BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW685617.2|AW685617 NF032D02NR1F1000 Nodulated root Medi... 123 2e-026
gb|CA917517.1|CA917517 EST641664 GPOD Medicago truncatula c... 123 2e-026
gb|CX533540.1|CX533540 s13dNF0GE10MJ071_320234 Methyl Jasmo... 123 2e-026
gb|BE248444.2|BE248444 NF021D09DT1F1075 Drought Medicago tr... 115 5e-024
gb|BG644951.1|BG644951 EST506570 KV3 Medicago truncatula cD... 111 8e-023
gb|BG644781.1|BG644781 EST506400 KV3 Medicago truncatula cD... 103 2e-020
gb|CA921598.1|CA921598 EST639316 MTUS Medicago truncatula c... 103 2e-020
gb|BF635911.1|BF635911 NF048D11DT1F1094 Drought Medicago tr... 100 3e-019
gb|CX527586.1|CX527586 s13dNF45B12AT101_515684 Aphid-Infect... 86 5e-015
gb|AL389480.1|AL389480 MtBC55B04F1 MtBC Medicago truncatula... 72 7e-011
gb|AC149307.17| Medicago truncatula clone mth2-91a15, compl... 72 7e-011
gb|AC174326.4| Medicago truncatula clone mth2-107i14, WORKI... 72 7e-011
gb|BG582106.1|BG582106 EST483844 GVN Medicago truncatula cD... 68 1e-009
gb|AC122169.24| Medicago truncatula clone mth2-9m5, complet... 66 4e-009
gb|AL382730.1|AL382730 MtBC09F06F1 MtBC Medicago truncatula... 60 3e-007
gb|BQ138325.1|BQ138325 NF002A01PH1F1003 Phoma-infected Medi... 60 3e-007
gb|CX526626.1|CX526626 s13dNF36H07AT064_513764 Aphid-Infect... 60 3e-007
gb|DW018654.1|DW018654 EST1227615 MTY Medicago truncatula c... 48 0.001
gb|AW695060.1|AW695060 NF082H11ST1F1095 Developing stem Med... 46 0.004
gb|AW329498.2|AW329498 N200741e rootphos(-) Medicago trunca... 46 0.004
gb|BF646089.1|BF646089 NF065F11EC1F1094 Elicited cell cultu... 46 0.004
gb|BG447699.1|BG447699 NF065E10EC1F1082 Elicited cell cultu... 46 0.004
gb|BG644440.1|BG644440 EST506059 KV3 Medicago truncatula cD... 46 0.004
gb|BG645576.1|BG645576 EST507195 KV3 Medicago truncatula cD... 46 0.004
gb|AW685298.1|AW685298 NF026H01NR1F1000 Nodulated root Medi... 44 0.016
emb|CR319759.1| mte1-45H17FM1 BAC end, cultivar Jemalong A1... 40 0.25
gb|CB894779.1|CB894779 EST647571 HOGA Medicago truncatula c... 40 0.25
gb|AC151823.11| Medicago truncatula clone mth2-45h2, comple... 40 0.25
gb|AC130809.25| Medicago truncatula clone mth2-15i12, compl... 40 0.25
gb|AC169089.8| Medicago truncatula clone mth2-193h6, WORKIN... 40 0.25
>gb|AW685617.2|AW685617 NF032D02NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF032D02NR 5', mRNA sequence
Length = 573
Score = 123 bits (62), Expect = 2e-026
Identities = 221/274 (80%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 53 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 112
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 113 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 172
Query: 437 caagagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtca 496
|||||||| || |||| || |||||||| || ||||| || ||| | | || ||| |
Sbjct: 173 caagagctacagcgagcacgccagcagggaatatttatttcaagtactggagagcagacc 232
Query: 497 cactccatgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaa 556
|| || |||||||||||||| ||| ||| |||||| || ||||| | ||||| |||
Sbjct: 233 cattcaatgagtggaaatggtgcaatggcatttgatgcagaatatgcacgatggttagaa 292
Query: 557 gagcacaatcggcaaattagtgaactaagggctg 590
||||| ||| |||||| | ||||||||||||||
Sbjct: 293 gagcataataggcaaaccaatgaactaagggctg 326
>gb|CA917517.1|CA917517 EST641664 GPOD Medicago truncatula cDNA clone GPOD-36M14, mRNA
sequence
Length = 743
Score = 123 bits (62), Expect = 2e-026
Identities = 221/274 (80%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 132 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 191
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 192 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 251
Query: 437 caagagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtca 496
|||||||| || |||| || |||||||| || ||||| || ||| | | || ||| |
Sbjct: 252 caagagctacagcgagcacgccagcagggaatatttatttcaagtactggagagcagacc 311
Query: 497 cactccatgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaa 556
|| || |||||||||||||| ||| ||| |||||| || ||||| | ||||| |||
Sbjct: 312 cattcaatgagtggaaatggtgcaatggcatttgatgcagaatatgcacgatggttagaa 371
Query: 557 gagcacaatcggcaaattagtgaactaagggctg 590
||||| ||| |||||| | ||||||||||||||
Sbjct: 372 gagcataataggcaaaccaatgaactaagggctg 405
>gb|CX533540.1|CX533540 s13dNF0GE10MJ071_320234 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 625
Score = 123 bits (62), Expect = 2e-026
Identities = 221/274 (80%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 80 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 139
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 140 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 199
Query: 437 caagagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtca 496
|||||||| || |||| || |||||||| || ||||| || ||| | | || ||| |
Sbjct: 200 caagagctacagcgagcacgccagcagggaatatttatttcaagtactggagagcagacc 259
Query: 497 cactccatgagtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaa 556
|| || |||||||||||||| ||| ||| |||||| || ||||| | ||||| |||
Sbjct: 260 cattcaatgagtggaaatggtgcaatggcatttgatgcagaatatgcacgatggttagaa 319
Query: 557 gagcacaatcggcaaattagtgaactaagggctg 590
||||| ||| |||||| | ||||||||||||||
Sbjct: 320 gagcataataggcaaaccaatgaactaagggctg 353
>gb|BE248444.2|BE248444 NF021D09DT1F1075 Drought Medicago truncatula cDNA clone NF021D09DT
5', mRNA sequence
Length = 469
Score = 115 bits (58), Expect = 5e-024
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 171 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 230
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 231 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 290
Query: 437 caagagctgcaaagagctcgtcagcagggcatttttat 474
|||||||| || |||| || |||||||| || |||||
Sbjct: 291 caagagctacagcgagcacgccagcagggaatatttat 328
>gb|BG644951.1|BG644951 EST506570 KV3 Medicago truncatula cDNA clone pKV3-38F24 5' end,
mRNA sequence
Length = 774
Score = 111 bits (56), Expect = 8e-023
Identities = 110/128 (85%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 567 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 626
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 627 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 686
Query: 437 caagagct 444
||||||||
Sbjct: 687 caagagct 694
>gb|BG644781.1|BG644781 EST506400 KV3 Medicago truncatula cDNA clone pKV3-38E24 5' end,
mRNA sequence
Length = 642
Score = 103 bits (52), Expect = 2e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || ||||||||||| || ||||| ||||| ||||||||
Sbjct: 507 gatcaaaagacgttaagacggctggctcaaaatcgagaagctgccaggaaaagccgactg 566
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| ||||||||||||
Sbjct: 567 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagag 626
Query: 437 caagagct 444
||||||||
Sbjct: 627 caagagct 634
>gb|CA921598.1|CA921598 EST639316 MTUS Medicago truncatula cDNA clone MTUS-42C4, mRNA
sequence
Length = 800
Score = 103 bits (52), Expect = 2e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 571 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 630
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| ||||| |||| |||||||
Sbjct: 631 aggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgaccccactagag 690
Query: 437 caagagct 444
||||||||
Sbjct: 691 caagagct 698
>gb|BF635911.1|BF635911 NF048D11DT1F1094 Drought Medicago truncatula cDNA clone NF048D11DT
5', mRNA sequence
Length = 703
Score = 99.6 bits (50), Expect = 3e-019
Identities = 132/158 (83%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 541 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 600
Query: 377 aggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagag 436
||||| ||||||||||| ||||| || |||| |||||||| |||| ||||||||||||
Sbjct: 601 aggaaaaaggcatatgtgcaacaattagagagcagcaggct-gaactgacccaactagag 659
Query: 437 caagagctgcaaagagctcgtcagcagggcatttttat 474
|||||||| || |||| || |||||||| || |||||
Sbjct: 660 caagagctacagcgagcacgccagcagggaatatttat 697
>gb|CX527586.1|CX527586 s13dNF45B12AT101_515684 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 636
Score = 85.7 bits (43), Expect = 5e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 368 agccgactaaggaagaaggcatatgttcaacagttggagaatagcaggctaaaacttacc 427
|||||||| ||||| ||||||||||| ||||| || |||| |||||||| ||||| |||
Sbjct: 23 agccgactgaggaaaaaggcatatgtgcaacaattagagagcagcaggctgaaactgacc 82
Query: 428 caactagagcaagagctgcaaagagctcgtcagcagggcatttttat 474
||||||||||||||||| || |||| || |||||||| || |||||
Sbjct: 83 caactagagcaagagctacagcgagcacgccagcagggaatatttat 129
>gb|AL389480.1|AL389480 MtBC55B04F1 MtBC Medicago truncatula cDNA clone MtBC55B04 T3, mRNA
sequence
Length = 405
Score = 71.9 bits (36), Expect = 7e-011
Identities = 162/204 (79%)
Strand = Plus / Plus
Query: 387 catatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagctgc 446
||||||| ||||| || |||| |||||||| ||||| |||||||||||||||||||| |
Sbjct: 1 catatgtgcaacaattagagagcagcaggctgaaactgacccaactagagcaagagctac 60
Query: 447 aaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacactccatga 506
| |||| || |||||||| || ||||| || ||| | | || ||| | || || ||||
Sbjct: 61 agcgagcacgccagcagggaatatttatttcaagtactggagagcagacccattcaatga 120
Query: 507 gtggaaatggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatc 566
|||||||||| ||| ||| |||||| || ||||| | ||||| |||||||| |||
Sbjct: 121 gtggaaatggtgcaatggcatttgatgcagaatatgcacgatggttagaagagcataata 180
Query: 567 ggcaaattagtgaactaagggctg 590
|||||| | ||||||||||||||
Sbjct: 181 ggcaaaccaatgaactaagggctg 204
>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence
Length = 136553
Score = 71.9 bits (36), Expect = 7e-011
Identities = 132/164 (80%)
Strand = Plus / Plus
Query: 539 tatgcgaggtggttggaagagcacaatcggcaaattagtgaactaagggctggtgtcagt 598
||||| |||||| |||||||||| ||||| ||||||| ||| || || || | ||| | |
Sbjct: 3674 tatgcaaggtggctggaagagcagaatcgacaaattaatgagctgagagcagctgtaaat 3733
Query: 599 gctcatgcaagtgatactgatcttcgaagtgttgttgataagatcatgtcacactatgat 658
|||||||||||||||| || ||||| | |||||||| || || |||| || |||
Sbjct: 3734 tctcatgcaagtgataccgaacttcgcatgattgttgatggtatagtggcacattacgat 3793
Query: 659 gagatttttaggctcaaaggcaatgcagccaaggcagatgtttt 702
|||||||||||||| |||||| |||||| ||||| ||||||||
Sbjct: 3794 gagatttttaggctgaaaggcgttgcagctaaggctgatgtttt 3837
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 425 acccaactagagcaagagct 444
||||||||||||||||||||
Sbjct: 2894 acccaactagagcaagagct 2913
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 341 gctcaaaatcgtgaggctgcaaggaagagccg 372
||||| ||||||||||| |||||||| |||||
Sbjct: 2053 gctcagaatcgtgaggcggcaaggaaaagccg 2084
>gb|AC174326.4| Medicago truncatula clone mth2-107i14, WORKING DRAFT SEQUENCE, 25
unordered pieces
Length = 221159
Score = 71.9 bits (36), Expect = 7e-011
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 539 tatgcgaggtggttggaagagcacaatcggcaaattagtgaactaagggctggtgtcagt 598
||||| |||||| |||||||||| ||||| ||||||| ||| || || || | ||| | |
Sbjct: 203332 tatgcaaggtggctggaagagcagaatcgacaaattaatgagctgagagcagctgtaaat 203273
Query: 599 gctcatgcaagtgatactgatcttcgaagtgttgttgataagatcatgtcacactatgat 658
|||||||||||||||| || ||||| | |||||||| || || |||| || |||
Sbjct: 203272 tctcatgcaagtgataccgaacttcgcatgattgttgatggtatagtggcacattacgat 203213
Query: 659 gagatttttaggctcaaaggcaatgcagccaaggcagatgtttt 702
|||||||||||||| |||||| |||||| ||||| ||||||||
Sbjct: 203212 gagatttttaggctgaaaggcgttgcagctaaggctgatgtttt 203169
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 341 gctcaaaatcgtgaggctgcaaggaagagccg 372
||||| ||||||||||| |||||||| |||||
Sbjct: 204953 gctcagaatcgtgaggcggcaaggaaaagccg 204922
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 425 acccaactagagcaagagct 444
||||||||||||||||||||
Sbjct: 204112 acccaactagagcaagagct 204093
>gb|BG582106.1|BG582106 EST483844 GVN Medicago truncatula cDNA clone pGVN-66B8 5' end, mRNA
sequence
Length = 765
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
|||||||| ||||| ||||| |||||||| ||||| || |||||||||||||||| |||
Sbjct: 611 cttgctcagaatcgcgaggcggcaaggaaaagccggttacggaagaaggcatatgtacaa 670
Query: 398 cagttggaga 407
||| ||||||
Sbjct: 671 cagctggaga 680
>gb|AC122169.24| Medicago truncatula clone mth2-9m5, complete sequence
Length = 125652
Score = 65.9 bits (33), Expect = 4e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||| ||||| || |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 63543 aggcatatgtgcaacaattagagagcagcaggctgaaactgacccaactagagcaagagc 63602
Query: 444 t 444
|
Sbjct: 63603 t 63603
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 341 gctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaagg 386
|||||||||||||| ||||| ||||| |||||||| ||||| ||||
Sbjct: 63398 gctcaaaatcgtgaagctgccaggaaaagccgactgaggaaaaagg 63443
>gb|AL382730.1|AL382730 MtBC09F06F1 MtBC Medicago truncatula cDNA clone MtBC09F06 T3, mRNA
sequence
Length = 367
Score = 60.0 bits (30), Expect = 3e-007
Identities = 143/181 (79%)
Strand = Plus / Plus
Query: 410 agcaggctaaaacttacccaactagagcaagagctgcaaagagctcgtcagcagggcatt 469
|||||||| ||||| |||||||||||||||||||| || |||| || |||||||| ||
Sbjct: 19 agcaggctgaaactgacccaactagagcaagagctacagcgagcacgccagcagggaata 78
Query: 470 tttatatctagttcagttgatcagtcacactccatgagtggaaatggggcatcggccttt 529
||||| || ||| | | || ||| | || || |||||||||||||| ||| ||| |||
Sbjct: 79 tttatttcaagtactggagagcagacccattcaatgagtggaaatggtgcaatggcattt 138
Query: 530 gatatggagtatgcgaggtggttggaagagcacaatcggcaaattagtgaactaagggct 589
||| | ||||| | ||||| |||||||| ||| |||||| | |||||||||||||
Sbjct: 139 gatgcanaatatgcacgatggttagaagagcataataggcaaaccaatgaactaagggct 198
Query: 590 g 590
|
Sbjct: 199 g 199
>gb|BQ138325.1|BQ138325 NF002A01PH1F1003 Phoma-infected Medicago truncatula cDNA clone
NF002A01PH 5', mRNA sequence
Length = 664
Score = 60.0 bits (30), Expect = 3e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 558 gatcaaaagacgttaagacggctggctcaaaatcgtgaagctgccaggaaaagccgactg 617
Query: 377 aggaagaaggcatatgt 393
| ||| |||||||||||
Sbjct: 618 angaaaaaggcatatgt 634
>gb|CX526626.1|CX526626 s13dNF36H07AT064_513764 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 627
Score = 60.0 bits (30), Expect = 3e-007
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 317 gatcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgacta 376
||||||||||| || | || || ||||| |||||||| ||||| |||| ||||||||
Sbjct: 533 gatcaaaagacgttaagacggctggctcanaatcgtgaagctgccagganaagccgactg 592
Query: 377 aggaagaaggcatatgttcaaca 399
||||| ||||||||||| |||||
Sbjct: 593 aggaanaaggcatatgtgcaaca 615
>gb|DW018654.1|DW018654 EST1227615 MTY Medicago truncatula cDNA clone MTYB930, mRNA
sequence
Length = 770
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 341 gctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaacag 400
||||| ||||||||||| |||||||| ||||| | || ||||| || ||||| |||||
Sbjct: 576 gctcataatcgtgaggcggcaaggaaaagccggttgagaaagaaagcctatgtccaacaa 635
Query: 401 ttggagaatagcaggctaaaacttacccaactagagcaagagct 444
||||| | ||| | | || || ||||||||||||||||||||
Sbjct: 636 ttggaaagtagtcgtttgaagctgacccaactagagcaagagct 679
>gb|AW695060.1|AW695060 NF082H11ST1F1095 Developing stem Medicago truncatula cDNA clone
NF082H11ST 5', mRNA sequence
Length = 660
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 572 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 618
>gb|AW329498.2|AW329498 N200741e rootphos(-) Medicago truncatula cDNA clone MHRP-20G9, mRNA
sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 74 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 120
>gb|BF646089.1|BF646089 NF065F11EC1F1094 Elicited cell culture Medicago truncatula cDNA
clone NF065F11EC 5', mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 16 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 62
>gb|BG447699.1|BG447699 NF065E10EC1F1082 Elicited cell culture Medicago truncatula cDNA
clone NF065E10EC 5', mRNA sequence
Length = 514
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 17 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 63
>gb|BG644440.1|BG644440 EST506059 KV3 Medicago truncatula cDNA clone pKV3-37E6 5' end, mRNA
sequence
Length = 649
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 52 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 98
>gb|BG645576.1|BG645576 EST507195 KV3 Medicago truncatula cDNA clone pKV3-46P5 5' end, mRNA
sequence
Length = 655
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 353 gaggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
|||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 53 gaggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 99
>gb|AW685298.1|AW685298 NF026H01NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF026H01NR 5', mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.016
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 354 aggctgcaaggaagagccgactaaggaagaaggcatatgttcaaca 399
||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 1 aggctgcaaggaaaagtcgtctaaggaaaaaggcttatgtgcaaca 46
>emb|CR319759.1| mte1-45H17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 789
Score = 40.1 bits (20), Expect = 0.25
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 341 gctcaaaatcgtgaggctgcaaggaagagccg 372
||||| ||||||||||| |||||||| |||||
Sbjct: 441 gctcagaatcgtgaggcggcaaggaaaagccg 410
>gb|CB894779.1|CB894779 EST647571 HOGA Medicago truncatula cDNA clone HOGA-32K14, mRNA
sequence
Length = 887
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 219 catcaacagatgatactgac 238
||||||||||||||||||||
Sbjct: 186 catcaacagatgatactgac 167
>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
Length = 125855
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 catcaacagatgatactgac 238
||||||||||||||||||||
Sbjct: 58813 catcaacagatgatactgac 58832
>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
Length = 114664
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 219 catcaacagatgatactgac 238
||||||||||||||||||||
Sbjct: 83264 catcaacagatgatactgac 83245
>gb|AC169089.8| Medicago truncatula clone mth2-193h6, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 145271
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 catcaacagatgatactgac 238
||||||||||||||||||||
Sbjct: 61749 catcaacagatgatactgac 61768
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,705
Number of Sequences: 392609
Number of extensions: 147705
Number of successful extensions: 10930
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10845
Number of HSP's gapped (non-prelim): 80
length of query: 714
length of database: 441,732,993
effective HSP length: 19
effective length of query: 695
effective length of database: 434,273,422
effective search space: 301820028290
effective search space used: 301820028290
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)