BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY557602.1| Medicago truncatula cultivar Jemalong core a... 52 4e-005
gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKIN... 52 4e-005
emb|AJ416755.1|MTR416755 Medicago truncatula partial mRNA f... 46 0.002
gb|AW688393.1|AW688393 NF006H04ST1F1000 Developing stem Med... 38 0.53
gb|AW775438.1|AW775438 EST334503 DSIL Medicago truncatula c... 38 0.53
gb|BF006155.1|BF006155 EST434590 DSLC Medicago truncatula c... 38 0.53
gb|BG450203.1|BG450203 NF014B03DT1F1029 Drought Medicago tr... 38 0.53
gb|BE320756.2|BE320756 NF028B08RT1F1061 Developing root Med... 36 2.1
gb|AC148304.3| Medicago truncatula clone mth2-21b19, comple... 36 2.1
gb|AC135414.31| Medicago truncatula clone mth2-8n20, comple... 36 2.1
gb|AC147009.5| Medicago truncatula clone mth2-139j3, comple... 36 2.1
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 36 2.1
emb|CR310350.1| mte1-31N6FM1 BAC end, cultivar Jemalong A17... 34 8.3
gb|AL387184.1|AL387184 MtBC40H06R1 MtBC Medicago truncatula... 34 8.3
gb|BQ124944.1|BQ124944 EST610520 GLSD Medicago truncatula c... 34 8.3
gb|BQ148073.1|BQ148073 NF058D09FL1F1078 Developing flower M... 34 8.3
gb|AJ845347.1|AJ845347 AJ845347 MtSNF Medicago truncatula c... 34 8.3
gb|CX530241.1|CX530241 s13dNF54B04MJ030_246517 Methyl Jasmo... 34 8.3
gb|CX532710.1|CX532710 s13dNF45G11MJ084_271703 Methyl Jasmo... 34 8.3
emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1... 34 8.3
gb|AC147472.17| Medicago truncatula clone mth2-24n18, compl... 34 8.3
emb|CR940306.3| M.truncatula DNA sequence from clone MTH2-1... 34 8.3
gb|AC145289.45| Medicago truncatula clone mth2-7g18, WORKIN... 34 8.3
emb|CT009490.7| M.truncatula DNA sequence from clone MTH2-1... 34 8.3
gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone m... 34 8.3
gb|AC151461.16| Medicago truncatula clone mth2-39h15, WORKI... 34 8.3
>gb|AY557602.1| Medicago truncatula cultivar Jemalong core alpha
1,3-fucosyltransferase (FUT2) gene, complete cds
Length = 3124
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
||||| || ||||||||||| || |||||||| || | ||| || ||||| |||||||||
Sbjct: 2264 caaaggcggcaagatgaatgtacagctgccatatccacaagggccttgaaggaatcagat 2205
Query: 381 ggaccatcatactt 394
|| || ||||||||
Sbjct: 2204 ggcccttcatactt 2191
>gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKING DRAFT SEQUENCE, 16
unordered pieces
Length = 124356
Score = 52.0 bits (26), Expect = 4e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
||||| || ||||||||||| || |||||||| || | ||| || ||||| |||||||||
Sbjct: 92933 caaaggcggcaagatgaatgtacagctgccatatccacaagggccttgaaggaatcagat 92992
Query: 381 ggaccatcatactt 394
|| || ||||||||
Sbjct: 92993 ggcccttcatactt 93006
>emb|AJ416755.1|MTR416755 Medicago truncatula partial mRNA for alpha1,3-fucosyltransferase
(fuct3 gene)
Length = 658
Score = 46.1 bits (23), Expect = 0.002
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
||||| || ||||||||||| || | |||||| || | ||| || ||||| |||||||||
Sbjct: 609 caaaggcggcaagatgaatgtacagntgccatatccacaagggccttgaaggaatcagat 550
Query: 381 ggaccatcatactt 394
|| || ||||||||
Sbjct: 549 ggcccttcatactt 536
>gb|AW688393.1|AW688393 NF006H04ST1F1000 Developing stem Medicago truncatula cDNA clone
NF006H04ST 5', mRNA sequence
Length = 678
Score = 38.2 bits (19), Expect = 0.53
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 356 gataagagctttgaaagaa 374
|||||||||||||||||||
Sbjct: 28 gataagagctttgaaagaa 46
>gb|AW775438.1|AW775438 EST334503 DSIL Medicago truncatula cDNA clone pDSIL-1F12, mRNA
sequence
Length = 698
Score = 38.2 bits (19), Expect = 0.53
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 356 gataagagctttgaaagaa 374
|||||||||||||||||||
Sbjct: 262 gataagagctttgaaagaa 280
>gb|BF006155.1|BF006155 EST434590 DSLC Medicago truncatula cDNA clone pDSLC-39J9, mRNA
sequence
Length = 490
Score = 38.2 bits (19), Expect = 0.53
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 356 gataagagctttgaaagaa 374
|||||||||||||||||||
Sbjct: 207 gataagagctttgaaagaa 225
>gb|BG450203.1|BG450203 NF014B03DT1F1029 Drought Medicago truncatula cDNA clone NF014B03DT
5', mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.53
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 356 gataagagctttgaaagaa 374
|||||||||||||||||||
Sbjct: 159 gataagagctttgaaagaa 177
>gb|BE320756.2|BE320756 NF028B08RT1F1061 Developing root Medicago truncatula cDNA clone
NF028B08RT 5', mRNA sequence
Length = 280
Score = 36.2 bits (18), Expect = 2.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 371 agaatcagatggaccatcatac 392
||||||||||||| ||||||||
Sbjct: 272 agaatcagatggatcatcatac 251
>gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete sequence
Length = 110520
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagt 280
||||||||||||||||||
Sbjct: 81981 atttgtaaattttggagt 81964
>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence
Length = 127018
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 263 atttgtaaattttggagt 280
||||||||||||||||||
Sbjct: 4349 atttgtaaattttggagt 4332
>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence
Length = 125303
Score = 36.2 bits (18), Expect = 2.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 263 atttgtaaattttggagt 280
||||||||||||||||||
Sbjct: 122668 atttgtaaattttggagt 122685
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 36.2 bits (18), Expect = 2.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 262 gatttgtaaattttggagtcctttcc 287
|||||| |||| ||||||||||||||
Sbjct: 160721 gatttggaaatcttggagtcctttcc 160746
>emb|CR310350.1| mte1-31N6FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 690
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 359 aagagctttgaaagaat 375
|||||||||||||||||
Sbjct: 105 aagagctttgaaagaat 89
>gb|AL387184.1|AL387184 MtBC40H06R1 MtBC Medicago truncatula cDNA clone MtBC40H06 T7, mRNA
sequence
Length = 391
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 acaagtggtaaactgtc 233
|||||||||||||||||
Sbjct: 328 acaagtggtaaactgtc 312
>gb|BQ124944.1|BQ124944 EST610520 GLSD Medicago truncatula cDNA clone pGLSD-37N19, mRNA
sequence
Length = 800
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 291 tttaaatgaatcttggt 307
|||||||||||||||||
Sbjct: 342 tttaaatgaatcttggt 358
>gb|BQ148073.1|BQ148073 NF058D09FL1F1078 Developing flower Medicago truncatula cDNA clone
NF058D09FL 5', mRNA sequence
Length = 652
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 72 ctcggtggcctttcatc 88
|||||||||||||||||
Sbjct: 68 ctcggtggcctttcatc 52
>gb|AJ845347.1|AJ845347 AJ845347 MtSNF Medicago truncatula cDNA clone MtNF02L10N1, mRNA
sequence
Length = 624
Score = 34.2 bits (17), Expect = 8.3
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 329 acaagatgaatgaaccgctgc 349
||||||||||| |||||||||
Sbjct: 586 acaagatgaattaaccgctgc 606
>gb|CX530241.1|CX530241 s13dNF54B04MJ030_246517 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 614
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 377 agatggaccatcatact 393
|||||||||||||||||
Sbjct: 194 agatggaccatcatact 178
>gb|CX532710.1|CX532710 s13dNF45G11MJ084_271703 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 595
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 217 acaagtggtaaactgtc 233
|||||||||||||||||
Sbjct: 46 acaagtggtaaactgtc 62
>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
Length = 149149
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 gttgtgttagaccgact 29
|||||||||||||||||
Sbjct: 80172 gttgtgttagaccgact 80156
>gb|AC147472.17| Medicago truncatula clone mth2-24n18, complete sequence
Length = 133272
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 306 gtagcaatatgtataca 322
|||||||||||||||||
Sbjct: 18138 gtagcaatatgtataca 18154
>emb|CR940306.3| M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3,
complete sequence
Length = 90977
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 306 gtagcaatatgtataca 322
|||||||||||||||||
Sbjct: 16483 gtagcaatatgtataca 16467
>gb|AC145289.45| Medicago truncatula clone mth2-7g18, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 119912
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 377 agatggaccatcatact 393
|||||||||||||||||
Sbjct: 72291 agatggaccatcatact 72307
>emb|CT009490.7| M.truncatula DNA sequence from clone MTH2-174P8 on chromosome 3,
complete sequence
Length = 107411
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 217 acaagtggtaaactgtc 233
|||||||||||||||||
Sbjct: 46378 acaagtggtaaactgtc 46394
>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete
sequence
Length = 116124
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 291 tttaaatgaatcttggt 307
|||||||||||||||||
Sbjct: 41157 tttaaatgaatcttggt 41141
>gb|AC151461.16| Medicago truncatula clone mth2-39h15, WORKING DRAFT SEQUENCE, 6
unordered pieces
Length = 106520
Score = 34.2 bits (17), Expect = 8.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 288 tcctttaaatgaatctt 304
|||||||||||||||||
Sbjct: 42259 tcctttaaatgaatctt 42275
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,903
Number of Sequences: 392609
Number of extensions: 94903
Number of successful extensions: 6610
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6567
Number of HSP's gapped (non-prelim): 43
length of query: 394
length of database: 441,732,993
effective HSP length: 19
effective length of query: 375
effective length of database: 434,273,422
effective search space: 162852533250
effective search space used: 162852533250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)