BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA857877.1|CA857877 EST635132 GLSD Medicago truncatula c... 46 0.004
gb|CA858080.1|CA858080 EST635335 GLSD Medicago truncatula c... 46 0.004
gb|AC146585.18| Medicago truncatula clone mth2-68o3, comple... 46 0.004
gb|AC123572.15| Medicago truncatula clone mth2-2b2, complet... 46 0.004
gb|AC165219.2| Medicago truncatula chromosome 7 clone mth2-... 46 0.004
gb|AC165216.2| Medicago truncatula chromosome 7 clone mte1-... 46 0.004
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.060
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 42 0.060
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 40 0.24
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.24
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.24
>gb|CA857877.1|CA857877 EST635132 GLSD Medicago truncatula cDNA clone pGLSD-26G18, mRNA
sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 96 ccaaagtctgccacttttgctctcatgttcttgtctaggagaatgtt 142
||||| |||| ||||||||||||||| || | ||||||||||||||
Sbjct: 243 ccaaaatctgacacttttgctctcatattgatatctaggagaatgtt 197
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaat 226
||||||||||| ||||||||||||
Sbjct: 136 acctttcgcagcatcttctgcaat 113
>gb|CA858080.1|CA858080 EST635335 GLSD Medicago truncatula cDNA clone pGLSD-26N18, mRNA
sequence
Length = 743
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 96 ccaaagtctgccacttttgctctcatgttcttgtctaggagaatgtt 142
||||| |||| ||||||||||||||| || | ||||||||||||||
Sbjct: 243 ccaaaatctgacacttttgctctcatattgatatctaggagaatgtt 197
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaat 226
||||||||||| ||||||||||||
Sbjct: 136 acctttcgcagcatcttctgcaat 113
>gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete sequence
Length = 124526
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 93 agcccaaagtctgccacttttgctctcatgt 123
|||||||||||||| || |||||||||||||
Sbjct: 94015 agcccaaagtctgcaacctttgctctcatgt 94045
>gb|AC123572.15| Medicago truncatula clone mth2-2b2, complete sequence
Length = 119925
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 96 ccaaagtctgccacttttgctctcatgttcttgtctaggagaatgtt 142
||||| |||| ||||||||||||||| || | ||||||||||||||
Sbjct: 57633 ccaaaatctgacacttttgctctcatattgatatctaggagaatgtt 57587
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaat 226
||||||||||| ||||||||||||
Sbjct: 57427 acctttcgcagcatcttctgcaat 57404
>gb|AC165219.2| Medicago truncatula chromosome 7 clone mth2-84o7, *** SEQUENCING IN
PROGRESS ***, 23 unordered pieces
Length = 148365
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 294 ccattatgcatgaactcatacac 316
|||||||||||||||||||||||
Sbjct: 16543 ccattatgcatgaactcatacac 16521
Score = 42.1 bits (21), Expect = 0.060
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaatctcaagacg 235
|||||| |||| ||||||||| |||||||||||
Sbjct: 16711 acctttggcagcatcttctgcgatctcaagacg 16679
>gb|AC165216.2| Medicago truncatula chromosome 7 clone mte1-13l14, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 93871
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 294 ccattatgcatgaactcatacac 316
|||||||||||||||||||||||
Sbjct: 51916 ccattatgcatgaactcatacac 51938
Score = 42.1 bits (21), Expect = 0.060
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacg 235
|||||| |||| ||||||||| |||||||||||
Sbjct: 51748 acctttggcagcatcttctgcgatctcaagacg 51780
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtact 299
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtact 340
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 1 cggccgcccgggcaggtact 20
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 445 cggccgcccgggcaggtact 426
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,652
Number of Sequences: 392609
Number of extensions: 133652
Number of successful extensions: 10170
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10137
Number of HSP's gapped (non-prelim): 33
length of query: 681
length of database: 441,732,993
effective HSP length: 19
effective length of query: 662
effective length of database: 434,273,422
effective search space: 287489005364
effective search space used: 287489005364
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)