BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ416755.1|MTR416755 Medicago truncatula partial mRNA f... 66 4e-009
gb|AY557602.1| Medicago truncatula cultivar Jemalong core a... 56 4e-006
gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKIN... 56 4e-006
>emb|AJ416755.1|MTR416755 Medicago truncatula partial mRNA for alpha1,3-fucosyltransferase
(fuct3 gene)
Length = 658
Score = 65.9 bits (33), Expect = 4e-009
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
||||| || ||||||||||| || | |||||| || | ||| || ||||| ||||| |||
Sbjct: 609 caaaggcggcaagatgaatgtacagntgccatatccacaagggccttgaaggaatcagat 550
Query: 381 ggaccatcatacttccacctcaaagattgatt 412
|| || ||||||||||||||||| ||||||||
Sbjct: 549 ggcccttcatacttccacctcaatgattgatt 518
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 507 ggagnaaactcttgaatatttggagcaccaacaac 541
|||| ||| |||||||||||||||| |||||||||
Sbjct: 423 ggagcaaaatcttgaatatttggaggaccaacaac 389
>gb|AY557602.1| Medicago truncatula cultivar Jemalong core alpha
1,3-fucosyltransferase (FUT2) gene, complete cds
Length = 3124
Score = 56.0 bits (28), Expect = 4e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
||||| || ||||||||||| || |||||||| || | ||| || ||||| ||||| |||
Sbjct: 2264 caaaggcggcaagatgaatgtacagctgccatatccacaagggccttgaaggaatcagat 2205
Query: 381 ggaccatcatacttccacct 400
|| || ||||||||||||||
Sbjct: 2204 ggcccttcatacttccacct 2185
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 507 ggagnaaactcttgaatatttggagcaccaacaac 541
|||| ||| |||||||||||||||| |||||||||
Sbjct: 1826 ggagcaaaatcttgaatatttggaggaccaacaac 1792
>gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKING DRAFT SEQUENCE, 16
unordered pieces
Length = 124356
Score = 56.0 bits (28), Expect = 4e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
||||| || ||||||||||| || |||||||| || | ||| || ||||| ||||| |||
Sbjct: 92933 caaaggcggcaagatgaatgtacagctgccatatccacaagggccttgaaggaatcagat 92992
Query: 381 ggaccatcatacttccacct 400
|| || ||||||||||||||
Sbjct: 92993 ggcccttcatacttccacct 93012
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 507 ggagnaaactcttgaatatttggagcaccaacaac 541
|||| ||| |||||||||||||||| |||||||||
Sbjct: 93371 ggagcaaaatcttgaatatttggaggaccaacaac 93405
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 190,201
Number of Sequences: 392609
Number of extensions: 190201
Number of successful extensions: 13331
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13316
Number of HSP's gapped (non-prelim): 15
length of query: 637
length of database: 441,732,993
effective HSP length: 19
effective length of query: 618
effective length of database: 434,273,422
effective search space: 268380974796
effective search space used: 268380974796
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)