BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Med... 84 2e-014
gb|BM779676.1|BM779676 EST590252 KV2 Medicago truncatula cD... 84 2e-014
gb|BM779758.1|BM779758 EST590334 KV2 Medicago truncatula cD... 84 2e-014
gb|AC144657.6| Medicago truncatula clone mth2-16a6, complet... 84 2e-014
gb|AC144540.6| Medicago truncatula clone mth2-19p16, comple... 84 2e-014
gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDN... 80 3e-013
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 48 0.001
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 48 0.001
>gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF052A09ST 5', mRNA sequence
Length = 603
Score = 83.8 bits (42), Expect = 2e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 373 attgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaattgat 432
|||||||||||||||||||||| | | ||||| | |||| ||||||||| ||||||
Sbjct: 205 attgatgaaatgtcaagcacaagttcttctgttcttctctcagtactcaagttgattgat 264
Query: 433 aaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaagttcct 492
|| ||||| || ||||| ||||||||||| || || ||||| || |||||||| ||||||
Sbjct: 265 aagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcct 324
Query: 493 gatatttatcgtttagctgcga 514
|| || |||||| |||| ||||
Sbjct: 325 gaaatatatcgtctagcagcga 346
Score = 79.8 bits (40), Expect = 3e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 192 agatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgat 251
|||||||||||||||| |||| |||||||| ||||| ||||||| || ||||| ||||
Sbjct: 24 agatccacctatttggtctgagataatgcggttctttacaaaccctcgcaagcctgtgat 83
Query: 252 tcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttgg 311
||||||||||| | || ||||| |||||||| ||||| ||| | || |||||||||||
Sbjct: 84 acttgctcttgccagaccagatcctaagaagaacatcacaactttggtgaaagcatttgg 143
>gb|BM779676.1|BM779676 EST590252 KV2 Medicago truncatula cDNA clone pKV2-52B16, mRNA
sequence
Length = 768
Score = 83.8 bits (42), Expect = 2e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 373 attgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaattgat 432
|||||||||||||||||||||| | | ||||| | |||| ||||||||| ||||||
Sbjct: 56 attgatgaaatgtcaagcacaagttcttctgttcttctctcagtactcaagttgattgat 115
Query: 433 aaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaagttcct 492
|| ||||| || ||||| ||||||||||| || || ||||| || |||||||| ||||||
Sbjct: 116 aagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcct 175
Query: 493 gatatttatcgtttagctgcga 514
|| || |||||| |||| ||||
Sbjct: 176 gaaatatatcgtctagcagcga 197
>gb|BM779758.1|BM779758 EST590334 KV2 Medicago truncatula cDNA clone pKV2-53A3, mRNA
sequence
Length = 791
Score = 83.8 bits (42), Expect = 2e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 373 attgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaattgat 432
|||||||||||||||||||||| | | ||||| | |||| ||||||||| ||||||
Sbjct: 78 attgatgaaatgtcaagcacaagttcttctgttcttctctcagtactcaagttgattgat 137
Query: 433 aaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaagttcct 492
|| ||||| || ||||| ||||||||||| || || ||||| || |||||||| ||||||
Sbjct: 138 aagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcct 197
Query: 493 gatatttatcgtttagctgcga 514
|| || |||||| |||| ||||
Sbjct: 198 gaaatatatcgtctagcagcga 219
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
Length = 92738
Score = 83.8 bits (42), Expect = 2e-014
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 373 attgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaattgat 432
|||||||||||||||||||||| | | ||||| | |||| ||||||||| ||||||
Sbjct: 53596 attgatgaaatgtcaagcacaagttcttctgttcttctctcagtactcaagttgattgat 53655
Query: 433 aaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaagttcct 492
|| ||||| || ||||| ||||||||||| || || ||||| || |||||||| ||||||
Sbjct: 53656 aagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcct 53715
Query: 493 gatatttatcgtttagctgcga 514
|| || |||||| |||| ||||
Sbjct: 53716 gaaatatatcgtctagcagcga 53737
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| ||||| ||||||| || ||||| |||| ||||||||||| | || |||
Sbjct: 53318 ataatgcggttctttacaaaccctcgcaagcctgtgatacttgctcttgccagaccagat 53377
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311
|| |||||||| ||||| ||| | || |||||||||||
Sbjct: 53378 cctaagaagaacatcacaactttggtgaaagcatttgg 53415
>gb|AC144540.6| Medicago truncatula clone mth2-19p16, complete sequence
Length = 78738
Score = 83.8 bits (42), Expect = 2e-014
Identities = 117/142 (82%)
Strand = Plus / Minus
Query: 373 attgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaattgat 432
|||||||||||||||||||||| | | ||||| | |||| ||||||||| ||||||
Sbjct: 57246 attgatgaaatgtcaagcacaagttcttctgttcttctctcagtactcaagttgattgat 57187
Query: 433 aaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaagttcct 492
|| ||||| || ||||| ||||||||||| || || ||||| || |||||||| ||||||
Sbjct: 57186 aagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcct 57127
Query: 493 gatatttatcgtttagctgcga 514
|| || |||||| |||| ||||
Sbjct: 57126 gaaatatatcgtctagcagcga 57105
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| ||||| ||||||| || ||||| |||| ||||||||||| | || |||
Sbjct: 57524 ataatgcggttctttacaaaccctcgcaagcctgtgatacttgctcttgccagaccagat 57465
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311
|| |||||||| ||||| ||| | || |||||||||||
Sbjct: 57464 cctaagaagaacatcacaactttggtgaaagcatttgg 57427
>gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDNA clone pKV0-1N5, mRNA sequence
Length = 399
Score = 79.8 bits (40), Expect = 3e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 192 agatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgat 251
|||||||||||||||| |||| |||||||| ||||| ||||||| || ||||| ||||
Sbjct: 207 agatccacctatttggtctgagataatgcggttctttacaaaccctcgcaagcctgtgat 266
Query: 252 tcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttgg 311
||||||||||| | || ||||| |||||||| ||||| ||| | || |||||||||||
Sbjct: 267 acttgctcttgccagaccagatcctaagaagaacatcacaactttggtgaaagcatttgg 326
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 421 aagttaattgataaatatgatctatatggacaagtggcataccc 464
||||| |||||||| ||||| || ||||||||||| ||||||||
Sbjct: 114323 aagttgattgataagtatgacctctatggacaagttgcataccc 114280
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 421 aagttaattgataaatatgatctatatggacaagtggcataccc 464
||||| |||||||| ||||| || ||||||||||| ||||||||
Sbjct: 59511 aagttgattgataagtatgacctctatggacaagttgcataccc 59554
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,840
Number of Sequences: 392609
Number of extensions: 170840
Number of successful extensions: 13624
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13584
Number of HSP's gapped (non-prelim): 40
length of query: 683
length of database: 441,732,993
effective HSP length: 19
effective length of query: 664
effective length of database: 434,273,422
effective search space: 288357552208
effective search space used: 288357552208
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)