BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM14d12.yg.2.1
(593 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-... 90 2e-016
gb|AC137522.10| Medicago truncatula clone mth2-9h8, complet... 90 2e-016
emb|CR312203.1| mte1-34N7FM1 BAC end, cultivar Jemalong A17... 76 4e-012
gb|AC125473.12| Medicago truncatula clone mth2-8j13, comple... 76 4e-012
gb|AC126014.6| Medicago truncatula clone mth2-18j5, complet... 76 4e-012
gb|BG644386.1|BG644386 EST506005 KV3 Medicago truncatula cD... 74 1e-011
emb|CR306283.1| mte1-26F7FM1 BAC end, cultivar Jemalong A17... 62 6e-008
emb|CR307546.1| mte1-28F15RM1 BAC end, cultivar Jemalong A1... 62 6e-008
emb|CR317178.1| mte1-41F19RM1 BAC end, cultivar Jemalong A1... 62 6e-008
gb|BF632800.1|BF632800 NF044F08DT1F1075 Drought Medicago tr... 58 9e-007
gb|AC148289.2| Medicago truncatula chromosome 7 BAC clone m... 54 1e-005
gb|AW774442.1|AW774442 EST333593 KV3 Medicago truncatula cD... 48 8e-004
emb|CR321492.1| mte1-48C14RM1 BAC end, cultivar Jemalong A1... 46 0.003
gb|BE322406.1|BE322406 NF020G01IN1F1005 Insect herbivory Me... 46 0.003
gb|AW697481.2|AW697481 NF099A09ST1F1068 Developing stem Med... 46 0.003
gb|BG447868.1|BG447868 NF103D10EC1F1080 Elicited cell cultu... 46 0.003
gb|CB892743.1|CB892743 EST645535 HOGA Medicago truncatula c... 46 0.003
gb|AW691888.1|AW691888 NF045B10ST1F1000 Developing stem Med... 44 0.013
gb|BI308014.1|BI308014 EST529424 GPOD Medicago truncatula c... 44 0.013
gb|BI308645.1|BI308645 EST530055 GPOD Medicago truncatula c... 44 0.013
gb|BQ148943.1|BQ148943 NF084F04FL1F1043 Developing flower M... 44 0.013
gb|CA916873.1|CA916873 EST641020 GPOD Medicago truncatula c... 44 0.013
gb|CA918099.1|CA918099 EST642246 GPOD Medicago truncatula c... 44 0.013
gb|CF068936.1|CF068936 EST669657 MTUS Medicago truncatula c... 44 0.013
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 44 0.013
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 44 0.013
gb|AW688376.1|AW688376 NF006F09ST1F1000 Developing stem Med... 40 0.21
gb|BF644570.1|BF644570 NF063C08EC1F1065 Elicited cell cultu... 40 0.21
gb|AW693875.2|AW693875 NF070A05ST1F1036 Developing stem Med... 40 0.21
gb|AW690834.2|AW690834 NF039E09ST1F1000 Developing stem Med... 40 0.21
gb|BG454325.1|BG454325 NF110E08LF1F1056 Developing leaf Med... 40 0.21
gb|CB892280.1|CB892280 EST649249 KV3 Medicago truncatula cD... 40 0.21
gb|CB894714.1|CB894714 EST647506 HOGA Medicago truncatula c... 40 0.21
>gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-80k8, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 122271
Score = 89.7 bits (45), Expect = 2e-016
Identities = 141/173 (81%)
Strand = Plus / Minus
Query: 352 agatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttc 411
|||||||| || |||||| | ||||||||||| || || || ||||| || || | ||||
Sbjct: 109227 agatagtccatcttctgaccgaaataccattctggggcacggggctcaatattatatttc 109168
Query: 412 ttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagta 471
|| || || |||||||| || | |||||| | |||| || | |||||||||||||||
Sbjct: 109167 ttgcaaaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttcaaaagtt 109108
Query: 472 agcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggata 524
||||| ||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct: 109107 agcatagcagcaccatcatccgaaacatagcatgcaactttatcaactggata 109055
>gb|AC137522.10| Medicago truncatula clone mth2-9h8, complete sequence
Length = 117716
Score = 89.7 bits (45), Expect = 2e-016
Identities = 141/173 (81%)
Strand = Plus / Plus
Query: 352 agatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttc 411
|||||||| || |||||| | ||||||||||| || || || ||||| || || | ||||
Sbjct: 96476 agatagtccatcttctgaccgaaataccattctggggcacggggctcaatattatatttc 96535
Query: 412 ttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagta 471
|| || || |||||||| || | |||||| | |||| || | |||||||||||||||
Sbjct: 96536 ttgcaaaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttcaaaagtt 96595
Query: 472 agcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggata 524
||||| ||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct: 96596 agcatagcagcaccatcatccgaaacatagcatgcaactttatcaactggata 96648
>emb|CR312203.1| mte1-34N7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 793
Score = 75.8 bits (38), Expect = 4e-012
Identities = 178/226 (78%)
Strand = Plus / Minus
Query: 350 ttagatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtt 409
|||||||||||| ||||||||||||||||| ||||||||||| || || || || |
Sbjct: 459 ttagatagtcaaccttctgagcaaaataccactcaggagcccgcggttcaatgctgaact 400
Query: 410 tcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaag 469
|||| ||||| ||||||||||||| |||||| | ||||||| ||| |||||||| |
Sbjct: 399 tcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatg 340
Query: 470 taagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnna 529
| ||||| || ||||| || || || |||||||| ||||| || || ||||||| |
Sbjct: 339 ttagcatagctgcaccgtcgtctgagacatagcacgccactttttccaccggataatcta 280
Query: 530 cagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
| || || ||||||| |||||||| |||| | || | |||||||||
Sbjct: 279 ctgctaggatggacagaactgtgtttgcagttataagaggaggctc 234
>gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete sequence
Length = 103966
Score = 75.8 bits (38), Expect = 4e-012
Identities = 178/226 (78%)
Strand = Plus / Plus
Query: 350 ttagatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtt 409
|||||||||||| ||||||||||||||||| ||||||||||| || || || || |
Sbjct: 10860 ttagatagtcaaccttctgagcaaaataccactcaggagcccgcggttcaatgctgaact 10919
Query: 410 tcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaag 469
|||| ||||| ||||||||||||| |||||| | ||||||| ||| |||||||| |
Sbjct: 10920 tcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatg 10979
Query: 470 taagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnna 529
| ||||| || ||||| || || || |||||||| ||||| || || ||||||| |
Sbjct: 10980 ttagcatagctgcaccgtcgtctgagacatagcacgccactttttccaccggataatcta 11039
Query: 530 cagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
| || || ||||||| |||||||| |||| | || | |||||||||
Sbjct: 11040 ctgctaggatggacagaactgtgtttgcagttataagaggaggctc 11085
>gb|AC126014.6| Medicago truncatula clone mth2-18j5, complete sequence
Length = 113200
Score = 75.8 bits (38), Expect = 4e-012
Identities = 178/226 (78%)
Strand = Plus / Minus
Query: 350 ttagatagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtt 409
|||||||||||| ||||||||||||||||| ||||||||||| || || || || |
Sbjct: 88779 ttagatagtcaaccttctgagcaaaataccactcaggagcccgcggttcaatgctgaact 88720
Query: 410 tcttacagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaag 469
|||| ||||| ||||||||||||| |||||| | ||||||| ||| |||||||| |
Sbjct: 88719 tcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatg 88660
Query: 470 taagcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggataatnna 529
| ||||| || ||||| || || || |||||||| ||||| || || ||||||| |
Sbjct: 88659 ttagcatagctgcaccgtcgtctgagacatagcacgccactttttccaccggataatcta 88600
Query: 530 cagcnagtatggacaaaactgtgtntgcaataattaaaggaggctc 575
| || || ||||||| |||||||| |||| | || | |||||||||
Sbjct: 88599 ctgctaggatggacagaactgtgtttgcagttataagaggaggctc 88554
>gb|BG644386.1|BG644386 EST506005 KV3 Medicago truncatula cDNA clone pKV3-37K9 5' end, mRNA
sequence
Length = 658
Score = 73.8 bits (37), Expect = 1e-011
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagcagcaaactttatcaaca 519
|||||||| || |||||||| | ||||||||| ||||||||||| | || || || |||
Sbjct: 413 gcttcaaacgttagcattgctgaaccatcatctgacacatagcatgagaccttgtccaca 354
Query: 520 ggataatnnacagcnagtatggacaaaactgtgtntgcaataattaaaggagg 572
||||||| ||||| || |||||||| ||||||| |||| |||| | ||||||
Sbjct: 353 ggataatcaacagcaaggatggacaacactgtgtttgcagtaatgagaggagg 301
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 367 tgagcaaaataccattcaggagcccgaggctcgattttgtgtttcttacagaagggaacc 426
||||||||||| ||||||| ||||||||||| || || |||||| ||||||||||||
Sbjct: 506 tgagcaaaataaaattcaggggcccgaggctcaatgctgaatttcttgcagaagggaacc 447
Query: 427 cat 429
|||
Sbjct: 446 cat 444
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 283 ttaaattcttcgtattctctcttcattgc 311
||||||||||| ||||| |||||||||||
Sbjct: 590 ttaaattcttcatattccctcttcattgc 562
>emb|CR306283.1| mte1-26F7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 711
Score = 61.9 bits (31), Expect = 6e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagc 502
||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 423 gcttcaaaagtgagcatagcagcaccatcatccgagacatagc 465
>emb|CR307546.1| mte1-28F15RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 730
Score = 61.9 bits (31), Expect = 6e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagc 502
||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 407 gcttcaaaagtgagcatagcagcaccatcatccgagacatagc 449
>emb|CR317178.1| mte1-41F19RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 809
Score = 61.9 bits (31), Expect = 6e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 460 gcttcaaaagtaagcattgcagcaccatcatccgacacatagc 502
||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 407 gcttcaaaagtgagcatagcagcaccatcatccgagacatagc 449
>gb|BF632800.1|BF632800 NF044F08DT1F1075 Drought Medicago truncatula cDNA clone NF044F08DT
5', mRNA sequence
Length = 534
Score = 58.0 bits (29), Expect = 9e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 283 ttaaattcttcgtattctctcttcattgc 311
|||||||||||||||||||||||||||||
Sbjct: 234 ttaaattcttcgtattctctcttcattgc 206
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 163 acctggaccattccggcatggtctcgaacattatttccatgcca 206
||||||| |||||| | |||||||| |||||||||||| ||||
Sbjct: 354 acctggatcattcccggatggtctctgacattatttccaggcca 311
>gb|AC148289.2| Medicago truncatula chromosome 7 BAC clone mth2-36p20, complete
sequence
Length = 114452
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 456 aagtgcttcaaaagtaagcattgcagcaccatcatccgacacatagc 502
||||||||||||||| ||||| | ||||||||| ||||| |||||||
Sbjct: 41325 aagtgcttcaaaagtgagcatagtagcaccatcgtccgagacatagc 41279
>gb|AW774442.1|AW774442 EST333593 KV3 Medicago truncatula cDNA clone pKV3-22H5, mRNA
sequence
Length = 713
Score = 48.1 bits (24), Expect = 8e-004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 473 gcattgcagcaccatcatccgacacatagcagcaaactttatcaacaggata 524
|||| ||||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct: 713 gcatagcagccccatcatccgaaacatagcatgcaactttatcaactggata 662
>emb|CR321492.1| mte1-48C14RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 566
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 25 gctgaagttcgcagcaatgcattcaaggcaccagcttttttatgatgatcatgtccaggc 84
||||||| ||| | ||| ||||||| ||| || ||||| |||| ||||||| |||||
Sbjct: 342 gctgaagctcgaaccaaggcattcatggcccccgctttcttattgtgatcatagccaggt 401
Query: 85 cttttctcacgtgaaacatagac 107
||||| ||||| |||||||||||
Sbjct: 402 cttttttcacgagaaacatagac 424
>gb|BE322406.1|BE322406 NF020G01IN1F1005 Insect herbivory Medicago truncatula cDNA clone
NF020G01IN 5', mRNA sequence
Length = 658
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacata 500
|||||| || |||||||||||||||||||| || |||||
Sbjct: 233 ttcaaatgtcagcattgcagcaccatcatctgaaacata 195
>gb|AW697481.2|AW697481 NF099A09ST1F1068 Developing stem Medicago truncatula cDNA clone
NF099A09ST 5', mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 462 ttcaaaagtaagcattgcagcaccatcatccgacacata 500
|||||| || |||||||||||||||||||| || |||||
Sbjct: 168 ttcaaatgtcagcattgcagcaccatcatctgaaacata 130
>gb|BG447868.1|BG447868 NF103D10EC1F1080 Elicited cell culture Medicago truncatula cDNA
clone NF103D10EC 5', mRNA sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 25 gctgaagttcgcagcaatgcattcaaggcaccagcttttttatgatgatcatgtccaggc 84
||||||| ||| | ||| ||||||| ||| || ||||| |||| ||||||| |||||
Sbjct: 180 gctgaagctcgaaccaaggcattcatggcccccgctttcttattgtgatcatagccaggt 121
Query: 85 cttttctcacgtgaaacatagac 107
||||| ||||| |||||||||||
Sbjct: 120 cttttttcacgagaaacatagac 98
>gb|CB892743.1|CB892743 EST645535 HOGA Medicago truncatula cDNA clone HOGA-19L11, mRNA
sequence
Length = 842
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 25 gctgaagttcgcagcaatgcattcaaggcaccagcttttttatgatgatcatgtccaggc 84
||||||| ||| | ||| ||||||| ||| || ||||| |||| ||||||| |||||
Sbjct: 234 gctgaagctcgaaccaaggcattcatggcccccgctttcttattgtgatcatagccaggt 175
Query: 85 cttttctcacgtgaaacatagac 107
||||| ||||| |||||||||||
Sbjct: 174 cttttttcacgagaaacatagac 152
>gb|AW691888.1|AW691888 NF045B10ST1F1000 Developing stem Medicago truncatula cDNA clone
NF045B10ST 5', mRNA sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 283 ttaaattcttcgtattctctcttcat 308
||||||||||| ||||||||||||||
Sbjct: 204 ttaaattcttcatattctctcttcat 179
>gb|BI308014.1|BI308014 EST529424 GPOD Medicago truncatula cDNA clone pGPOD-1J18 5' end,
mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 283 ttaaattcttcgtattctctcttcat 308
||||||||||| ||||||||||||||
Sbjct: 489 ttaaattcttcatattctctcttcat 514
>gb|BI308645.1|BI308645 EST530055 GPOD Medicago truncatula cDNA clone pGPOD-7O22 5' end,
mRNA sequence
Length = 715
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 279 aaccttaaattcttcgtattctctcttcat 308
||||||||| ||||| ||||||||||||||
Sbjct: 594 aaccttaaactcttcatattctctcttcat 565
>gb|BQ148943.1|BQ148943 NF084F04FL1F1043 Developing flower Medicago truncatula cDNA clone
NF084F04FL 5', mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgc 311
|||||||| |||||||||||||||||
Sbjct: 107 aattcttcatattctctcttcattgc 82
>gb|CA916873.1|CA916873 EST641020 GPOD Medicago truncatula cDNA clone GPOD-34O9, mRNA
sequence
Length = 779
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 279 aaccttaaattcttcgtattctctcttcat 308
||||||||| ||||| ||||||||||||||
Sbjct: 503 aaccttaaactcttcatattctctcttcat 474
>gb|CA918099.1|CA918099 EST642246 GPOD Medicago truncatula cDNA clone GPOD-38C6, mRNA
sequence
Length = 536
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 279 aaccttaaattcttcgtattctctcttcat 308
||||||||| ||||| ||||||||||||||
Sbjct: 96 aaccttaaactcttcatattctctcttcat 67
>gb|CF068936.1|CF068936 EST669657 MTUS Medicago truncatula cDNA clone MTUS-14C9, mRNA
sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 283 ttaaattcttcgtattctctcttcat 308
||||||||||| ||||||||||||||
Sbjct: 505 ttaaattcttcatattctctcttcat 530
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 44.1 bits (22), Expect = 0.013
Identities = 115/146 (78%)
Strand = Plus / Minus
Query: 355 tagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttctta 414
||||||||||||| | ||| ||||| ||||| || || || || |||| | ||||||
Sbjct: 89008 tagtcaattttctttgaaaagtaccactcaggtgctcgtggttcaatttcatatttcttg 88949
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| ||||||||||| | ||||||| |||| || | ||| |||||||| || | |
Sbjct: 88948 cagaaaggaacccatttccttgcaaattctgatgtctcggcaagagcttcaaatgtcaac 88889
Query: 475 attgcagcaccatcatccgacacata 500
|| |||||||||||||| || |||||
Sbjct: 88888 atagcagcaccatcatcagagacata 88863
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 44.1 bits (22), Expect = 0.013
Identities = 115/146 (78%)
Strand = Plus / Minus
Query: 355 tagtcaattttctgagcaaaataccattcaggagcccgaggctcgattttgtgtttctta 414
||||||||||||| | ||| ||||| ||||| || || || || |||| | ||||||
Sbjct: 124986 tagtcaattttctttgaaaagtaccactcaggtgctcgtggttcaatttcatatttcttg 124927
Query: 415 cagaagggaacccattttcgtgcaaatagacatgtttctgtaagtgcttcaaaagtaagc 474
||||| ||||||||||| | ||||||| |||| || | ||| |||||||| || | |
Sbjct: 124926 cagaaaggaacccatttccttgcaaattctgatgtctcggcaagagcttcaaatgtcaac 124867
Query: 475 attgcagcaccatcatccgacacata 500
|| |||||||||||||| || |||||
Sbjct: 124866 atagcagcaccatcatcagagacata 124841
>gb|AW688376.1|AW688376 NF006F09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF006F09ST 5', mRNA sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 474 aattcttcatattgtctcttcattgctcgtcg 443
>gb|BF644570.1|BF644570 NF063C08EC1F1065 Elicited cell culture Medicago truncatula cDNA
clone NF063C08EC 5', mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 534 aattcttcatattgtctcttcattgctcgtcg 503
>gb|AW693875.2|AW693875 NF070A05ST1F1036 Developing stem Medicago truncatula cDNA clone
NF070A05ST 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 371 aattcttcatattgtctcttcattgctcgtcg 340
>gb|AW690834.2|AW690834 NF039E09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF039E09ST 5', mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 279 aattcttcatattgtctcttcattgctcgtcg 248
>gb|BG454325.1|BG454325 NF110E08LF1F1056 Developing leaf Medicago truncatula cDNA clone
NF110E08LF 5', mRNA sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 263 aattcttcatattgtctcttcattgctcgtcg 232
>gb|CB892280.1|CB892280 EST649249 KV3 Medicago truncatula cDNA clone KV3-53B20, mRNA
sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 413 aattcttcatattgtctcttcattgctcgtcg 382
>gb|CB894714.1|CB894714 EST647506 HOGA Medicago truncatula cDNA clone HOGA-32K17, mRNA
sequence
Length = 799
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 286 aattcttcgtattctctcttcattgcacgtcg 317
|||||||| |||| |||||||||||| |||||
Sbjct: 270 aattcttcatattgtctcttcattgctcgtcg 239
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,696
Number of Sequences: 392609
Number of extensions: 153696
Number of successful extensions: 10476
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10394
Number of HSP's gapped (non-prelim): 78
length of query: 593
length of database: 441,732,993
effective HSP length: 19
effective length of query: 574
effective length of database: 434,273,422
effective search space: 249272944228
effective search space used: 249272944228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)