus / Minus
Query: 707 tgagttagctgtatgggtcctcgtccatagtagggtgggtccgtctgtttctgttccttc 766
||||| ||||||||||||||||| || |||||||| ||||||| | | | || |||
Sbjct: 1841438 tgagtaagctgtatgggtcctcggccgtagtagggcgggtccgacggcgtgatctcgttc 1841379
Query: 767 acccggcagtatccccaggcaaacggtccatccggagcagtcgcccatccacc 819
||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 1841378 acccggcagtatccccaagcaaagggtccatcaggagcagttgcccatccacc 1841326
Score = 67.9 bits (34), Expect = 9e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 824 gtttcgtgggacgtctggccgaagaaggcggcgagctcccgcctgcgcgtctgctcgtcg 883
||||||||||| |||||||| ||||| ||||||||||| |||| |||||| | |||| |
Sbjct: 1841219 gtttcgtgggaggtctggccaaagaaagcggcgagctcgcgccggcgcgtttcgtcgttg 1841160
Query: 884 ccggtggtgccgaa 897
||||| ||||||||
Sbjct: 1841159 ccggtcgtgccgaa 1841146
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 17203567 gtcgcccacccgccggtggtctcgtgggacgtctg 17203533
>dbj|D16223.1|RICCHT3 Oryza sativa (japonica cultivar-group) Cht-3 gene for endochitinase,
complete cds
Length = 2808
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 2671 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 2612
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 2611 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 2552
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2551 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 2506
>dbj|AK061280.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F06, full
insert sequence
Length = 1169
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 916 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 857
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 856 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 797
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 796 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 751
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 9590 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 9531
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 9530 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 9471
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9470 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 9425
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 13103 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 13044
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 13043 gtcttgaagg 13034
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0548E04
Length = 138037
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 118824 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 118765
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 118764 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 118705
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 118704 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 118659
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 122337 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 122278
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 122277 gtcttgaagg 122268
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 9590 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 9531
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 9530 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 9471
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9470 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 9425
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 13103 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 13044
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 13043 gtcttgaagg 13034
>gb|AACV01014964.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014964, whole
genome shotgun sequence
Length = 4179
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Plus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 1142 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 1201
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 1202 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 1261
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1262 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 1307
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 11703218 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 11703159
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 11703158 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 11703099
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11703098 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 11703053
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 11707573 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 11707514
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 11707513 gtcttgaagg 11707504
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 29401955 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 29401896
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 29401895 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 29401836
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29401835 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 29401790
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 29406310 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 29406251
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 29406250 gtcttgaagg 29406241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 115 bits (58), Expect = 4e-023
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 455 ccgcactctagaccaccgttgatgatgttcgtggtcaggccgtatccggggagcctcccc 514
|||||||| | ||| |||||||||||||| ||| || |||||| || || | | ||||
Sbjct: 30372229 ccgcactccacaccgccgttgatgatgttggtgatctcgccgtagcccggaacgcgcccc 30372170
Query: 515 gcggcgcggtcggtggcggagggcctccagtcgccggtcatcacggcgtggcacgagggc 574
|| || ||||| |||||| ||| |||| | |||||| ||||| ||||||||||| |||
Sbjct: 30372169 gccgcctggtcgtcggcggacggcgtccactggccggtgatcaccgcgtggcacgacggc 30372110
Query: 575 ttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 30372109 ttgggcgactgcggcgtcatccagaaccagaacgccgtcttgaagg 30372064
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 30375742 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 30375683
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 30375682 gtcttgaagg 30375673
>gb|AQ287446.1|AQ287446 nbxb0030E24f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030E24f, DNA sequence
Length = 740
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 233 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 292
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 293 gtcttgaagg 302
>gb|CB672878.1|CB672878 OSJNEe07C10.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07C10 3', mRNA sequence
Length = 770
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 315 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 374
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 375 gtcttgaagg 384
>gb|CB684719.1|CB684719 OSJNEf14I06.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14I06 5', mRNA sequence
Length = 839
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 446 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 387
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 386 gtcttgaagg 377
>gb|CB684720.1|CB684720 OSJNEf14I06.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14I06 3', mRNA sequence
Length = 756
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 402 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 461
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 462 gtcttgaagg 471
>gb|CF323069.1|CF323069 HDN--02-N11.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-N11, mRNA sequence
Length = 593
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 204 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 145
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 144 gtcttgaagg 135
>gb|CF324345.1|CF324345 HDN--06-E15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-E15, mRNA sequence
Length = 507
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 95 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 36
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 35 gtcttgaagg 26
>gb|CF326349.1|CF326349 JMT1--05-N01.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-N01, mRNA sequence
Length = 271
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 177 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 118
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 117 gtcttgaagg 108
>dbj|D16221.1|RICCHT1 Oryza sativa (japonica cultivar-group) Cht-1 gene for endochitinase,
complete cds
Length = 2739
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 2072 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 2013
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 2012 gtcttgaagg 2003
>dbj|AK061042.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D05, full
insert sequence
Length = 1217
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 810 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 751
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 750 gtcttgaagg 741
>dbj|AK099339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028I21, full
insert sequence
Length = 1174
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 788 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 729
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 728 gtcttgaagg 719
>dbj|AK104020.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C04, full
insert sequence
Length = 1136
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 807 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 748
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 747 gtcttgaagg 738
>dbj|AK105798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A08, full
insert sequence
Length = 1141
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 812 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 753
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 752 gtcttgaagg 743
>gb|AACV01014965.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014965, whole
genome shotgun sequence
Length = 41039
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 3164 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 3105
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 3104 gtcttgaagg 3095
>emb|X56063.1|OSENDO O.sativa mRNA for endochitinase
Length = 1160
Score = 107 bits (54), Expect = 1e-020
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 707 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 648
Query: 611 gtcttgaagg 620
||||||||||
Sbjct: 647 gtcttgaagg 638
>gb|AU097550.1|AU097550 AU097550 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6163, mRNA sequence
Length = 535
Score = 99.6 bits (50), Expect = 3e-018
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct: 148 gtcatcaccgcgtggcacgacggcttgggcgactgcggngtcatccagaaccagaacgcc 89
Query: 611 gtcttgaag 619
|||||||||
Sbjct: 88 gtcttgaag 80
>gb|C27564.1|C27564 C27564 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52229_3A, mRNA sequence
Length = 461
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 65 gtcatcaccgcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaacgcc 6
Query: 611 gtctt 615
|||||
Sbjct: 5 gtctt 1
>gb|AY378172.1| Oryza sativa (japonica cultivar-group) OsmChiI-34 mRNA, partial cds
Length = 894
Score = 93.7 bits (47), Expect = 2e-016
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 551 gtcatcacggcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggcc 610
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct: 692 gtcatcaccgcgtggcacgacggcttgggcgactgcggggtcatccagaaccagaacgcc 633
Query: 611 gtcttga 617
|||||||
Sbjct: 632 gtcttga 626
>gb|BP185058.1|BP185058 BP185058 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 12YPR007, mRNA
sequence
Length = 943
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 574 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 515
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 514 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 470
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 814 tccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
|||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tccaccggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 269
>dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L15, full
insert sequence
Length = 1073
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 585 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 526
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 525 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 481
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 814 tccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
|||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 332 tccaccggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 280
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
sequence
Length = 138824
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 89400 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 89341
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 89340 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 89296
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 102177 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 102128
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 88304 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 88255
Score = 67.9 bits (34), Expect = 9e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
|||||||||||||||||||||||||||||||| ||||||| || | | ||||||||
Sbjct: 104098 cgtcatccagaaccagatggccgtcttgaaggagaccacggcgttggtggacaccaggt- 104040
Query: 649 cgggtcgcccaccaggttcaggttcagcgc 678
||||||||| ||||||| ||| | ||||||
Sbjct: 104039 cgggtcgcctaccaggtccagctccagcgc 104010
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
sequence
Length = 153247
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 95254 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 95202
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 94960 gtcgcccacccgccggtggtctcgtgggacgtctg 94926
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete
sequence
Length = 115326
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 36605 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 36553
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 36311 gtcgcccacccgccggtggtctcgtgggacgtctg 36277
>gb|AACV01006925.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006925, whole
genome shotgun sequence
Length = 31428
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23139 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 23191
>gb|AACV01022031.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022031, whole
genome shotgun sequence
Length = 24222
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 16104 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 16045
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 16044 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 16000
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 15008 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 14959
>ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinase
(OSJNBb0015I11.14), mRNA
Length = 924
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 559 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 500
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 499 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 455
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 814 tccaccggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
|||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 306 tccaccggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 254
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2610142 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 2610083
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 2610082 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 2610038
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 2622919 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 2622870
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 2609046 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 2608997
Score = 67.9 bits (34), Expect = 9e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
|||||||||||||||||||||||||||||||| ||||||| || | | ||||||||
Sbjct: 2624840 cgtcatccagaaccagatggccgtcttgaaggagaccacggcgttggtggacaccaggt- 2624782
Query: 649 cgggtcgcccaccaggttcaggttcagcgc 678
||||||||| ||||||| ||| | ||||||
Sbjct: 2624781 cgggtcgcctaccaggtccagctccagcgc 2624752
>ref|XM_468715.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 981
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 755 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 703
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 461 gtcgcccacccgccggtggtctcgtgggacgtctg 427
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 683598 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 683546
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 806 gtcgcccatccaccggtggtttcgtgggacgtctg 840
|||||||| || |||||||| ||||||||||||||
Sbjct: 683304 gtcgcccacccgccggtggtctcgtgggacgtctg 683270
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 8658593 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 8658534
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 8658533 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 8658489
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 8674391 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 8674342
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 8657497 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 8657448
Score = 67.9 bits (34), Expect = 9e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
|||||||||||||||||||||||||||||||| ||||||| || | | ||||||||
Sbjct: 8676312 cgtcatccagaaccagatggccgtcttgaaggagaccacggcgttggtggacaccaggt- 8676254
Query: 649 cgggtcgcccaccaggttcaggttcagcgc 678
||||||||| ||||||| ||| | ||||||
Sbjct: 8676253 cgggtcgcctaccaggtccagctccagcgc 8676224
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 89.7 bits (45), Expect = 2e-015
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 560 gcgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgt 612
||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3886391 gcgtggcacgacggcttgggcgactgcggcgtcatccagaaccagaaggccgt 3886339
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 19524387 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 19524328
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 19524327 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 19524283
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 19540185 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 19540136
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 19523291 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 19523242
Score = 67.9 bits (34), Expect = 9e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
|||||||||||||||||||||||||||||||| ||||||| || | | ||||||||
Sbjct: 19542106 cgtcatccagaaccagatggccgtcttgaaggagaccacggcgttggtggacaccaggt- 19542048
Query: 649 cgggtcgcccaccaggttcaggttcagcgc 678
||||||||| ||||||| ||| | ||||||
Sbjct: 19542047 cgggtcgcctaccaggtccagctccagcgc 19542018
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 89.7 bits (45), Expect = 2e-015
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 561 cgtggcacgagggcttgggcgactgcggcgtcatccagaaccagatggccgtcttgaagg 620
|||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 20687948 cgtggcacgacggcttgttcccctgcgccgtcatccagaaccagatggccgtcttgaagg 20687889
Query: 621 ctaccacggggtctctcgccaccaggtccgggtcgcccaccaggt 665
||||||| ||| | | ||||||||| |||| |||||||||||
Sbjct: 20687888 agaccacggcgtcggtggacaccaggtctgggttgcccaccaggt 20687844
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 20700725 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 20700676
Score = 83.8 bits (42), Expect = 2e-013
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 817 accggtggtttcgtgggacgtctggccgaagaaggcggcgagctcccgcc 866
||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 20686852 accggtggtctcgtgggaggtctggccgaagaaggcggcgagctcccgcc 20686803
Score = 67.9 bits (34), Expect = 9e-009
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 589 cgtcatccagaaccagatggccgtcttgaaggctaccacggggtctctcgccaccaggtc 648
|||||||||||||||||||||||||||||||| ||||||| || | | ||||||||
Sbjct: 20702646 cgtcatccagaaccagatggccgtcttgaaggagaccacggcgttggtggacaccaggt- 20702588
Query: 649 cgggtcgcccaccaggttcaggttcagcgc 678
||||||||| ||||||| ||| | ||||||
Sbjct: 20702587 cgggtcgcctaccaggtccagctccagcgc 20702558
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,200,374
Number of Sequences: 438736
Number of extensions: 1200374
Number of successful extensions: 7999
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7320
Number of HSP's gapped (non-prelim): 659
length of query: 908
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 887
effective length of database: 2,791,206,460
effective search space: 2475800130020
effective search space used: 2475800130020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)