BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.064D08F020918.3.1
         (559 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC140030.6|  Medicago truncatula clone mth2-7g24, complet...    38   0.76 
emb|CR333982.1|  mte1-64O15RM2 BAC end, cultivar Jemalong A1...    36   3.0  
emb|CR506301.1|  mth4-40N21RM1 BAC end, cultivar Jemalong A1...    36   3.0  
gb|AL381543.1|AL381543  MtBC01F02R2 MtBC Medicago truncatula...    36   3.0  
gb|AC146342.5|  Medicago truncatula clone mth2-10o20, comple...    36   3.0  
gb|AC146751.10|  Medicago truncatula clone mth2-60a22, compl...    36   3.0  
gb|AC147014.24|  Medicago truncatula clone mth2-164l15, WORK...    36   3.0  
gb|AC141864.7|  Medicago truncatula clone mth2-21o24, comple...    36   3.0  
gb|AC151483.22|  Medicago truncatula clone mth2-157f20, WORK...    36   3.0  

>gb|AC140030.6| Medicago truncatula clone mth2-7g24, complete sequence
          Length = 122057

 Score = 38.2 bits (19), Expect = 0.76
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 309   aaagcaaatggtaaaaagacatg 331
             ||||||||||||||||| |||||
Sbjct: 82676 aaagcaaatggtaaaaaaacatg 82698



>emb|CR333982.1| mte1-64O15RM2 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 599

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 310 aagcaaatggtaaaaaga 327
           ||||||||||||||||||
Sbjct: 262 aagcaaatggtaaaaaga 245



>emb|CR506301.1| mth4-40N21RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 557

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 374 gaaatgccaactcatgcc 391
           ||||||||||||||||||
Sbjct: 502 gaaatgccaactcatgcc 485



>gb|AL381543.1|AL381543 MtBC01F02R2 MtBC Medicago truncatula cDNA clone MtBC01F02 T7, mRNA
           sequence
          Length = 553

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 98  acagttcaacaaaacact 115
           ||||||||||||||||||
Sbjct: 426 acagttcaacaaaacact 409



>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
          Length = 112154

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 489   aaacaaatggtgtaaaat 506
             ||||||||||||||||||
Sbjct: 44380 aaacaaatggtgtaaaat 44397



>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence
          Length = 119297

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 98    acagttcaacaaaacact 115
             ||||||||||||||||||
Sbjct: 82569 acagttcaacaaaacact 82552



>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
          Length = 127679

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 196   gaatcagaagagatagag 213
             ||||||||||||||||||
Sbjct: 29347 gaatcagaagagatagag 29364



>gb|AC141864.7| Medicago truncatula clone mth2-21o24, complete sequence
          Length = 106571

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 310    aagcaaatggtaaaaaga 327
              ||||||||||||||||||
Sbjct: 102706 aagcaaatggtaaaaaga 102723



>gb|AC151483.22| Medicago truncatula clone mth2-157f20, WORKING DRAFT SEQUENCE
          Length = 119773

 Score = 36.2 bits (18), Expect = 3.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 218   ctcctcacaagaaaattg 235
             ||||||||||||||||||
Sbjct: 63073 ctcctcacaagaaaattg 63056



  Database: Mt_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:46 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,096
Number of Sequences: 392609
Number of extensions: 136096
Number of successful extensions: 11538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11517
Number of HSP's gapped (non-prelim): 21
length of query: 559
length of database: 441,732,993
effective HSP length: 19
effective length of query: 540
effective length of database: 434,273,422
effective search space: 234507647880
effective search space used: 234507647880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)