BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.203
(959 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU198219.1|AU198219 AU198219 Rice green shoot Oryza sati... 258 5e-066
gb|CB681630.1|CB681630 OSJNEf08C09.r OSJNEf Oryza sativa (j... 258 5e-066
gb|CB682960.1|CB682960 OSJNEf10M18.f OSJNEf Oryza sativa (j... 258 5e-066
gb|CB682961.1|CB682961 OSJNEf10M18.r OSJNEf Oryza sativa (j... 258 5e-066
dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA... 258 5e-066
dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA... 258 5e-066
dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA... 258 5e-066
dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA... 258 5e-066
dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA... 258 5e-066
gb|AACV01010566.1| Oryza sativa (japonica cultivar-group) c... 258 5e-066
ref|XM_474092.1| Oryza sativa (japonica cultivar-group), p... 258 5e-066
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 258 5e-066
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 258 5e-066
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 258 5e-066
emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromoso... 258 5e-066
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 258 5e-066
gb|AU095966.1|AU095966 AU095966 Rice green shoot Oryza sati... 252 3e-064
gb|AU095885.1|AU095885 AU095885 Rice green shoot Oryza sati... 240 1e-060
gb|D46826.1|D46826 RICS11741A Rice green shoot Oryza sativa... 206 2e-050
gb|AU096374.1|AU096374 AU096374 Rice green shoot Oryza sati... 182 2e-043
gb|AU095985.1|AU095985 AU095985 Rice green shoot Oryza sati... 180 9e-043
gb|CV722569.1|CV722569 YTPSP--01-N18.b1 TPSP-overexpression... 145 5e-032
gb|AU174081.1|AU174081 AU174081 Rice green shoot Oryza sati... 131 8e-028
gb|AU095946.1|AU095946 AU095946 Rice green shoot Oryza sati... 107 1e-020
gb|CB683750.1|CB683750 OSJNEf12J03.f OSJNEf Oryza sativa (j... 82 6e-013
gb|CB681355.1|CB681355 OSJNEf07H22.r OSJNEf Oryza sativa (j... 60 2e-006
gb|CB684926.1|CB684926 OSJNEf14O16.r OSJNEf Oryza sativa (j... 60 2e-006
gb|CB660560.1|CB660560 OSJNEd02H15.r OSJNEd Oryza sativa (j... 56 4e-005
gb|CX728264.1|CX728264 OSJNEf03B23.r OSJNEf Oryza sativa (j... 56 4e-005
gb|AU173792.1|AU173792 AU173792 Rice root Oryza sativa (jap... 54 1e-004
gb|CB643292.1|CB643292 OSJNEb03O11.r OSJNEb Oryza sativa (j... 54 1e-004
gb|CV727250.1|CV727250 14Salt--05-E24.b1 Salt treated rice ... 54 1e-004
gb|AU068610.1|AU068610 AU068610 Rice callus Oryza sativa (j... 52 6e-004
gb|AU081583.1|AU081583 AU081583 Rice cDNA from young root O... 52 6e-004
gb|AU082158.1|AU082158 AU082158 Rice root Oryza sativa (jap... 52 6e-004
gb|CA754554.1|CA754554 BR030001000_PLATE_F03_22_029.ab1 OA ... 52 6e-004
gb|CA756160.1|CA756160 BR030036000_PLATE_D01_4_012.ab1 OA O... 52 6e-004
gb|CB659556.1|CB659556 OSJNEc16K08.f OSJNEc Oryza sativa (j... 52 6e-004
gb|CB678992.1|CB678992 OSJNEf01P14.r OSJNEf Oryza sativa (j... 52 6e-004
gb|CB679398.1|CB679398 OSJNEf02N18.f OSJNEf Oryza sativa (j... 52 6e-004
gb|CB680452.1|CB680452 OSJNEf05D04.r OSJNEf Oryza sativa (j... 52 6e-004
gb|CB680925.1|CB680925 OSJNEf06H23.r OSJNEf Oryza sativa (j... 52 6e-004
gb|CB681354.1|CB681354 OSJNEf07H22.f OSJNEf Oryza sativa (j... 52 6e-004
gb|CB683325.1|CB683325 OSJNEf11J01.r OSJNEf Oryza sativa (j... 52 6e-004
gb|CB685490.1|CB685490 OSJNEf15O17.f OSJNEf Oryza sativa (j... 52 6e-004
gb|CF291057.1|CF291057 14ROOT--01-F09.g1 Rice root plasmid ... 52 6e-004
gb|CF325935.1|CF325935 JMT1--04-K07.g1 AtJMT-overexpressing... 52 6e-004
gb|CV725665.1|CV725665 14Salt--02-N21.g1 Salt treated rice ... 52 6e-004
dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15... 52 6e-004
gb|AACV01010468.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
gb|AACV01022075.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
ref|NM_197679.1| Oryza sativa (japonica cultivar-group) put... 52 6e-004
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 52 6e-004
ref|XM_473862.1| Oryza sativa (japonica cultivar-group), p... 52 6e-004
ref|XM_473863.1| Oryza sativa (japonica cultivar-group), p... 52 6e-004
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 52 6e-004
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromoso... 52 6e-004
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|AU029427.1|AU029427 AU029427 Rice panicle shorter than 3... 50 0.002
gb|AU032568.1|AU032568 AU032568 Rice green shoot Oryza sati... 50 0.002
gb|AU032570.1|AU032570 AU032570 Rice green shoot Oryza sati... 50 0.002
gb|AU101405.1|AU101405 AU101405 Rice panicle shorter than 3... 50 0.002
gb|AU174369.1|AU174369 AU174369 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU184680.1|AU184680 AU184680 Rice root Oryza sativa (jap... 50 0.002
gb|AU184738.1|AU184738 AU184738 Rice root Oryza sativa (jap... 50 0.002
gb|CB679219.1|CB679219 OSJNEf02G23.r OSJNEf Oryza sativa (j... 50 0.002
gb|CB679517.1|CB679517 OSJNEf03B23.f OSJNEf Oryza sativa (j... 50 0.002
dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I1... 50 0.002
dbj|AP004883.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP004037.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01005096.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01022087.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AU082161.1|AU082161 AU082161 Rice root Oryza sativa (jap... 48 0.009
gb|CB000988.1|CB000988 S234F_A10 Rice cold stress germinati... 48 0.009
dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
gb|AACV01022076.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|NM_197681.1| Oryza sativa (japonica cultivar-group) put... 48 0.009
gb|AQ796380.1|AQ796380 nbxb0063M17f CUGI Rice BAC Library O... 46 0.035
gb|CV724500.1|CV724500 14Salt--01-B21.b1 Salt treated rice ... 46 0.035
gb|CV725574.1|CV725574 14Salt--02-L17.g1 Salt treated rice ... 46 0.035
gb|CV727251.1|CV727251 14Salt--05-E24.g1 Salt treated rice ... 46 0.035
gb|CV727305.1|CV727305 14Salt--05-G05.b1 Salt treated rice ... 46 0.035
gb|CV727622.1|CV727622 14Salt--05-N17.g1 Salt treated rice ... 46 0.035
gb|CV728268.1|CV728268 14Salt--06-O07.b1 Salt treated rice ... 46 0.035
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 46 0.035
dbj|AK062654.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.035
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 46 0.035
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 46 0.035
gb|AACV01012630.1| Oryza sativa (japonica cultivar-group) c... 46 0.035
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 46 0.035
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.035
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.035
gb|AQ365861.2|AQ365861 nbxb0064H21f CUGI Rice BAC Library O... 44 0.14
gb|AU065430.1|AU065430 AU065430 Rice root Oryza sativa (jap... 44 0.14
gb|AU082154.1|AU082154 AU082154 Rice root Oryza sativa (jap... 44 0.14
gb|AU198065.1|AU198065 AU198065 Rice green shoot Oryza sati... 44 0.14
gb|CA755383.1|CA755383 BR030019000_PLATE_E10_77_082.ab1 OA ... 44 0.14
gb|CF291056.1|CF291056 14ROOT--01-F09.b1 Rice root plasmid ... 44 0.14
gb|CF291694.1|CF291694 14ROOT--02-D16.b1 Rice root plasmid ... 44 0.14
gb|CF325876.1|CF325876 JMT1--04-H12.g1 AtJMT-overexpressing... 44 0.14
gb|CV722920.1|CV722920 root--01-P12.g1 Rice root lambda pha... 44 0.14
gb|CV724379.1|CV724379 root--06-N13.g1 Rice root lambda pha... 44 0.14
gb|CV724579.1|CV724579 14Salt--01-D21.b1 Salt treated rice ... 44 0.14
gb|CV725664.1|CV725664 14Salt--02-N21.b1 Salt treated rice ... 44 0.14
gb|CV725882.1|CV725882 14Salt--03-D14.g1 Salt treated rice ... 44 0.14
gb|CV728302.1|CV728302 14Salt--06-P02.b1 Salt treated rice ... 44 0.14
gb|CV728303.1|CV728303 14Salt--06-P02.g1 Salt treated rice ... 44 0.14
dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK103618.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
gb|AY466108.1| Oryza sativa (japonica cultivar-group) lipid... 44 0.14
dbj|AP005804.2| Oryza sativa (japonica cultivar-group) geno... 44 0.14
dbj|AP005071.3| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01003426.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01010255.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
gb|AACV01022073.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|NM_197672.1| Oryza sativa (japonica cultivar-group) put... 44 0.14
ref|XM_473450.1| Oryza sativa (japonica cultivar-group), p... 44 0.14
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.14
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 44 0.14
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.14
emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromoso... 44 0.14
>gb|AU198219.1|AU198219 AU198219 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16276, mRNA sequence
Length = 453
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 425 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 366
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 365 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 306
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 305 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 246
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 245 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 186
Query: 556 aggacg 561
||||||
Sbjct: 185 aggacg 180
>gb|CB681630.1|CB681630 OSJNEf08C09.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08C09 3', mRNA sequence
Length = 642
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 369 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 428
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 429 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 488
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 489 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 548
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 549 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 608
Query: 556 aggacg 561
||||||
Sbjct: 609 aggacg 614
>gb|CB682960.1|CB682960 OSJNEf10M18.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10M18 5', mRNA sequence
Length = 717
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 633 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 574
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 573 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 514
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 513 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 454
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 453 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 394
Query: 556 aggacg 561
||||||
Sbjct: 393 aggacg 388
>gb|CB682961.1|CB682961 OSJNEf10M18.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10M18 3', mRNA sequence
Length = 635
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 374 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 433
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
| | | ||||||||||||||||||||||||||||||||||||||| || || ||||| |
Sbjct: 434 aaatgctgatgtcgagcaccttggccttgatggcggtgcaaaggcaggcggcggcggaca 493
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 494 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 553
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 554 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 613
Query: 556 aggacg 561
||||||
Sbjct: 614 aggacg 619
>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
insert sequence
Length = 1257
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 924 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 865
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 864 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 805
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 804 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 745
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 744 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 685
Query: 556 aggacg 561
||||||
Sbjct: 684 aggacg 679
>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
insert sequence
Length = 1272
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 926 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 867
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 866 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 807
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 806 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 747
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 746 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 687
Query: 556 aggacg 561
||||||
Sbjct: 686 aggacg 681
>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
insert sequence
Length = 1251
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 918 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 859
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 858 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 799
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 798 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 739
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 738 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 679
Query: 556 aggacg 561
||||||
Sbjct: 678 aggacg 673
>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
insert sequence
Length = 1242
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 922 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 863
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 862 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 803
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 802 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 743
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 742 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 683
Query: 556 aggacg 561
||||||
Sbjct: 682 aggacg 677
>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
insert sequence
Length = 1255
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 922 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 863
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 862 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 803
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 802 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 743
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 742 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 683
Query: 556 aggacg 561
||||||
Sbjct: 682 aggacg 677
>gb|AACV01010566.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010566, whole
genome shotgun sequence
Length = 72288
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 20076 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 20017
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 20016 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 19957
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 19956 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 19897
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 19896 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 19837
Query: 556 aggacg 561
||||||
Sbjct: 19836 aggacg 19831
>ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 783
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 772 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 713
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 712 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 653
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 652 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 593
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 592 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 533
Query: 556 aggacg 561
||||||
Sbjct: 532 aggacg 527
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 222162 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 222221
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 222222 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 222281
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 222282 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 222341
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 222342 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 222401
Query: 556 aggacg 561
||||||
Sbjct: 222402 aggacg 222407
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 10494628 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 10494687
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 10494688 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 10494747
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 10494748 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 10494807
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 10494808 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 10494867
Query: 556 aggacg 561
||||||
Sbjct: 10494868 aggacg 10494873
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 8790539 cgagcgccttggccttgatggcggtgcagaggca 8790506
Score = 44.1 bits (22), Expect = 0.14
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||| ||||| |||||
Sbjct: 5556093 cgagcacgttggccttgatggccgtgcagaggca 5556060
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 29638727 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 29638786
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 29638787 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 29638846
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 29638847 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 29638906
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 29638907 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 29638966
Query: 556 aggacg 561
||||||
Sbjct: 29638967 aggacg 29638972
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 27934638 cgagcgccttggccttgatggcggtgcagaggca 27934605
Score = 44.1 bits (22), Expect = 0.14
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||| ||||| |||||
Sbjct: 24700192 cgagcacgttggccttgatggccgtgcagaggca 24700159
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
complete sequence
Length = 142556
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 89433 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 89492
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 89493 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 89552
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 89553 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 89612
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 89613 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 89672
Query: 556 aggacg 561
||||||
Sbjct: 89673 aggacg 89678
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 258 bits (130), Expect = 5e-066
Identities = 217/246 (88%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 32827147 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 32827206
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 32827207 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 32827266
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 32827267 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 32827326
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 32827327 cgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccg 32827386
Query: 556 aggacg 561
||||||
Sbjct: 32827387 aggacg 32827392
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 31096026 cgagcgccttggccttgatggcggtgcagaggca 31095993
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 31085607 cgagcgccttggccttgatggcggtgcagaggca 31085574
Score = 44.1 bits (22), Expect = 0.14
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||| ||||| |||||
Sbjct: 27727063 cgagcacgttggccttgatggccgtgcagaggca 27727030
>gb|AU095966.1|AU095966 AU095966 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11780, mRNA sequence
Length = 486
Score = 252 bits (127), Expect = 3e-064
Identities = 216/246 (87%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 254 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 195
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 194 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 135
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 134 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacct 75
Query: 496 cgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccg 555
|||| ||||| | ||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct: 74 cgttgccgaggaggtccacgcacacgccgagcttgancgcgtcgatggggcacgtgtccg 15
Query: 556 aggacg 561
||||||
Sbjct: 14 aggacg 9
>gb|AU095885.1|AU095885 AU095885 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11406, mRNA sequence
Length = 542
Score = 240 bits (121), Expect = 1e-060
Identities = 216/247 (87%), Gaps = 1/247 (0%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 310 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 251
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||| ||||||||||| ||||| || || ||||| |
Sbjct: 250 agatgctgatgtcgagcaccttggccttnatggcggtgcagaggcaggcngcggcggaca 191
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgt-gcacc 494
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| || |||||
Sbjct: 190 ggccggcgatgtccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtggcacc 131
Query: 495 tcgttcccgagaacgtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtcc 554
||||| ||||| | ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 130 tcgttgccgaggaggtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtcc 71
Query: 555 gaggacg 561
|||||||
Sbjct: 70 gaggacg 64
>gb|D46826.1|D46826 RICS11741A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 222
Score = 206 bits (104), Expect = 2e-050
Identities = 190/219 (86%)
Strand = Plus / Minus
Query: 343 agttgacgagcacctcgagcgcgatgggcacgtagacggagatgtcgagcaccttggcct 402
|||||||||| | || |||| ||||||| | ||||| | ||||||||||||||||||||
Sbjct: 222 agttgacgaggagcttgagctcgatggggatgtagatgctgatgtcgagcaccttggcct 163
Query: 403 tgatggcggtgcaaaggcacgccgccgcggagagcccggcgatgcccttcacgagcgggc 462
||||||||||||| ||||| || || ||||| || ||||||||| ||||||| |||||||
Sbjct: 162 tgatggcggtgcagaggcaggcggcggcggacaggccggcgatgtccttcaccagcgggc 103
Query: 463 agcactggacgttggcgtcgccgacgtgcacctcgttcccgagaacgtccacgcaggcgc 522
||||| |||| ||||||||||| |||||||||||| ||||| | ||||||||| |||
Sbjct: 102 agcacgtnacgtgggcgtcgccgatgtgcacctcgttgccgaggaggtccacgcacacgc 43
Query: 523 cgagcttgagcgcgtcgatggggcacttgtccgaggacg 561
|||||||||||||||||||||||||| |||||| |||||
Sbjct: 42 cgagcttgagcgcgtcgatggggcacgtgtccgcggacg 4
>gb|AU096374.1|AU096374 AU096374 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13621, mRNA sequence
Length = 572
Score = 182 bits (92), Expect = 2e-043
Identities = 192/224 (85%), Gaps = 2/224 (0%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 224 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 165
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 164 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcngcggcggaca 105
Query: 436 gcccgg-cgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacc 494
| |||| |||| ||||||| |||||||||||| |||| ||||||||||| |||||||
Sbjct: 104 ggccggtcgatntccttcaccagcgggcagcacgtcacgtgggcgtcgccgatgtgcacc 45
Query: 495 tcgttccc-gagaacgtccacgcaggcgccgagcttgagcgcgt 537
||||| || ||| | ||||||||| |||||| |||||||||||
Sbjct: 44 tcgttnccggaggaggtccacgcacacgccgancttgagcgcgt 1
>gb|AU095985.1|AU095985 AU095985 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11820, mRNA sequence
Length = 537
Score = 180 bits (91), Expect = 9e-043
Identities = 164/189 (86%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
|||| || ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 189 tgtanccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 130
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 129 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 70
Query: 436 gcccggcgatgcccttcacgagcgggcagcactggacgttggcgtcgccgacgtgcacct 495
| ||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||
Sbjct: 69 ggccggcgatgtccttcaccagcgggcagcacgtcacgtnggcgtcgccgatgtgcacct 10
Query: 496 cgttcccga 504
|||| ||||
Sbjct: 9 cgttgccga 1
>gb|CV722569.1|CV722569 YTPSP--01-N18.b1 TPSP-overexpression transgenic rice yeast two
hybrid lambda phage cDNA library (YTPSP) Oryza sativa
(japonica cultivar-group) cDNA clone YTPSP--01-N18, mRNA
sequence
Length = 508
Score = 145 bits (73), Expect = 5e-032
Identities = 134/153 (87%), Gaps = 1/153 (0%)
Strand = Plus / Plus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 312 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 371
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggcacgccgccgcggaga 435
||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||| |
Sbjct: 372 agatgctgatgtcgagcaccttggccttgatggcggtgcagaggcaggcggcggcggaca 431
Query: 436 -gcccggcgatgcccttcacgagcgggcagcac 467
||| ||||||| ||||||| ||||||||||||
Sbjct: 432 ggccgggcgatgtccttcaccagcgggcagcac 464
>gb|AU174081.1|AU174081 AU174081 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15185, mRNA sequence
Length = 457
Score = 131 bits (66), Expect = 8e-028
Identities = 96/106 (90%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | ||
Sbjct: 109 tgtagccaggcgggacgtcgcagccgcagttgacgaggagcttgagcgcgatggggatgt 50
Query: 376 agacggagatgtcgagcaccttggccttgatggcggtgcaaaggca 421
||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 49 agatgctgatgtcgagcaccttggccttgatggcggtgcaaaggca 4
>gb|AU095946.1|AU095946 AU095946 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11741, mRNA sequence
Length = 492
Score = 107 bits (54), Expect = 1e-020
Identities = 124/147 (84%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 316 tgtagcctggcgggacggcgcagccgcagttgacgagcacctcgagcgcgatgggcacgt 375
||||||| |||||||| |||||||||| |||||||| | || |||||||||||| ||
Sbjct: 147 tgtagccaagcgggacgtcgcagccgcaattgacgaggagcttgagcgcgatggggntgt 88
Query: 376 agacggagatgtcgagcaccttgg-ccttgatggcggtgcaaaggcacgccgccgcggag 434
| | | ||||||||||||||||| |||||||||||||||||||||| || || |||||
Sbjct: 87 anatgctgatgtcgagcaccttgggccttgatggcggtgcaaaggcaggcggcggcggac 28
Query: 435 agcccggcgatgcccttcacgagcggg 461
| ||||||||| ||||||| ||||||
Sbjct: 27 angccggcgatgtccttcaccagcggg 1
>gb|CB683750.1|CB683750 OSJNEf12J03.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf12J03 5', mRNA sequence
Length = 713
Score = 81.8 bits (41), Expect = 6e-013
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 509 gtccacgcaggcgccgagcttgagcgcgtcgatggggcacttgtccgaggacg 561
||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 708 gtccacgcacacgccgagcttgagcgcgtcgatggggcacgtgtccgaggacg 656
>gb|CB681355.1|CB681355 OSJNEf07H22.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07H22 3', mRNA sequence
Length = 643
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| ||||||||||||||||||||||||||||
Sbjct: 441 cgagcgccttggccttgatggcggtgcaaaggca 474
>gb|CB684926.1|CB684926 OSJNEf14O16.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14O16 3', mRNA sequence
Length = 697
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| ||||||||||||||||||||||||||||
Sbjct: 483 cgagcgccttggccttgatggcggtgcaaaggca 516
>gb|CB660560.1|CB660560 OSJNEd02H15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02H15 3', mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 4e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 394 ccttggccttgatggcggtgcaaaggca 421
||||||||||||||||||||||||||||
Sbjct: 477 ccttggccttgatggcggtgcaaaggca 504
>gb|CX728264.1|CX728264 OSJNEf03B23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03B23 3', mRNA sequence
Length = 503
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 383 gatgtcgagcaccttggccttgatggcggtgcaaag 418
|||| ||||||| |||||||||||||||||||||||
Sbjct: 348 gatgccgagcacgttggccttgatggcggtgcaaag 383
>gb|AU173792.1|AU173792 AU173792 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3746, mRNA sequence
Length = 444
Score = 54.0 bits (27), Expect = 1e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||| |||||||||
Sbjct: 69 cgagcacgttggccttgatggcggngcaaaggca 36
>gb|CB643292.1|CB643292 OSJNEb03O11.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03O11 3', mRNA sequence
Length = 716
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 383 gatgtcgagcaccttggccttgatggcggtgcaaa 417
|||| ||||||| ||||||||||||||||||||||
Sbjct: 338 gatgccgagcacgttggccttgatggcggtgcaaa 372
>gb|CV727250.1|CV727250 14Salt--05-E24.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-E24, mRNA sequence
Length = 440
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 383 gatgtcgagcaccttggccttgatggcggtgcaaaggca 421
|||| |||| || ||||||||||||||||||||||||||
Sbjct: 327 gatgccgaggacgttggccttgatggcggtgcaaaggca 365
>gb|AU068610.1|AU068610 AU068610 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C30533_14A, mRNA sequence
Length = 508
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 125 cgagcgccttggccttgatggcggtgcagaggca 92
>gb|AU081583.1|AU081583 AU081583 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10135_2Z, mRNA sequence
Length = 471
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 76 cgagcacgttggccttgatggcggtgcagaggca 43
>gb|AU082158.1|AU082158 AU082158 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0638, mRNA sequence
Length = 561
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 182 cgagcacgttggccttgatggcggtgcagaggca 149
>gb|CA754554.1|CA754554 BR030001000_PLATE_F03_22_029.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030001000_PLATE_F03_22_029.ab1 similar to proline rich
protein homolog WCOR518 - wheat (fragment)
gi|1657851|gb|AAB18205.1| (U73214) cold acclimation
protein WCOR518 [Triticum aestivum], mRNA sequence
Length = 624
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 413 cgagcgccttggccttgatggcggtgcagaggca 380
>gb|CA756160.1|CA756160 BR030036000_PLATE_D01_4_012.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030036000_PLATE_D01_4_012.ab1 similar to (AC026758)
putative lipid transfer protein [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 641
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 391 cgagcacgttggccttgatggcggtgcagaggca 358
>gb|CB659556.1|CB659556 OSJNEc16K08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16K08 5', mRNA sequence
Length = 869
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 524 cgagcgccttggccttgatggcggtgcagaggca 491
>gb|CB678992.1|CB678992 OSJNEf01P14.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01P14 3', mRNA sequence
Length = 689
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 468 cgagcgccttggccttgatggcggtgcagaggca 501
>gb|CB679398.1|CB679398 OSJNEf02N18.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02N18 5', mRNA sequence
Length = 705
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 419 cgagcgccttggccttgatggcggtgcagaggca 386
>gb|CB680452.1|CB680452 OSJNEf05D04.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05D04 3', mRNA sequence
Length = 527
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 327 cgagcgccttggccttgatggcggtgcagaggca 360
>gb|CB680925.1|CB680925 OSJNEf06H23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06H23 3', mRNA sequence
Length = 765
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 583 cgagcgccttggccttgatggcggtgcagaggca 616
>gb|CB681354.1|CB681354 OSJNEf07H22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07H22 5', mRNA sequence
Length = 685
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 206 cgagcgccttggccttgatggcggtgcagaggca 173
>gb|CB683325.1|CB683325 OSJNEf11J01.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11J01 3', mRNA sequence
Length = 671
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 476 cgagcgccttggccttgatggcggtgcagaggca 509
>gb|CB685490.1|CB685490 OSJNEf15O17.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15O17 5', mRNA sequence
Length = 727
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 387 cgagcacgttggccttgatggcggtgcagaggca 354
>gb|CF291057.1|CF291057 14ROOT--01-F09.g1 Rice root plasmid cDNA library (14ROOT) Oryza
sativa (japonica cultivar-group) cDNA clone
14ROOT--01-F09, mRNA sequence
Length = 504
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 396 ttggccttgatggcggtgcaaaggca 421
||||||||||||||||||||||||||
Sbjct: 343 ttggccttgatggcggtgcaaaggca 368
>gb|CF325935.1|CF325935 JMT1--04-K07.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-K07, mRNA sequence
Length = 540
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 383 cgagcacgttggccttgatggcggtgcagaggca 350
>gb|CV725665.1|CV725665 14Salt--02-N21.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-N21, mRNA sequence
Length = 420
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 396 ttggccttgatggcggtgcaaaggca 421
||||||||||||||||||||||||||
Sbjct: 337 ttggccttgatggcggtgcaaaggca 362
>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full
insert sequence
Length = 713
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||| |||||||||||||||||||||| |||||
Sbjct: 236 cgagcgccttggccttgatggcggtgcagaggca 203
>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full
insert sequence
Length = 757
Score = 52.0 bits (26), Expect = 6e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 388 cgagcaccttggccttgatggcggtgcaaaggca 421
||||||| |||||||||||||||||||| |||||
Sbjct: 403 cgagcacgttggccttgatggcggtgcagaggca 370
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,422,291
Number of Sequences: 438736
Number of extensions: 1422291
Number of successful extensions: 12475
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11648
Number of HSP's gapped (non-prelim): 820
length of query: 959
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 938
effective length of database: 2,791,206,460
effective search space: 2618151659480
effective search space used: 2618151659480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)