BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184724.1|BP184724 BP184724 pNS rice panicle cDNA, flow... 377 e-102
dbj|AK063054.1| Oryza sativa (japonica cultivar-group) cDNA... 377 e-102
ref|XM_467591.1| Oryza sativa (japonica cultivar-group), mRNA 377 e-102
gb|CF315217.1|CF315217 HD--04-A22.b1 OsHDAC1-overexpressing... 313 9e-083
dbj|AK058973.1| Oryza sativa (japonica cultivar-group) cDNA... 220 1e-054
dbj|AK073155.1| Oryza sativa (japonica cultivar-group) cDNA... 220 1e-054
ref|NM_185783.1| Oryza sativa (japonica cultivar-group), p... 218 4e-054
gb|CF320059.1|CF320059 HD--10-M18.g1 OsHDAC1-overexpressing... 212 2e-052
gb|AU031225.2|AU031225 AU031225 Rice cDNA from immature lea... 141 7e-031
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 139 3e-030
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|AACV01005331.1| Oryza sativa (japonica cultivar-group) c... 139 3e-030
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 139 3e-030
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|D15191.1|D15191 RICC0235A Rice callus Oryza sativa (japo... 129 3e-027
gb|C28333.1|C28333 C28333 Rice callus cDNA Oryza sativa (ja... 119 3e-024
gb|CF315218.1|CF315218 HD--04-A22.g1 OsHDAC1-overexpressing... 92 6e-016
gb|AACV01013542.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
dbj|AP003044.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
gb|AACV01005332.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
gb|CB665649.1|CB665649 OSJNEd12D03.f OSJNEd Oryza sativa (j... 42 0.50
dbj|AK060393.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.50
dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.50
dbj|AK101134.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.50
dbj|AP004698.3| Oryza sativa (japonica cultivar-group) geno... 42 0.50
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|AC134241.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|AC145396.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) c... 42 0.50
gb|AACV01011307.1| Oryza sativa (japonica cultivar-group) c... 42 0.50
gb|AACV01017324.1| Oryza sativa (japonica cultivar-group) c... 42 0.50
ref|XM_480193.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.50
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.50
ref|NT_107226.1| Oryza sativa (japonica cultivar-group) 42 0.50
ref|XM_507137.1| PREDICTED Oryza sativa (japonica cultivar-... 42 0.50
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 42 0.50
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|CH401195.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.50
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.50
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 42 0.50
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.50
>gb|BP184724.1|BP184724 BP184724 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 14YPG008, mRNA
sequence
Length = 657
Score = 377 bits (190), Expect = e-102
Identities = 393/460 (85%), Gaps = 3/460 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 465 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 406
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 405 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 346
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
||||||| || ||||||||||| || || || || |||||||||||||||||||| ||||
Sbjct: 345 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 286
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 285 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 226
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||||||||| ||||| || |||||||| ||||||||||| || || ||||||||||| |
Sbjct: 225 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 166
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| |||||||| ||||| |||||||| ||||| || ||||| || |||||||||||||
Sbjct: 165 cctccttgactccccgcttcaggcacttggcctccgatgctcgccggacgagcttgaggg 106
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| ||||||||||||||||| || ||||| || |||||||||| | |||||| | ||
Sbjct: 105 ttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcgagcgccgttgggg 46
Query: 798 ccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
||||||||| || |||||||| |||||||||||||||
Sbjct: 45 ccttcttcttctccacctccgtgttgctccccatcgccgc 6
>dbj|AK063054.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F02, full
insert sequence
Length = 726
Score = 377 bits (190), Expect = e-102
Identities = 393/460 (85%), Gaps = 3/460 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 521 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 462
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 461 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 402
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
||||||| || ||||||||||| || || || || |||||||||||||||||||| ||||
Sbjct: 401 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 342
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 341 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 282
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||||||||| ||||| || |||||||| ||||||||||| || || ||||||||||| |
Sbjct: 281 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 222
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| |||||||| ||||| |||||||| ||||| || ||||| || |||||||||||||
Sbjct: 221 cctccttgactccccgcttcaggcacttggcctccgatgctcgccggacgagcttgaggg 162
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| ||||||||||||||||| || ||||| || |||||||||| | |||||| | ||
Sbjct: 161 ttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcgagcgccgttgggg 102
Query: 798 ccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
||||||||| || |||||||| |||||||||||||||
Sbjct: 101 ccttcttcttctccacctccgtgttgctccccatcgccgc 62
>ref|XM_467591.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 726
Score = 377 bits (190), Expect = e-102
Identities = 393/460 (85%), Gaps = 3/460 (0%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 521 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 462
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 461 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 402
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
||||||| || ||||||||||| || || || || |||||||||||||||||||| ||||
Sbjct: 401 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 342
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 341 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 282
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||||||||| ||||| || |||||||| ||||||||||| || || ||||||||||| |
Sbjct: 281 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 222
Query: 678 cctctttgactccgcgcttgaggcacttcgcctcggaggctcgtcgcacgagcttgaggg 737
|||| |||||||| ||||| |||||||| ||||| || ||||| || |||||||||||||
Sbjct: 221 cctccttgactccccgcttcaggcacttggcctccgatgctcgccggacgagcttgaggg 162
Query: 738 tccgcttgcagagcttctttccagcgaggggtttcgcgatggacatcagcgccaccgagg 797
| ||||||||||||||||| || ||||| || |||||||||| | |||||| | ||
Sbjct: 161 ttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcgagcgccgttgggg 102
Query: 798 ccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
||||||||| || |||||||| |||||||||||||||
Sbjct: 101 ccttcttcttctccacctccgtgttgctccccatcgccgc 62
>gb|CF315217.1|CF315217 HD--04-A22.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--04-A22, mRNA sequence
Length = 679
Score = 313 bits (158), Expect = 9e-083
Identities = 290/334 (86%)
Strand = Plus / Minus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 602 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 543
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 542 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 483
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacat 557
||||||| || ||||||||||| || || || || |||||||||||||||||||| ||||
Sbjct: 482 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 423
Query: 558 atacgtaaggaacattagcttcctcacatagtatcggaacatgtgtaatcacatcaatag 617
||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 422 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 363
Query: 618 gagaaatatttccagcgatcacacacaatcctttgttcccgcggcgaatgctcttgacta 677
|||||||||| ||||| || |||||||| ||||||||||| || || ||||||||||| |
Sbjct: 362 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 303
Query: 678 cctctttgactccgcgcttgaggcacttcgcctc 711
|||| |||||||| ||||| |||||||| |||||
Sbjct: 302 cctccttgactccccgcttcaggcacttggcctc 269
Score = 69.9 bits (35), Expect = 2e-009
Identities = 94/113 (83%), Gaps = 3/113 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| |
Sbjct: 135 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 76
Query: 785 agcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
|||||| | ||||||||||| || |||||||| |||||||||||||||
Sbjct: 75 agcgccgttggggccttcttcttctccacctccgtgttgctccccatcgccgc 23
>dbj|AK058973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D03, full
insert sequence
Length = 1175
Score = 220 bits (111), Expect = 1e-054
Identities = 305/369 (82%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 852 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 793
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 792 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 733
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | |||
Sbjct: 732 caaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcac 673
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcac 703
|||||||| | ||||||||| ||||||||||| ||||| |||||||| ||||| | |||
Sbjct: 672 aatcctttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcat 613
Query: 704 ttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcg 763
|| ||||| || ||||| || |||||||||||||| ||||||||||||||||| || |||
Sbjct: 612 ttggcctcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcg 553
Query: 764 aggggtttcgcgatggacatcagcgccac---cgaggccttcttctccgtctccgtgtcg 820
|| || |||||||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 552 agcggcttcgcgatgggcgccagcgccacgggcgtcttcttcttctccgcctccgtgtcg 493
Query: 821 ctccccatc 829
|||||||||
Sbjct: 492 ctccccatc 484
>dbj|AK073155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011J22, full
insert sequence
Length = 784
Score = 220 bits (111), Expect = 1e-054
Identities = 305/369 (82%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 469 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 410
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 409 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 350
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | |||
Sbjct: 349 caaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcac 290
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcac 703
|||||||| | ||||||||| ||||||||||| ||||| |||||||| ||||| | |||
Sbjct: 289 aatcctttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcat 230
Query: 704 ttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcg 763
|| ||||| || ||||| || |||||||||||||| ||||||||||||||||| || |||
Sbjct: 229 ttggcctcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcg 170
Query: 764 aggggtttcgcgatggacatcagcgccac---cgaggccttcttctccgtctccgtgtcg 820
|| || |||||||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 169 agcggcttcgcgatgggcgccagcgccacgggcgtcttcttcttctccgcctccgtgtcg 110
Query: 821 ctccccatc 829
|||||||||
Sbjct: 109 ctccccatc 101
>ref|NM_185783.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 453
Score = 218 bits (110), Expect = 4e-054
Identities = 304/368 (82%), Gaps = 3/368 (0%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 368 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 309
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 308 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 249
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | |||
Sbjct: 248 caaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcac 189
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcac 703
|||||||| | ||||||||| ||||||||||| ||||| |||||||| ||||| | |||
Sbjct: 188 aatcctttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcat 129
Query: 704 ttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcg 763
|| ||||| || ||||| || |||||||||||||| ||||||||||||||||| || |||
Sbjct: 128 ttggcctcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcg 69
Query: 764 aggggtttcgcgatggacatcagcgccac---cgaggccttcttctccgtctccgtgtcg 820
|| || |||||||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 68 agcggcttcgcgatgggcgccagcgccacgggcgtcttcttcttctccgcctccgtgtcg 9
Query: 821 ctccccat 828
||||||||
Sbjct: 8 ctccccat 1
>gb|CF320059.1|CF320059 HD--10-M18.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--10-M18, mRNA sequence
Length = 640
Score = 212 bits (107), Expect = 2e-052
Identities = 304/369 (82%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 494 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 435
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 434 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 375
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| | ||||||||| |||||||| || ||||| || | |||
Sbjct: 374 caaaggatgggaacatgtgttaccacatcaatgggagaaatgttgccagcaatgatgcac 315
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcac 703
|||||||| | ||||||||| ||||||||||| ||||| |||||||| ||||| | |||
Sbjct: 314 aatcctttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcat 255
Query: 704 ttcgcctcggaggctcgtcgcacgagcttgagggtccgcttgcagagcttctttccagcg 763
|| ||||| || ||||| || |||||||||||||| ||||||||||||||||| || |||
Sbjct: 254 ttggcctcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcg 195
Query: 764 aggggtttcgcgatggacatcagcgccac---cgaggccttcttctccgtctccgtgtcg 820
|| || |||||||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 194 agcggcttcgcgatgggcgccagcgccacgggcgtcttcttcttctccgcctccgtgtcg 135
Query: 821 ctccccatc 829
|||||||||
Sbjct: 134 ctccccatc 126
>gb|AU031225.2|AU031225 AU031225 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61165, mRNA sequence
Length = 609
Score = 141 bits (71), Expect = 7e-031
Identities = 188/227 (82%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 266 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 207
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 206 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 147
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | |||
Sbjct: 146 caaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcac 87
Query: 644 aatcctttgttcccgcggcgaatgctcttgactacctctttgactcc 690
|||||||| | ||||||||| ||||||||||| ||||| ||||||||
Sbjct: 86 aatcctttctgcccgcggcggatgctcttgacgacctccttgactcc 40
>dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0615D09,
*** SEQUENCING IN PROGRESS ***
Length = 146936
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 4427 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 4486
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 4487 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 4532
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 3508 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 3567
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 3568 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 3627
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 3628 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 3672
Score = 69.9 bits (35), Expect = 2e-009
Identities = 94/113 (83%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| |
Sbjct: 5390 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 5449
Query: 785 agcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
|||||| | ||||||||||| || |||||||| |||||||||||||||
Sbjct: 5450 agcgccgttggggccttcttcttctccacctccgtgttgctccccatcgccgc 5502
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 5192 cctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcacttg 5251
Query: 707 gcctc 711
|||||
Sbjct: 5252 gcctc 5256
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0072H09
Length = 160541
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 23883 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 23942
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 23943 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 23988
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 22964 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 23023
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 23024 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 23083
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 23084 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 23128
Score = 69.9 bits (35), Expect = 2e-009
Identities = 94/113 (83%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| |
Sbjct: 24846 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 24905
Query: 785 agcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
|||||| | ||||||||||| || |||||||| |||||||||||||||
Sbjct: 24906 agcgccgttggggccttcttcttctccacctccgtgttgctccccatcgccgc 24958
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 24648 cctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcacttg 24707
Query: 707 gcctc 711
|||||
Sbjct: 24708 gcctc 24712
>gb|AACV01005331.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005331, whole
genome shotgun sequence
Length = 36609
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 36062 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 36121
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 36122 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 36167
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 35143 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 35202
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 35203 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 35262
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 35263 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 35307
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 5508022 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 5508081
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 5508082 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 5508127
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 5507103 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 5507162
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 5507163 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 5507222
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 5507223 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 5507267
Score = 69.9 bits (35), Expect = 2e-009
Identities = 94/113 (83%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| |
Sbjct: 5508985 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 5509044
Query: 785 agcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
|||||| | ||||||||||| || |||||||| |||||||||||||||
Sbjct: 5509045 agcgccgttggggccttcttcttctccacctccgtgttgctccccatcgccgc 5509097
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 5508787 cctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcacttg 5508846
Query: 707 gcctc 711
|||||
Sbjct: 5508847 gcctc 5508851
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 16835249 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 16835308
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 16835309 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 16835354
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 16834330 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 16834389
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 16834390 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 16834449
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 16834450 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 16834494
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 665 atgctcttgactacctctttgactccgcgcttgaggcacttcgcctc 711
||||||||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct: 16836812 atgctcttgaccacctccttgactccccgcttcaggcacttggcctc 16836858
Score = 46.1 bits (23), Expect = 0.032
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatgg 779
|||||||| ||||| |||||||||||||| || || |||| || ||||||||||
Sbjct: 16836993 acgagcttaagggttcgcttgcagagctttttgccggcgaaaggcttcgcgatgg 16837047
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 30288313 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 30288372
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 30288373 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 30288418
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 30287394 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 30287453
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 30287454 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 30287513
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 30287514 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 30287558
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 665 atgctcttgactacctctttgactccgcgcttgaggcacttcgcctc 711
||||||||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct: 30289876 atgctcttgaccacctccttgactccccgcttcaggcacttggcctc 30289922
Score = 46.1 bits (23), Expect = 0.032
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatgg 779
|||||||| ||||| |||||||||||||| || || |||| || ||||||||||
Sbjct: 30290057 acgagcttaagggttcgcttgcagagctttttgccggcgaaaggcttcgcgatgg 30290111
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 139 bits (70), Expect = 3e-030
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||||||||| ||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct: 30343023 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 30343082
Query: 600 gtgtaatcacatcaataggagaaatatttccagcgatcacacacaa 645
||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 30343083 gtgtaatcacatcgataggagaaatattcccagcaattacacacaa 30343128
Score = 121 bits (61), Expect = 7e-025
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 30342104 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 30342163
Query: 438 tcagtttatccttcacctctccactgagctcccccttgtttggtttggtcagaaccaaga 497
||||||| |||||||||||| || ||| |||||||||| || ||||||| ||||| ||
Sbjct: 30342164 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 30342223
Query: 498 cgcaacaagtcggcctcttagtggttcctgcggtcgcaagatcct 542
||||||| || ||||||||||| || || || || ||||||||||
Sbjct: 30342224 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcct 30342268
Score = 69.9 bits (35), Expect = 2e-009
Identities = 94/113 (83%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| |
Sbjct: 30343986 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 30344045
Query: 785 agcgccaccgaggccttcttct---ccgtctccgtgtcgctccccatcgccgc 834
|||||| | ||||||||||| || |||||||| |||||||||||||||
Sbjct: 30344046 agcgccgttggggccttcttcttctccacctccgtgttgctccccatcgccgc 30344098
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 647 cctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcacttc 706
||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 30343788 cctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcacttg 30343847
Query: 707 gcctc 711
|||||
Sbjct: 30343848 gcctc 30343852
>gb|D15191.1|D15191 RICC0235A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0235A, mRNA sequence
Length = 335
Score = 129 bits (65), Expect = 3e-027
Identities = 192/233 (82%), Gaps = 1/233 (0%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaag-acgcaacaagtcggcctcttagtggt 522
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 233 agctcgcccttggctggcttggtcagaaccaattacacaacaggtaggcctcttggtagt 174
Query: 523 tcctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctc 582
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 173 cccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttc 114
Query: 583 acatagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacaca 642
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | ||
Sbjct: 113 gcaaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgca 54
Query: 643 caatcctttgttcccgcggcgaatgctcttgactacctctttgactccgcgct 695
||||||||| | ||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 53 caatcctttctgcccgcggcggatgctcttgacgacctccttgactcctcgct 1
>gb|C28333.1|C28333 C28333 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60728_1A, mRNA sequence
Length = 459
Score = 119 bits (60), Expect = 3e-024
Identities = 171/208 (82%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctcttagtggtt 523
||||| |||||| ||| |||||||||||||| || ||||| || |||||||| || ||
Sbjct: 208 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtc 149
Query: 524 cctgcggtcgcaagatcctcttttgatggaacatatacgtaaggaacattagcttcctca 583
|| || || || ||||||||||| || ||||||||||| ||||||| || ||||| ||
Sbjct: 148 ccagctgttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcg 89
Query: 584 catagtatcggaacatgtgtaatcacatcaataggagaaatatttccagcgatcacacac 643
|| || || ||||||||||| ||||||||||| |||||||| || ||||| || | |||
Sbjct: 88 caaaggatgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcac 29
Query: 644 aatcctttgttcccgcggcgaatgctct 671
|||||||| | ||||||||| |||||||
Sbjct: 28 aatcctttctgcccgcggcggatgctct 1
>gb|CF315218.1|CF315218 HD--04-A22.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--04-A22, mRNA sequence
Length = 502
Score = 91.7 bits (46), Expect = 6e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 378 ctcagaacattgcagatgtagcctcagcgacttccgttacaacttggtcatagtccgact 437
|||||||||||| ||||||| |||| || ||||| | |||||| ||||| ||||| ||||
Sbjct: 387 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 446
Query: 438 tcagtttatccttcacctctccactgagctcccccttg 475
||||||| |||||||||||| || ||| ||||||||||
Sbjct: 447 tcagtttctccttcacctcttcattgatctcccccttg 484
>gb|AACV01013542.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013542, whole
genome shotgun sequence
Length = 35159
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 21330 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 21271
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 21270 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 21223
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 21862 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 21803
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 21802 gtgttatcacatcaatgggagaaatgttgccagc 21769
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 21506 cccgcggcggatgctcttgacgacctccttgactcctcgctt 21465
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 22886 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 22834
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0038C05
Length = 152941
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 22595 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 22536
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 22535 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 22488
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 23127 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 23068
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 23067 gtgttatcacatcaatgggagaaatgttgccagc 23034
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 22771 cccgcggcggatgctcttgacgacctccttgactcctcgctt 22730
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 24151 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 24099
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0676F10
Length = 142510
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 61526 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 61467
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 61466 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 61419
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 62058 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 61999
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 61998 gtgttatcacatcaatgggagaaatgttgccagc 61965
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 61702 cccgcggcggatgctcttgacgacctccttgactcctcgctt 61661
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 63082 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 63030
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 4985765 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 4985706
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 4985705 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 4985658
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 4986297 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 4986238
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 4986237 gtgttatcacatcaatgggagaaatgttgccagc 4986204
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 4985941 cccgcggcggatgctcttgacgacctccttgactcctcgctt 4985900
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 4987321 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 4987269
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 707021 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 706962
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 706961 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 706914
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 707553 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 707494
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 707493 gtgttatcacatcaatgggagaaatgttgccagc 707460
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 707197 cccgcggcggatgctcttgacgacctccttgactcctcgctt 707156
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 708577 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 708525
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 9314673 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 9314614
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 9314613 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 9314566
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 9315205 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 9315146
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 9315145 gtgttatcacatcaatgggagaaatgttgccagc 9315112
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 9314849 cccgcggcggatgctcttgacgacctccttgactcctcgctt 9314808
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 9316229 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 9316177
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 83.8 bits (42), Expect = 1e-013
Identities = 92/108 (85%), Gaps = 3/108 (2%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatggacatc 784
|||||||||||||| ||||||||||||||||| || ||||| || |||||||||| | |
Sbjct: 9294185 acgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcgatgggcgcc 9294126
Query: 785 agcgccac---cgaggccttcttctccgtctccgtgtcgctccccatc 829
|||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 9294125 agcgccacgggcgtcttcttcttctccgcctccgtgtcgctccccatc 9294078
Score = 67.9 bits (34), Expect = 9e-009
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 540 cctcttttgatggaacatatacgtaaggaacattagcttcctcacatagtatcggaacat 599
||||||| || ||||||||||| ||||||| || ||||| || || || || |||||||
Sbjct: 9294717 cctctttcgacggaacatatacataaggaatgttggcttcttcgcaaaggatgggaacat 9294658
Query: 600 gtgtaatcacatcaataggagaaatatttccagc 633
|||| ||||||||||| |||||||| || |||||
Sbjct: 9294657 gtgttatcacatcaatgggagaaatgttgccagc 9294624
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 655 cccgcggcgaatgctcttgactacctctttgactccgcgctt 696
||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 9294361 cccgcggcggatgctcttgacgacctccttgactcctcgctt 9294320
Score = 42.1 bits (21), Expect = 0.50
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 464 agctcccccttgtttggtttggtcagaaccaagacgcaacaagtcggcctctt 516
||||| |||||| ||| |||||||||||||| || ||||| || ||||||||
Sbjct: 9295741 agctcgcccttggctggcttggtcagaaccaatacacaacaggtaggcctctt 9295689
>gb|AACV01005332.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005332, whole
genome shotgun sequence
Length = 3077
Score = 54.0 bits (27), Expect = 1e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 665 atgctcttgactacctctttgactccgcgcttgaggcacttcgcctc 711
||||||||||| ||||| |||||||| ||||| |||||||| |||||
Sbjct: 3062 atgctcttgaccacctccttgactccccgcttcaggcacttggcctc 3016
Score = 46.1 bits (23), Expect = 0.032
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 725 acgagcttgagggtccgcttgcagagcttctttccagcgaggggtttcgcgatgg 779
|||||||| ||||| |||||||||||||| || || |||| || ||||||||||
Sbjct: 2881 acgagcttaagggttcgcttgcagagctttttgccggcgaaaggcttcgcgatgg 2827
>gb|CB665649.1|CB665649 OSJNEd12D03.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd12D03 5', mRNA sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 64 ctccccatcgccgccgccgcc 84
>dbj|AK060393.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A11, full
insert sequence
Length = 1576
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 38 ctccccatcgccgccgccgcc 58
>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full
insert sequence
Length = 2221
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 26 ctccccatcgccgccgccgcc 46
>dbj|AK101134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026G01, full
insert sequence
Length = 1570
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 34 ctccccatcgccgccgccgcc 54
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0498E12
Length = 153523
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 47679 ctccccatcgccgccgccgcc 47699
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
complete sequence
Length = 111961
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 6435 ctccccatcgccgccgccgcc 6455
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0085F02, complete sequence
Length = 128535
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 97522 ctccccatcgccgccgccgcc 97542
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0042F15, complete sequence
Length = 162959
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 51102 ctccccatcgccgccgccgcc 51082
>gb|AACV01006099.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006099, whole
genome shotgun sequence
Length = 43449
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 34461 ctccccatcgccgccgccgcc 34481
>gb|AACV01011307.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011307, whole
genome shotgun sequence
Length = 26355
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 9942 ctccccatcgccgccgccgcc 9922
>gb|AACV01017324.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017324, whole
genome shotgun sequence
Length = 14577
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 4690 ctccccatcgccgccgccgcc 4710
>ref|XM_480193.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1572
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 34 ctccccatcgccgccgccgcc 54
>ref|NT_107189.1| Oryza sativa (japonica cultivar-group)
Length = 1905944
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 1111446 ctccccatcgccgccgccgcc 1111466
>ref|NT_107226.1| Oryza sativa (japonica cultivar-group)
Length = 1041917
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 604493 ctccccatcgccgccgccgcc 604473
>ref|XM_507137.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.110 mRNA
Length = 1578
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 40 ctccccatcgccgccgccgcc 60
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 3181786 ctccccatcgccgccgccgcc 3181806
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 3340062 ctccccatcgccgccgccgcc 3340082
>gb|CH401195.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000032
genomic scaffold, whole genome shotgun sequence
Length = 1766531
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 45492 ctccccatcgccgccgccgcc 45472
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 5981516 ctccccatcgccgccgccgcc 5981536
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 3340062 ctccccatcgccgccgccgcc 3340082
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 8846769 ctccccatcgccgccgccgcc 8846749
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 6173878 ctccccatcgccgccgccgcc 6173898
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 42.1 bits (21), Expect = 0.50
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 821 ctccccatcgccgccgccgcc 841
|||||||||||||||||||||
Sbjct: 5947113 ctccccatcgccgccgccgcc 5947133
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,911,211
Number of Sequences: 438736
Number of extensions: 1911211
Number of successful extensions: 24712
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23785
Number of HSP's gapped (non-prelim): 915
length of query: 878
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 857
effective length of database: 2,791,206,460
effective search space: 2392063936220
effective search space used: 2392063936220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)