BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12h10.yg.2.1
(339 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORK... 50 1e-004
gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKI... 50 1e-004
gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Me... 48 5e-004
>gb|AC150782.12| Medicago truncatula clone mth2-116a21, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 118726
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 205 tttcagcaaaactcttgtgctgcacaacaaaaccacg 241
|||| |||||||||||||||| ||||||||||||||
Sbjct: 21387 tttcggcaaaactcttgtgctctacaacaaaaccacg 21351
>gb|AC158736.12| Medicago truncatula clone mth2-165n2, WORKING DRAFT SEQUENCE
Length = 118519
Score = 50.1 bits (25), Expect = 1e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 205 tttcagcaaaactcttgtgctgcacaacaaaaccacg 241
|||| |||||||||||||||| ||||||||||||||
Sbjct: 11410 tttcggcaaaactcttgtgctctacaacaaaaccacg 11446
>gb|BF641357.1|BF641357 NF061B11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF061B11IN 5', mRNA sequence
Length = 660
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 207 tcagcaaaactcttgtgctgcacaacaaaacc 238
||||||||||||||||||| ||| ||||||||
Sbjct: 533 tcagcaaaactcttgtgctccaccacaaaacc 502
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,036
Number of Sequences: 392609
Number of extensions: 79036
Number of successful extensions: 5430
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5420
Number of HSP's gapped (non-prelim): 10
length of query: 339
length of database: 441,732,993
effective HSP length: 19
effective length of query: 320
effective length of database: 434,273,422
effective search space: 138967495040
effective search space used: 138967495040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)